Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042321 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 1.5e-242 842.4 433 100.0
CSS0010787 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 2.3e-169 599.4 409 77.3
vmacro09128 Vaccinium macrocarpon HOM05D003161 ORTHO05D005173 2.6e-157 559.3 413 71.4
Rhsim04G0093500 Rhododendron simsii HOM05D003161 ORTHO05D005173 4.6e-154 548.5 434 67.7
Lj2C361G9 Lonicera japonica HOM05D003161 ORTHO05D005173 1.6e-151 540.0 409 69.9
QL07p025530 Quercus lobata HOM05D003161 ORTHO05D005173 2.9e-148 529.3 412 68.9
Dinv25021 Davidia involucrata HOM05D003161 ORTHO05D005173 4.9e-148 528.5 432 66.4
Cfa020115 Carpinus fangiana HOM05D003161 ORTHO05D005173 3.2e-147 525.8 429 65.3
Gohir.A09G130300 Gossypium hirsutum HOM05D003161 ORTHO05D005173 4.1e-147 525.4 413 67.6
PGSC0003DMG400008644 Solanum tuberosum HOM05D003161 ORTHO05D005173 4.1e-147 525.4 413 68.0
Gorai.006G145100 Gossypium raimondii HOM05D003161 ORTHO05D005173 7.1e-147 524.6 413 67.6
CAN.G479.45 Capsicum annuum HOM05D003161 ORTHO05D005173 1.6e-146 523.5 413 68.0
Ciclev10013867m.g Citrus clementina HOM05D003161 ORTHO05D005173 1.6e-146 523.5 411 68.1
Gohir.D09G126300 Gossypium hirsutum HOM05D003161 ORTHO05D005173 1.6e-146 523.5 409 67.7
GSVIVG01033430001 Vitis vinifera HOM05D003161 ORTHO05D005173 1.6e-146 523.5 346 75.7
Cpa.g.sc85.20 Carica papaya HOM05D003161 ORTHO05D005173 3.9e-145 518.8 429 64.3
TAR633G1132 Trochodendron aralioides HOM05D003161 ORTHO05D005173 3.9e-145 518.8 413 67.1
Haze_20072 Corylus avellana HOM05D003161 ORTHO05D005173 1.1e-144 517.3 433 64.0
Sopen03g011350 Solanum pennellii HOM05D003161 ORTHO05D005173 3.3e-144 515.8 414 67.4
Cc06_g23250 Coffea canephora HOM05D003161 ORTHO05D005173 4.3e-144 515.4 404 67.1
PSO384G1659 Papaver somniferum HOM05D003161 ORTHO05D005173 1.6e-143 513.5 348 73.0
Manes.09G040300 Manihot esculenta HOM05D003161 ORTHO05D005173 8.1e-143 511.1 393 67.7
PSO339G0479 Papaver somniferum HOM05D003161 ORTHO05D005173 1.1e-142 510.8 433 63.0
Solyc03g051900.4 Solanum lycopersicum HOM05D003161 ORTHO05D005173 3.1e-142 509.2 414 66.7
CiPaw.08G134900 Carya illinoinensis HOM05D003161 ORTHO05D005173 8.9e-142 507.7 410 66.6
SGA_v2.0_scaffold274G46506 Striga asiatica HOM05D003161 ORTHO05D005173 2.0e-141 506.5 429 64.8
Nitab4.5_0001364g0070 Nicotiana tabacum HOM05D003161 ORTHO05D005173 3.4e-141 505.8 410 67.1
MSTRG.26730 Avicennia marina HOM05D003161 ORTHO05D005173 4.9e-140 501.9 409 63.8
Thecc.05G180200 Theobroma cacao HOM05D003161 ORTHO05D005173 7.1e-139 498.0 407 66.6
Eucgr.A02507 Eucalyptus grandis HOM05D003161 ORTHO05D005173 4.6e-138 495.4 428 61.9
DCAR_016871 Daucus carota HOM05D003161 ORTHO05D005173 7.8e-138 494.6 405 66.4
Nitab4.5_0000571g0110 Nicotiana tabacum HOM05D003161 ORTHO05D005173 7.8e-138 494.6 413 65.9
TWI53G1521 Tripterygium wilfordii HOM05D003161 ORTHO05D005173 1.3e-137 493.8 437 62.2
Duzib128G1871 Durio zibethinus HOM05D003161 ORTHO05D005173 2.3e-137 493.0 409 65.5
VMungo0720G1738 Vigna mungo HOM05D003161 ORTHO05D005173 1.1e-136 490.7 408 63.2
Glyma.02G168900 Glycine max HOM05D003161 ORTHO05D005173 7.3e-136 488.0 408 64.2
Lsat_1_v5_gn_2_58000 Lactuca sativa HOM05D003161 ORTHO05D005173 9.6e-136 487.6 403 64.8
PGR004G2129 Punica granatum HOM05D003161 ORTHO05D005173 1.3e-135 487.3 406 64.0
Aqoxy2G02393 Aquilegia oxysepala HOM05D003161 ORTHO05D005173 2.1e-135 486.5 411 62.8
ClCG04G001230 Citrullus lanatus HOM05D003161 ORTHO05D005173 1.1e-134 484.2 429 61.3
Potri.016G062600 Populus trichocarpa HOM05D003161 ORTHO05D005173 1.4e-134 483.8 401 62.6
HanXRQChr14g0457761 Helianthus annuus HOM05D003161 ORTHO05D005173 2.0e-133 479.9 402 62.4
Sabra16G0064600 Salix brachista HOM05D003161 ORTHO05D005173 2.6e-133 479.6 346 69.9
Glyma.09G104000 Glycine max HOM05D003161 ORTHO05D005173 5.8e-133 478.4 404 62.9
Carub.0003s1130 Capsella rubella HOM05D003161 ORTHO05D005173 9.9e-133 477.6 414 62.1
AT3G11964 Arabidopsis thaliana HOM05D003161 ORTHO05D005173 2.2e-132 476.5 408 62.7
arahy.Tifrunner.gnm1.ann1.S31791 Arachis hypogaea HOM05D003161 ORTHO05D005173 2.2e-132 476.5 346 71.1
Lalb_Chr21g0316111 Lupinus albus HOM05D003161 ORTHO05D005173 2.9e-132 476.1 429 60.1
Atru.chr8.1220 Acer truncatum HOM05D003161 ORTHO05D005173 3.8e-132 475.7 383 65.5
BraA05t22538Z Brassica rapa HOM05D003161 ORTHO05D005173 3.8e-132 475.7 409 62.3
TWI74G1605 Tripterygium wilfordii HOM05D003161 ORTHO05D005173 3.8e-132 475.7 348 70.4
Prupe.7G085700 Prunus persica HOM05D003161 ORTHO05D005173 1.1e-131 474.2 409 62.8
Phvul.007G270000 Phaseolus vulgaris HOM05D003161 ORTHO05D005173 1.4e-131 473.8 404 62.6
arahy.Tifrunner.gnm1.ann1.PL5CUR Arachis hypogaea HOM05D003161 ORTHO05D005173 3.2e-131 472.6 346 70.8
PSO210G4351 Papaver somniferum HOM05D003161 ORTHO05D005173 2.1e-130 469.9 396 61.1
Aa31sc238G10 Aethionema arabicum HOM05D003161 ORTHO05D005173 4.6e-130 468.8 411 62.0
AUR62026957 Chenopodium quinoa HOM05D003161 ORTHO05D005173 1.3e-129 467.2 429 60.4
Lj5g0006535 Lotus japonicus HOM05D003161 ORTHO05D005173 5.1e-129 465.3 342 69.6
Hund19220 Selenicereus undatus HOM05D003161 ORTHO05D005173 6.6e-129 464.9 413 61.7
Migut.K00013 Erythranthe guttata HOM05D003161 ORTHO05D005173 8.7e-129 464.5 414 61.6
CARHR086520 Cardamine hirsuta HOM05D003161 ORTHO05D005173 1.1e-128 464.2 417 60.7
Hund19218 Selenicereus undatus HOM05D003161 ORTHO05D005173 4.3e-128 462.2 414 61.6
BcaC05g29306 Brassica carinata HOM05D003161 ORTHO05D005173 7.3e-128 461.5 415 60.0
Psat6g109960 Pisum sativum HOM05D003161 ORTHO05D005173 9.6e-128 461.1 408 61.0
MELO3C008994.2 Cucumis melo HOM05D003161 ORTHO05D005173 2.1e-127 459.9 429 60.4
THA.LOC104826779 Tarenaya hassleriana HOM05D003161 ORTHO05D005173 2.1e-127 459.9 410 61.0
Sp3g10190 Schrenkiella parvula HOM05D003161 ORTHO05D005173 3.6e-127 459.1 415 60.0
CsaV3_4G031200 Cucumis sativus L. HOM05D003161 ORTHO05D005173 4.8e-127 458.8 429 59.9
C05p55950 Brassica napus HOM05D003161 ORTHO05D005173 2.4e-126 456.4 415 60.0
BolC5t34262H Brassica oleracea HOM05D003161 ORTHO05D005173 2.4e-126 456.4 415 60.0
BcaB04g21101 Brassica carinata HOM05D003161 ORTHO05D005173 4.0e-126 455.7 411 59.9
BraA01t04149Z Brassica rapa HOM05D003161 ORTHO05D005173 4.0e-126 455.7 411 59.6
Thhalv10019877m.g Eutrema salsugineum HOM05D003161 ORTHO05D005173 5.3e-126 455.3 415 60.2
A05p37390 Brassica napus HOM05D003161 ORTHO05D005173 9.0e-126 454.5 415 59.3
Sc19g0006250 Simmondsia chinensis HOM05D003161 ORTHO05D005173 3.4e-125 452.6 427 57.6
ECA238G1915 Erigeron canadensis HOM05D003161 ORTHO05D005173 7.6e-125 451.4 403 60.5
AL3G23570 Arabidopsis lyrata HOM05D003161 ORTHO05D005173 9.9e-125 451.1 415 59.3
Os07g0203300 Oryza sativa ssp. japonica HOM05D003161 ORTHO05D005173 9.9e-125 451.1 398 61.8
CiPaw.08G134600 Carya illinoinensis HOM05D003161 ORTHO05D005173 1.7e-124 450.3 405 60.0
BcaC09g48184 Brassica carinata HOM05D003161 ORTHO05D005173 3.8e-124 449.1 411 58.9
BolC1t05277H Brassica oleracea HOM05D003161 ORTHO05D005173 3.8e-124 449.1 411 58.9
RcHm_v2.0_Chr3g0478661 Rosa chinensis HOM05D003161 ORTHO05D005173 3.8e-124 449.1 385 63.1
Medtr1g054710 Medicago truncatula HOM05D003161 ORTHO05D005173 8.4e-124 448.0 413 60.3
CANSAT64G2741 Cannabis sativa HOM05D003161 ORTHO05D005173 2.4e-123 446.4 415 59.3
Oeu046733.1 Olea europaea HOM05D003161 ORTHO05D005173 4.2e-123 445.7 402 61.4
Ca_25942_v3 Cicer arietinum L. HOM05D003161 ORTHO05D005173 9.3e-123 444.5 364 65.4
FAN02G0008 Fragaria x ananassa HOM05D003161 ORTHO05D005173 1.6e-122 443.7 414 58.7
EL10Ac7g16694 Beta vulgaris HOM05D003161 ORTHO05D005173 1.3e-121 440.7 431 58.0
FAN14G4107 Fragaria x ananassa HOM05D003161 ORTHO05D005173 1.3e-121 440.7 384 61.7
FvH4_6g21470 Fragaria vesca HOM05D003161 ORTHO05D005173 2.3e-121 439.9 385 61.8
FAN09G2861 Fragaria x ananassa HOM05D003161 ORTHO05D005173 1.1e-120 437.6 382 61.5
Zm00001eb302830 Zea mays HOM05D003161 ORTHO05D005173 1.1e-120 437.6 393 59.8
MD12G1051100 Malus domestica HOM05D003161 ORTHO05D005173 3.3e-120 436.0 435 56.6
FAN05G0820 Fragaria x ananassa HOM05D003161 ORTHO05D005173 1.3e-119 434.1 382 61.3
FAN05G2723 Fragaria x ananassa HOM05D003161 ORTHO05D005173 2.8e-119 433.0 382 61.0
CSS0043330 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 1.4e-118 430.6 383 65.5
CDE02G2929 Ceratophyllum demersum HOM05D003161 ORTHO05D005173 5.3e-118 428.7 432 53.9
ATR0737G016 Amborella trichopoda HOM05D003161 ORTHO05D005173 2.9e-116 422.9 449 52.3
HPP92_027318 Vanilla planifolia HOM05D003161 ORTHO05D005173 1.4e-115 420.6 399 57.4
Ah.15g091410 Amaranthus hybridus HOM05D003161 ORTHO05D005173 1.0e-113 414.5 406 56.4
SEGI_01045 Sequoiadendron giganteum HOM05D003161 ORTHO05D005173 5.7e-112 408.7 346 64.5
AUR62041563 Chenopodium quinoa HOM05D003161 ORTHO05D005173 3.1e-110 402.9 428 54.9
Peaxi162Scf00045g00223 Petunia axillaris HOM05D003161 ORTHO05D005173 9.0e-110 401.4 412 56.8
CSS0008153 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 3.9e-105 386.0 322 68.3
TPR.G14502 Trifolium pratense HOM05D003161 ORTHO05D005173 3.9e-105 386.0 425 51.5
Sed0016761 Sechium edule HOM05D003161 ORTHO05D005173 1.1e-104 384.4 278 71.9
Mapoly0019s0051 Marchantia polymorpha HOM05D003161 ORTHO05D005173 8.2e-103 378.3 437 49.7
MD14G1049800 Malus domestica HOM05D003161 ORTHO05D005173 3.1e-102 376.3 372 58.3
TWI74G0321 Tripterygium wilfordii HOM05D003161 ORTHO05D005173 1.0e-100 371.3 272 70.6
COL.COLO4_29434 Corchorus olitorius HOM05D003161 ORTHO05D005173 4.2e-99 365.9 399 54.4
Pp3c4_30330 Physcomitrium patens HOM05D003161 ORTHO05D005173 2.0e-93 347.1 332 56.6
SalBow1G2678 Salvia bowleyana HOM05D003161 ORTHO05D005173 2.0e-93 347.1 403 51.1
Zm00001eb302870 Zea mays HOM05D003161 ORTHO05D005173 5.0e-92 342.4 276 64.9
CBR_g22381 Chara braunii HOM05D003161 ORTHO05D005173 3.2e-91 339.7 290 58.6
SMO137G0021 Selaginella moellendorffii HOM05D003161 ORTHO05D005173 6.1e-90 335.5 438 45.4
CAN.G1433.27 Capsicum annuum HOM05D003161 ORTHO05D005173 2.3e-81 307.0 414 47.3
CAN.G317.8 Capsicum annuum HOM05D003161 ORTHO05D005173 2.0e-80 303.9 194 77.3
SHI30029 Sapria himalayana HOM05D003161 ORTHO05D005173 2.0e-80 303.9 305 53.4
BcaB06g25562 Brassica carinata HOM05D003161 ORTHO05D005173 1.4e-78 297.7 194 73.2
Actinidia05786 Actinidia chinensis HOM05D003161 ORTHO05D009570 2.0e-77 293.9 284 59.2
Cre10.g428750 Chlamydomonas reinhardtii HOM05D003161 ORTHO05D005173 1.7e-76 290.8 333 47.1
Aqoxy4G00694 Aquilegia oxysepala HOM05D003161 ORTHO05D005173 2.0e-72 277.3 348 49.4
Hund18983 Selenicereus undatus HOM05D003161 ORTHO05D005173 1.2e-69 268.1 333 47.4
unitig_744.g24086 Utricularia gibba HOM05D003161 ORTHO05D005173 1.6e-69 267.7 308 49.7
Actinidia38605 Actinidia chinensis HOM05D003161 ORTHO05D005173 1.5e-59 234.6 228 59.2
Hund18979 Selenicereus undatus HOM05D003161 ORTHO05D005173 3.6e-50 203.4 297 44.1
PRCOL_00005658 Prasinoderma coloniale HOM05D003161 ORTHO05D005173 2.6e-48 197.2 282 40.8
Cfa023914 Carpinus fangiana HOM05D003161 ORTHO05D005173 1.3e-44 184.9 293 38.2
Actinidia38606 Actinidia chinensis HOM05D003161 ORTHO05D005173 7.5e-40 169.1 151 61.6
Actinidia30948 Actinidia chinensis HOM05D003161 ORTHO05D005173 4.4e-32 143.3 110 66.4
Lsat_1_v5_gn_5_134001 Lactuca sativa HOM05D003161 ORTHO05D005173 2.3e-28 131.0 97 67.0
Lsat_1_v5_gn_9_24981 Lactuca sativa HOM05D009325 ORTHO05D005173 3.1e-25 120.6 79 74.7
HPP92_015876 Vanilla planifolia HOM05D003161 ORTHO05D005173 9.9e-24 115.5 100 63.0
Lsat_1_v5_gn_8_97781 Lactuca sativa HOM05D003161 ORTHO05D005173 1.0e-20 105.5 125 49.6
AagrBONN_evm.TU.Sc2ySwM_340.243 Anthoceros agrestis HOM05D003161 ORTHO05D005173 4.3e-11 73.6 145 34.5
Lsat_1_v5_gn_7_25100 Lactuca sativa HOM05D003161 ORTHO05D005173 2.6e-08 64.3 39 76.9
CSS0039736 Camellia sinensis var. sinensis HOM05D001338 ORTHO05D001239 1.9e-06 58.2 64 53.1
SMO111G0226 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 1.9e-06 58.2 170 35.3


User provided reference genes

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