Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044360 Camellia sinensis var. sinensis HOM05D004763 ORTHO05D007492 0.0e+00 1315.4 670 100.0
Dinv36304 Davidia involucrata HOM05D004763 ORTHO05D007492 0.0e+00 1208.4 668 91.6
Hma1.2p1_1169F.1_g263300 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 0.0e+00 1194.5 668 90.6
GSVIVG01025336001 Vitis vinifera HOM05D004763 ORTHO05D007492 0.0e+00 1194.1 668 90.4
Thecc.09G223100 Theobroma cacao HOM05D004763 ORTHO05D007492 0.0e+00 1187.9 670 88.7
TAR623G1126 Trochodendron aralioides HOM05D004763 ORTHO05D007492 0.0e+00 1182.5 667 88.8
Gohir.A13G215400 Gossypium hirsutum HOM05D004763 ORTHO05D007492 0.0e+00 1177.9 668 87.9
Gohir.D13G219100 Gossypium hirsutum HOM05D004763 ORTHO05D007492 0.0e+00 1177.5 668 87.7
Gorai.013G250000 Gossypium raimondii HOM05D004763 ORTHO05D007492 0.0e+00 1176.4 668 87.7
Sc09g0000480 Simmondsia chinensis HOM05D004763 ORTHO05D007492 0.0e+00 1175.2 669 88.2
CiPaw.14G125100 Carya illinoinensis HOM05D004763 ORTHO05D007492 0.0e+00 1173.3 666 87.5
Hund22081 Selenicereus undatus HOM05D004763 ORTHO05D007492 0.0e+00 1171.0 668 88.5
MELO3C014639.2 Cucumis melo HOM05D004763 ORTHO05D007492 0.0e+00 1168.7 665 88.0
CsaV3_4G023800 Cucumis sativus L. HOM05D004763 ORTHO05D007492 0.0e+00 1166.4 665 87.7
Cc01_g04070 Coffea canephora HOM05D004763 ORTHO05D007492 0.0e+00 1165.2 668 87.6
TWI34G0672 Tripterygium wilfordii HOM05D004763 ORTHO05D007492 0.0e+00 1160.6 668 87.0
Nn7g36058 Nelumbo nucifera HOM05D004763 ORTHO05D007492 0.0e+00 1160.2 669 87.0
Manes.14G014500 Manihot esculenta HOM05D004763 ORTHO05D007492 0.0e+00 1159.8 668 86.4
HanXRQChr14g0451781 Helianthus annuus HOM05D004763 ORTHO05D007492 0.0e+00 1157.5 669 87.0
QL01p006243 Quercus lobata HOM05D004763 ORTHO05D007492 0.0e+00 1157.1 669 86.8
Sed0013957 Sechium edule HOM05D004763 ORTHO05D007492 0.0e+00 1154.0 665 86.9
Medtr2g098510 Medicago truncatula HOM05D004763 ORTHO05D007492 0.0e+00 1150.2 668 85.9
Psat5g288480 Pisum sativum HOM05D004763 ORTHO05D007492 0.0e+00 1147.1 668 86.2
ECA238G4453 Erigeron canadensis HOM05D004763 ORTHO05D007492 0.0e+00 1144.4 669 86.2
Glyma.13G342900 Glycine max HOM05D004763 ORTHO05D007492 0.0e+00 1143.3 668 86.1
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 0.0e+00 1142.9 669 85.8
Sopen01g009200 Solanum pennellii HOM05D004763 ORTHO05D007492 0.0e+00 1141.7 668 85.9
AUR62019250 Chenopodium quinoa HOM05D004763 ORTHO05D007492 0.0e+00 1141.3 669 85.7
Solyc01g014490.4 Solanum lycopersicum HOM05D004763 ORTHO05D007492 0.0e+00 1141.3 668 85.9
Lalb_Chr14g0372291 Lupinus albus HOM05D004763 ORTHO05D007492 0.0e+00 1140.2 669 85.8
CANSAT54G1729 Cannabis sativa HOM05D004763 ORTHO05D007492 0.0e+00 1138.3 676 85.9
Potri.003G211000 Populus trichocarpa HOM05D004763 ORTHO05D007492 0.0e+00 1138.3 665 85.3
Aqoxy1G00185 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 0.0e+00 1137.9 667 85.2
Phvul.005G150500 Phaseolus vulgaris HOM05D004763 ORTHO05D007492 0.0e+00 1137.5 670 85.5
arahy.Tifrunner.gnm1.ann1.P0K6XU Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1137.1 668 85.8
arahy.Tifrunner.gnm1.ann1.VYK1P0 Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1136.3 670 85.4
PSO339G3791 Papaver somniferum HOM05D004763 ORTHO05D007492 0.0e+00 1135.6 670 85.8
arahy.Tifrunner.gnm1.ann1.GN3GFY Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1134.4 670 85.2
Eucgr.B03662 Eucalyptus grandis HOM05D004763 ORTHO05D007492 0.0e+00 1132.9 669 84.8
Cpa.g.sc84.111 Carica papaya HOM05D004763 ORTHO05D007492 0.0e+00 1130.9 697 82.4
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 0.0e+00 1130.2 659 85.9
Peaxi162Scf00773g00119 Petunia axillaris HOM05D004763 ORTHO05D007492 0.0e+00 1127.5 676 84.5
Duzib150G1218 Durio zibethinus HOM05D004763 ORTHO05D007492 0.0e+00 1122.5 691 82.5
COL.COLO4_09893 Corchorus olitorius HOM05D004763 ORTHO05D007492 0.0e+00 1121.3 664 84.6
EL10Ac4g10318 Beta vulgaris HOM05D004763 ORTHO05D007492 0.0e+00 1120.5 661 84.9
Ciclev10014511m.g Citrus clementina HOM05D004763 ORTHO05D007492 0.0e+00 1119.0 663 84.3
THA.LOC104816912 Tarenaya hassleriana HOM05D004763 ORTHO05D007492 0.0e+00 1117.8 664 83.3
Rhsim01G0189300 Rhododendron simsii HOM05D004763 ORTHO05D007492 0.0e+00 1116.3 752 78.6
RcHm_v2.0_Chr5g0078101 Rosa chinensis HOM05D004763 ORTHO05D007492 0.0e+00 1116.3 662 84.0
Lj3g0020649 Lotus japonicus HOM05D004763 ORTHO05D007492 0.0e+00 1115.5 668 84.1
Nitab4.5_0006575g0020 Nicotiana tabacum HOM05D004763 ORTHO05D007492 0.0e+00 1115.5 693 83.4
arahy.Tifrunner.gnm1.ann1.X75IXN Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1111.3 708 80.4
Migut.D00558 Erythranthe guttata HOM05D004763 ORTHO05D007492 0.0e+00 1110.5 670 83.9
PGR102G0325 Punica granatum HOM05D004763 ORTHO05D007492 0.0e+00 1110.5 668 84.6
FvH4_3g43550 Fragaria vesca HOM05D004763 ORTHO05D007492 0.0e+00 1110.1 662 83.5
Prupe.6G018600 Prunus persica HOM05D004763 ORTHO05D007492 0.0e+00 1109.7 685 82.0
MD03G1021100 Malus domestica HOM05D004763 ORTHO05D007492 0.0e+00 1102.0 674 82.5
AL3G34700 Arabidopsis lyrata HOM05D004763 ORTHO05D007492 0.0e+00 1101.7 668 81.7
Nitab4.5_0003069g0050 Nicotiana tabacum HOM05D004763 ORTHO05D007492 0.0e+00 1100.5 677 84.2
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 0.0e+00 1099.0 644 85.7
Carub.0003s2074 Capsella rubella HOM05D004763 ORTHO05D007492 0.0e+00 1097.8 668 81.4
AT3G20780 Arabidopsis thaliana HOM05D004763 ORTHO05D007492 0.0e+00 1097.4 668 81.4
FAN16G3272 Fragaria x ananassa HOM05D004763 ORTHO05D007492 0.0e+00 1096.3 672 82.0
BcaC05g28282 Brassica carinata HOM05D004763 ORTHO05D007492 0.0e+00 1095.5 665 81.5
C05p43300 Brassica napus HOM05D004763 ORTHO05D007492 0.0e+00 1094.7 665 81.4
Sabra03G0153800 Salix brachista HOM05D004763 ORTHO05D007492 0.0e+00 1093.2 647 83.9
Sabra03G0156000 Salix brachista HOM05D004763 ORTHO05D007492 0.0e+00 1093.2 647 83.9
Thhalv10020214m.g Eutrema salsugineum HOM05D004763 ORTHO05D007492 0.0e+00 1088.2 665 81.2
Sp3g18800 Schrenkiella parvula HOM05D004763 ORTHO05D007492 0.0e+00 1085.9 667 80.5
BcaB06g26148 Brassica carinata HOM05D004763 ORTHO05D007492 0.0e+00 1084.3 669 80.7
A05p28000 Brassica napus HOM05D004763 ORTHO05D007492 0.0e+00 1081.6 679 80.0
Actinidia39377 Actinidia chinensis HOM05D004763 ORTHO05D007492 4.6e-312 1074.3 669 83.3
SGA_v2.0_scaffold1G00797 Striga asiatica HOM05D004763 ORTHO05D007492 4.6e-312 1073.9 722 77.8
BraA05t21683Z Brassica rapa HOM05D004763 ORTHO05D007492 4.6e-312 1073.5 687 78.9
HPP92_020536 Vanilla planifolia HOM05D004763 ORTHO05D007492 1.8e-311 1072.0 663 79.5
ATR0605G091 Amborella trichopoda HOM05D004763 ORTHO05D007492 3.5e-310 1067.8 660 80.8
BolC5t33062H Brassica oleracea HOM05D004763 ORTHO05D007492 5.9e-310 1067.0 696 77.3
CDE04G0998 Ceratophyllum demersum HOM05D004763 ORTHO05D007492 5.2e-306 1053.9 641 81.7
Lsat_1_v5_gn_2_101121 Lactuca sativa HOM05D004763 ORTHO05D007492 3.7e-304 1047.7 690 79.1
Os09g0279600 Oryza sativa ssp. japonica HOM05D004763 ORTHO05D007492 6.6e-301 1036.9 646 78.6
Aa31LG8G7590 Aethionema arabicum HOM05D004763 ORTHO05D007492 1.2e-294 1016.1 644 79.5
Ah.04g161760 Amaranthus hybridus HOM05D004763 ORTHO05D007492 1.5e-289 999.2 668 77.8
Atru.chr3.2503 Acer truncatum HOM05D004763 ORTHO05D007492 3.9e-285 984.6 582 84.0
DCAR_024396 Daucus carota HOM05D004763 ORTHO05D007492 1.1e-284 983.0 673 76.7
Ca_01270_v3 Cicer arietinum L. HOM05D004763 ORTHO05D007492 1.4e-279 966.1 597 81.9
Pp3c22_12720 Physcomitrium patens HOM05D004763 ORTHO05D007492 1.9e-276 955.7 669 72.3
AagrBONN_evm.TU.Sc2ySwM_344.3405 Anthoceros agrestis HOM05D004763 ORTHO05D007492 9.9e-273 943.3 645 72.6
CARHR096610 Cardamine hirsuta HOM05D004763 ORTHO05D007492 9.9e-273 943.3 590 79.2
Mapoly0042s0060 Marchantia polymorpha HOM05D004763 ORTHO05D007492 1.2e-270 936.4 669 69.4
Aqoxy381s001 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 1.6e-270 936.0 654 75.2
Hma1.2p1_1169F.1_g263310 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 1.0e-269 933.3 509 90.8
SMO116G0144 Selaginella moellendorffii HOM05D004763 ORTHO05D007492 2.1e-267 925.6 658 70.8
Lj4g0010878 Lotus japonicus HOM05D004763 ORTHO05D007492 5.2e-266 921.0 668 73.2
FAN21G2003 Fragaria x ananassa HOM05D004763 ORTHO05D007492 6.6e-261 904.0 635 74.0
CBR_g31022 Chara braunii HOM05D004763 ORTHO05D007492 1.9e-260 902.5 675 67.1
FAN11G2145 Fragaria x ananassa HOM05D004763 ORTHO05D007492 2.6e-257 892.1 699 68.1
FAN11G0713 Fragaria x ananassa HOM05D004763 ORTHO05D007492 6.6e-253 877.5 699 67.1
Potri.T085401 Populus trichocarpa HOM05D004763 ORTHO05D007492 3.8e-232 808.5 445 89.0
Zm00001eb308780 Zea mays HOM05D004763 ORTHO05D007492 2.1e-214 749.6 462 77.5
Cre01.g019750 Chlamydomonas reinhardtii HOM05D004763 ORTHO05D007492 2.2e-200 703.0 669 55.2
SEGI_32015 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 3.8e-184 649.0 382 81.4
Lsat_1_v5_gn_1_127001 Lactuca sativa HOM05D004763 ORTHO05D007492 6.1e-182 641.7 535 64.1
ClCG02G023620 Citrullus lanatus HOM05D004763 ORTHO05D007492 4.0e-181 639.0 368 87.8
MBI01_g15753_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D007492 5.7e-180 635.2 364 87.4
PRCOL_00005940 Prasinoderma coloniale HOM05D004763 ORTHO05D007492 7.8e-177 624.8 675 50.5
CAN.G646.1 Capsicum annuum HOM05D004763 ORTHO05D007492 5.0e-176 622.1 360 87.5
PGSC0003DMG401029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 1.5e-175 620.5 381 84.0
MCO09G243 Micromonas commoda HOM05D004763 ORTHO05D007492 5.6e-175 618.6 668 50.9
Lju1319A4T15 Lonicera japonica HOM05D004763 ORTHO05D007492 1.6e-153 547.4 306 89.9
Lj1A366T12 Lonicera japonica HOM05D004763 ORTHO05D007492 5.2e-149 532.3 367 76.8
CAN.G442.1 Capsicum annuum HOM05D004763 ORTHO05D007492 1.9e-143 513.8 308 83.1
PGSC0003DMG402029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 7.3e-143 511.9 307 83.4
Lsat_1_v5_gn_1_127121 Lactuca sativa HOM05D004763 ORTHO05D007492 2.2e-139 500.4 630 49.4
Lj1C366G5 Lonicera japonica HOM05D004763 ORTHO05D007492 1.9e-122 444.1 298 78.2
Lsat_1_v5_gn_1_126981 Lactuca sativa HOM05D004763 ORTHO05D007492 1.3e-110 404.8 467 51.6
Actinidia06319 Actinidia chinensis HOM05D004763 ORTHO05D007492 2.8e-94 350.5 216 84.3
SEGI_39045 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 2.1e-81 307.8 217 71.0
Eucgr.B03660 Eucalyptus grandis HOM05D004763 ORTHO05D007492 1.7e-70 271.6 176 78.4
Lju1319C4G3 Lonicera japonica HOM05D004763 ORTHO05D014896 3.5e-60 237.3 243 59.3
TPR.G29743 Trifolium pratense HOM05D004763 ORTHO05D007492 2.2e-54 218.0 215 59.1
TPR.G29742 Trifolium pratense HOM05D004763 ORTHO05D007492 8.3e-54 216.1 248 51.6
Oeu036968.1 Olea europaea HOM05D004763 ORTHO05D007492 3.9e-51 207.2 104 90.4
Lsat_1_v5_gn_1_126941 Lactuca sativa HOM05D004763 ORTHO05D007492 8.1e-49 199.5 148 64.9
Lsat_1_v5_gn_1_127201 Lactuca sativa HOM05D004763 ORTHO05D007492 3.4e-39 167.5 401 33.9
Aa31LG8G7550 Aethionema arabicum HOM05D004763 ORTHO05D007492 4.1e-37 160.6 471 34.2
Lsat_1_v5_gn_1_127161 Lactuca sativa HOM05D004763 ORTHO05D007492 4.6e-36 157.1 150 58.0
Ca_01269_v3 Cicer arietinum L. HOM05D000073 ORTHO05D000033 6.6e-35 153.3 86 90.7
MBI09_g40619_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D019264 4.3e-34 150.6 87 83.9
MBI04_g09599_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 5.6e-34 150.2 87 83.9
MBI02_g24793_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 4.7e-33 147.1 87 82.8
Thecc.03G073800 Theobroma cacao HOM05D004763 ORTHO05D019264 1.7e-30 138.7 107 65.4
PGSC0003DMG400012096 Solanum tuberosum HOM05D004763 ORTHO05D014896 1.0e-27 129.4 86 79.1
PGSC0003DMG401017076 Solanum tuberosum HOM05D004763 ORTHO05D026177 6.2e-25 120.2 114 55.3
PGSC0003DMG400026817 Solanum tuberosum HOM05D004763 ORTHO05D026177 1.9e-21 108.6 82 75.6
Lju1319A4T14 Lonicera japonica HOM05D004763 ORTHO05D019264 1.0e-19 102.8 54 92.6
Sopen04g015550 Solanum pennellii HOM05D000004 ORTHO05D000002 2.3e-19 101.7 96 64.6
arahy.Tifrunner.gnm1.ann1.50I1V9 Arachis hypogaea HOM05D004763 ORTHO05D014896 3.9e-19 100.9 68 76.5
arahy.Tifrunner.gnm1.ann1.F7UR4V Arachis hypogaea HOM05D004763 ORTHO05D014896 3.9e-19 100.9 68 76.5
arahy.Tifrunner.gnm1.ann1.G1IAFF Arachis hypogaea HOM05D004763 ORTHO05D014896 5.1e-19 100.5 82 65.9
Lsat_1_v5_gn_3_118680 Lactuca sativa HOM05D004763 ORTHO05D007492 3.3e-18 97.8 55 85.5
Solyc11g028310.3 Solanum lycopersicum HOM05D004763 ORTHO05D026177 1.5e-15 89.0 63 77.8
Lsat_1_v5_gn_1_125620 Lactuca sativa HOM05D004763 ORTHO05D007492 1.3e-14 85.9 201 34.8
arahy.Tifrunner.gnm1.ann1.65KXHR Arachis hypogaea HOM05D004763 ORTHO05D014896 1.7e-14 85.5 49 87.8
TWI60G1170 Tripterygium wilfordii HOM05D004763 ORTHO05D014896 1.7e-14 85.5 49 87.8
arahy.Tifrunner.gnm1.ann1.YT3XVJ Arachis hypogaea HOM05D012186 ORTHO05D009594 7.1e-13 80.1 87 54.0
Solyc12g036030.1 Solanum lycopersicum HOM05D004763 ORTHO05D026177 3.5e-12 77.8 105 48.6
Lsat_1_v5_gn_1_126960 Lactuca sativa HOM05D004763 ORTHO05D012314 6.0e-12 77.0 68 52.9
Aa31LG8G7540 Aethionema arabicum HOM05D004763 ORTHO05D007492 6.7e-11 73.6 67 58.2
PGSC0003DMG400019106 Solanum tuberosum HOM05D004763 ORTHO05D007492 7.4e-10 70.1 37 86.5
PGSC0003DMG402017076 Solanum tuberosum HOM05D004763 ORTHO05D026177 1.8e-08 65.5 46 78.3
TPR.G18832 Trifolium pratense HOM05D006024 ORTHO05D007505 4.0e-08 64.3 44 68.2
Solyc11g028340.3 Solanum lycopersicum HOM05D004763 ORTHO05D019264 9.0e-08 63.2 50 60.0
RcHm_v2.0_Chr3g0472751 Rosa chinensis HOM05D004763 ORTHO05D344474 1.0e-06 59.7 38 84.2
Lsat_1_v5_gn_8_146221 Lactuca sativa HOM05D004763 ORTHO05D014896 2.9e-06 58.2 40 75.0
Solyc11g028350.1 Solanum lycopersicum HOM05D004763 ORTHO05D019264 3.8e-06 57.8 40 67.5


User provided reference genes

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