Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040887 Camellia sinensis var. sinensis HOM05D000572 ORTHO05D002399 4.2e-68 261.2 124 100.0
CSS0045013 Camellia sinensis var. sinensis HOM05D000572 ORTHO05D002399 2.0e-54 215.7 145 75.9
CSS0020456 Camellia sinensis var. sinensis HOM05D000572 ORTHO05D002399 2.6e-54 215.3 140 77.1
CSS0016257 Camellia sinensis var. sinensis HOM05D000572 ORTHO05D002399 1.2e-35 153.3 113 70.8
CSS0042457 Camellia sinensis var. sinensis HOM05D000572 ORTHO05D002399 1.2e-35 153.3 113 70.8
Rhsim11G0118300 Rhododendron simsii HOM05D000572 ORTHO05D002399 1.7e-32 142.9 113 66.4
vmacro01683 Vaccinium macrocarpon HOM05D000572 ORTHO05D002399 1.7e-32 142.9 113 66.4
PGR119G1310 Punica granatum HOM05D000572 ORTHO05D002399 2.8e-32 142.1 113 66.4
Atru.chr1.1803 Acer truncatum HOM05D000572 ORTHO05D002399 3.7e-32 141.7 113 65.5
Dinv29626 Davidia involucrata HOM05D000572 ORTHO05D002399 3.7e-32 141.7 113 66.4
HanXRQChr04g0120041 Helianthus annuus HOM05D000572 ORTHO05D002399 4.8e-32 141.4 113 65.5
Hund15395 Selenicereus undatus HOM05D000572 ORTHO05D002399 8.2e-32 140.6 113 64.6
EL10Ac8g18295 Beta vulgaris HOM05D000572 ORTHO05D002399 1.4e-31 139.8 113 64.6
HPP92_005786 Vanilla planifolia HOM05D000572 ORTHO05D002399 1.4e-31 139.8 113 64.6
HanXRQChr11g0347301 Helianthus annuus HOM05D000572 ORTHO05D002399 1.8e-31 139.4 113 64.6
Lj2A766T19 Lonicera japonica HOM05D000572 ORTHO05D002399 1.8e-31 139.4 113 65.5
Atru.chr12.1878 Acer truncatum HOM05D000572 ORTHO05D002399 2.4e-31 139.0 113 64.6
Actinidia19530 Actinidia chinensis HOM05D000572 ORTHO05D002399 2.4e-31 139.0 113 64.6
Lj5A282T76 Lonicera japonica HOM05D000572 ORTHO05D002399 2.4e-31 139.0 113 63.7
Dinv19128 Davidia involucrata HOM05D000572 ORTHO05D002399 3.1e-31 138.7 112 65.2
Gohir.A05G373000 Gossypium hirsutum HOM05D000572 ORTHO05D002399 4.1e-31 138.3 113 63.7
Gorai.012G048000 Gossypium raimondii HOM05D000572 ORTHO05D002399 4.1e-31 138.3 113 63.7
Aa31LG11G8250 Aethionema arabicum HOM05D000572 ORTHO05D002399 5.3e-31 137.9 113 64.6
Dinv29674 Davidia involucrata HOM05D000572 ORTHO05D002399 5.3e-31 137.9 113 63.7
Eucgr.I00036 Eucalyptus grandis HOM05D000572 ORTHO05D002399 5.3e-31 137.9 113 63.7
CANSAT01G1917 Cannabis sativa HOM05D000572 ORTHO05D002399 7.0e-31 137.5 113 63.7
Cc07_g19880 Coffea canephora HOM05D000572 ORTHO05D002399 7.0e-31 137.5 113 61.9
Duzib160G0412 Durio zibethinus HOM05D000572 ORTHO05D002399 7.0e-31 137.5 113 62.8
PSO210G2968 Papaver somniferum HOM05D000572 ORTHO05D002399 9.1e-31 137.1 113 64.6
PSO447G0024 Papaver somniferum HOM05D000572 ORTHO05D002399 9.1e-31 137.1 113 64.6
AT4G14140 Arabidopsis thaliana HOM05D000572 ORTHO05D002399 1.2e-30 136.7 113 61.9
ClCG11G000400 Citrullus lanatus HOM05D000572 ORTHO05D002399 1.2e-30 136.7 113 63.7
CsaV3_5G013990 Cucumis sativus L. HOM05D000572 ORTHO05D002399 1.2e-30 136.7 113 63.7
Gohir.D04G042500 Gossypium hirsutum HOM05D000572 ORTHO05D002399 1.2e-30 136.7 113 62.8
SGA_v2.0_scaffold8G04469 Striga asiatica HOM05D000572 ORTHO05D002399 1.6e-30 136.3 113 61.9
arahy.Tifrunner.gnm1.ann1.5512QZ Arachis hypogaea HOM05D000572 ORTHO05D002399 2.0e-30 136.0 113 62.8
Glyma.04G187600 Glycine max HOM05D000572 ORTHO05D002399 2.0e-30 136.0 113 62.8
Glyma.06G178200 Glycine max HOM05D000572 ORTHO05D002399 2.0e-30 136.0 113 62.8
MBI03_g20877_MAGBIO Magnolia biondii HOM05D000572 ORTHO05D002399 2.0e-30 136.0 113 63.7
GSVIVG01000263001 Vitis vinifera HOM05D000572 ORTHO05D002399 2.0e-30 136.0 113 63.7
MSTRG.27892 Avicennia marina HOM05D000572 ORTHO05D002399 2.6e-30 135.6 113 61.9
Phvul.004G133200 Phaseolus vulgaris HOM05D000572 ORTHO05D002399 2.6e-30 135.6 113 62.8
Prupe.7G183100 Prunus persica HOM05D000572 ORTHO05D002399 2.6e-30 135.6 113 62.8
Lsat_1_v5_gn_7_75121 Lactuca sativa HOM05D000572 ORTHO05D002399 3.5e-30 135.2 113 63.7
VMungo0464G1362 Vigna mungo HOM05D000572 ORTHO05D002399 3.5e-30 135.2 113 62.8
GSVIVG01023152001 Vitis vinifera HOM05D000572 ORTHO05D002399 3.5e-30 135.2 113 61.1
arahy.Tifrunner.gnm1.ann1.I0VWWF Arachis hypogaea HOM05D000572 ORTHO05D002399 4.5e-30 134.8 113 61.9
Thhalv10000011m.g Eutrema salsugineum HOM05D000572 ORTHO05D002399 4.5e-30 134.8 113 61.9
Lalb_Chr01g0008651 Lupinus albus HOM05D000572 ORTHO05D002399 4.5e-30 134.8 113 61.9
Medtr2g046020 Medicago truncatula HOM05D000572 ORTHO05D002399 4.5e-30 134.8 113 62.8
Lj2g0020412 Lotus japonicus HOM05D000572 ORTHO05D002399 5.9e-30 134.4 113 62.8
Lj3g0025806 Lotus japonicus HOM05D000572 ORTHO05D002399 5.9e-30 134.4 113 62.8
Sed0009647 Sechium edule HOM05D000572 ORTHO05D002399 5.9e-30 134.4 113 62.8
CSS0046519 Camellia sinensis var. sinensis HOM05D000572 ORTHO05D002399 7.7e-30 134.0 109 67.9
SHI05188 Sapria himalayana HOM05D000572 ORTHO05D002399 7.7e-30 134.0 113 61.1
AUR62021310 Chenopodium quinoa HOM05D000572 ORTHO05D002399 1.0e-29 133.7 113 61.1
AUR62043444 Chenopodium quinoa HOM05D000572 ORTHO05D002399 1.0e-29 133.7 113 61.1
ECA236G0624 Erigeron canadensis HOM05D000572 ORTHO05D002399 1.0e-29 133.7 113 61.9
Medtr6g065580 Medicago truncatula HOM05D000572 ORTHO05D002399 1.0e-29 133.7 113 61.9
VMungo0464G1539 Vigna mungo HOM05D000572 ORTHO05D002399 1.0e-29 133.7 113 61.9
Nn5g27348 Nelumbo nucifera HOM05D000572 ORTHO05D002399 1.3e-29 133.3 113 61.9
Os03g0798300 Oryza sativa ssp. japonica HOM05D000572 ORTHO05D002399 1.3e-29 133.3 113 62.8
TPR.G12077 Trifolium pratense HOM05D000572 ORTHO05D002399 1.3e-29 133.3 113 61.9
CiPaw.12G053900 Carya illinoinensis HOM05D000572 ORTHO05D002399 1.7e-29 132.9 113 61.9
CDE12G0633 Ceratophyllum demersum HOM05D000572 ORTHO05D002399 1.7e-29 132.9 113 61.9
Haze_19377 Corylus avellana HOM05D000572 ORTHO05D002399 1.7e-29 132.9 113 62.8
Duzib147G0313 Durio zibethinus HOM05D000572 ORTHO05D002399 1.7e-29 132.9 113 61.1
Sc02g0000170 Simmondsia chinensis HOM05D000572 ORTHO05D002399 1.7e-29 132.9 113 59.3
Thecc.01G144800 Theobroma cacao HOM05D000572 ORTHO05D002399 1.7e-29 132.9 113 61.1
Ah.04g152120 Amaranthus hybridus HOM05D000572 ORTHO05D002399 2.2e-29 132.5 113 61.1
DCAR_003283 Daucus carota HOM05D000572 ORTHO05D002399 2.2e-29 132.5 113 61.1
MD02G1115100 Malus domestica HOM05D000572 ORTHO05D002399 2.2e-29 132.5 113 61.1
Prupe.7G060100 Prunus persica HOM05D000572 ORTHO05D002399 2.2e-29 132.5 113 61.9
Sp4g01970 Schrenkiella parvula HOM05D000572 ORTHO05D002399 2.2e-29 132.5 113 61.1
CAN.G1330.38 Capsicum annuum HOM05D000572 ORTHO05D002399 2.9e-29 132.1 113 60.2
AUR62028016 Chenopodium quinoa HOM05D000572 ORTHO05D002399 2.9e-29 132.1 113 59.3
MD15G1231100 Malus domestica HOM05D000572 ORTHO05D002399 2.9e-29 132.1 113 61.9
Psat1g114520 Pisum sativum HOM05D000572 ORTHO05D002399 2.9e-29 132.1 113 61.1
Solyc11g030600.3 Solanum lycopersicum HOM05D000572 ORTHO05D002399 2.9e-29 132.1 113 60.2
Sopen11g013460 Solanum pennellii HOM05D000572 ORTHO05D002399 2.9e-29 132.1 113 60.2
Lalb_Chr03g0033391 Lupinus albus HOM05D000572 ORTHO05D002399 5.0e-29 131.3 136 55.1
Oeu032220.1 Olea europaea HOM05D000572 ORTHO05D002399 6.5e-29 131.0 113 60.2
Oeu046383.1 Olea europaea HOM05D000572 ORTHO05D002399 6.5e-29 131.0 113 60.2
Aqoxy7G03575 Aquilegia oxysepala HOM05D000572 ORTHO05D002399 8.5e-29 130.6 113 60.2
AT4G08990 Arabidopsis thaliana HOM05D000572 ORTHO05D002399 8.5e-29 130.6 113 60.2
BcaC07g41015 Brassica carinata HOM05D000572 ORTHO05D002399 8.5e-29 130.6 113 60.2
A09p57170 Brassica napus HOM05D000572 ORTHO05D002399 8.5e-29 130.6 113 60.2
C08p40170 Brassica napus HOM05D000572 ORTHO05D002399 8.5e-29 130.6 113 60.2
BolC8t51587H Brassica oleracea HOM05D000572 ORTHO05D002399 8.5e-29 130.6 113 60.2
BraA09t41110Z Brassica rapa HOM05D000572 ORTHO05D002399 8.5e-29 130.6 113 60.2
Migut.N00875 Erythranthe guttata HOM05D000572 ORTHO05D002399 8.5e-29 130.6 113 59.3
SGA_v2.0_scaffold122G33283 Striga asiatica HOM05D000572 ORTHO05D002399 8.5e-29 130.6 113 60.2
TAR633G0967 Trochodendron aralioides HOM05D000572 ORTHO05D002399 8.5e-29 130.6 113 62.8
GSVIVG01000262001 Vitis vinifera HOM05D000572 ORTHO05D002399 8.5e-29 130.6 113 60.2
Nitab4.5_0004640g0010 Nicotiana tabacum HOM05D000572 ORTHO05D002399 1.1e-28 130.2 113 59.3
PGSC0003DMG400030941 Solanum tuberosum HOM05D000572 ORTHO05D002399 1.1e-28 130.2 113 59.3
THA.LOC104820805 Tarenaya hassleriana HOM05D000572 ORTHO05D002399 1.1e-28 130.2 113 61.1
TWI15G0599 Tripterygium wilfordii HOM05D000572 ORTHO05D002399 1.1e-28 130.2 113 61.1
CDE01G0823 Ceratophyllum demersum HOM05D000572 ORTHO05D002399 1.5e-28 129.8 110 60.0
Ca_03350_v3 Cicer arietinum L. HOM05D000572 ORTHO05D002399 1.5e-28 129.8 113 60.2
Ca_28418_v3 Cicer arietinum L. HOM05D000572 ORTHO05D002399 1.5e-28 129.8 113 60.2
Potri.004G134000 Populus trichocarpa HOM05D000572 ORTHO05D002399 1.5e-28 129.8 113 59.3
Potri.T046100 Populus trichocarpa HOM05D000572 ORTHO05D002399 1.5e-28 129.8 113 59.3
RcHm_v2.0_Chr2g0097141 Rosa chinensis HOM05D000572 ORTHO05D002399 1.5e-28 129.8 113 60.2
Manes.13G155232 Manihot esculenta HOM05D000572 ORTHO05D002399 1.9e-28 129.4 113 60.2
Zm00001eb301620 Zea mays HOM05D000572 ORTHO05D002399 1.9e-28 129.4 113 60.2
Zm00001eb301630 Zea mays HOM05D000572 ORTHO05D002399 1.9e-28 129.4 113 60.2
AL7G42980 Arabidopsis lyrata HOM05D000572 ORTHO05D002399 2.5e-28 129.0 113 60.2
DCAR_009626 Daucus carota HOM05D000572 ORTHO05D002399 2.5e-28 129.0 113 59.3
Os07g0182900 Oryza sativa ssp. japonica HOM05D000572 ORTHO05D002399 2.5e-28 129.0 113 60.2
Peaxi162Scf01053g00039 Petunia axillaris HOM05D000572 ORTHO05D002399 2.5e-28 129.0 113 59.3
Potri.018G138000 Populus trichocarpa HOM05D000572 ORTHO05D002399 2.5e-28 129.0 113 58.4
FvH4_1g10300 Fragaria vesca HOM05D000572 ORTHO05D002399 3.2e-28 128.6 113 59.3
FAN19G1502 Fragaria x ananassa HOM05D000572 ORTHO05D002399 3.2e-28 128.6 113 59.3
FAN26G0750 Fragaria x ananassa HOM05D000572 ORTHO05D002399 3.2e-28 128.6 113 59.3
Manes.13G119400 Manihot esculenta HOM05D000572 ORTHO05D002399 3.2e-28 128.6 113 59.3
QL10p035076 Quercus lobata HOM05D000572 ORTHO05D002399 3.2e-28 128.6 113 60.2
RcHm_v2.0_Chr5g0051581 Rosa chinensis HOM05D000572 ORTHO05D002399 3.2e-28 128.6 113 59.3
THA.LOC104823726 Tarenaya hassleriana HOM05D000572 ORTHO05D002399 3.2e-28 128.6 113 61.1
Ca_04146_v3 Cicer arietinum L. HOM05D000572 ORTHO05D002399 4.2e-28 128.3 113 59.3
Sabra04G0084200 Salix brachista HOM05D000572 ORTHO05D002399 4.2e-28 128.3 113 58.4
Sabra19G0000100 Salix brachista HOM05D000572 ORTHO05D002399 4.2e-28 128.3 113 58.4
Thhalv10003514m.g Eutrema salsugineum HOM05D000572 ORTHO05D002399 5.5e-28 127.9 109 61.5
ATR0584G123 Amborella trichopoda HOM05D000572 ORTHO05D002399 7.2e-28 127.5 113 58.4
TWI63G0302 Tripterygium wilfordii HOM05D000572 ORTHO05D002399 7.2e-28 127.5 113 58.4
Nitab4.5_0004345g0030 Nicotiana tabacum HOM05D000572 ORTHO05D002399 9.4e-28 127.1 113 58.4
Aqoxy1G02545 Aquilegia oxysepala HOM05D000572 ORTHO05D002399 1.2e-27 126.7 113 58.4
BcaNung05957 Brassica carinata HOM05D000572 ORTHO05D002399 1.2e-27 126.7 113 60.2
CAN.G868.5 Capsicum annuum HOM05D000572 ORTHO05D002399 1.2e-27 126.7 113 58.4
DCAR_019941 Daucus carota HOM05D000572 ORTHO05D002399 1.2e-27 126.7 113 58.4
AT5G49160 Arabidopsis thaliana HOM05D000572 ORTHO05D002399 1.6e-27 126.3 109 60.6
BcaB06g27851 Brassica carinata HOM05D000572 ORTHO05D002399 1.6e-27 126.3 113 58.4
AL8G22690 Arabidopsis lyrata HOM05D000572 ORTHO05D002399 2.1e-27 125.9 109 60.6
A06p38240 Brassica napus HOM05D000572 ORTHO05D002399 2.1e-27 125.9 113 59.3
C07p39990 Brassica napus HOM05D000572 ORTHO05D002399 2.1e-27 125.9 113 59.3
BolC7t44532H Brassica oleracea HOM05D000572 ORTHO05D002399 2.1e-27 125.9 113 59.3
BraA06t26739Z Brassica rapa HOM05D000572 ORTHO05D002399 2.1e-27 125.9 113 59.3
CARHR182500 Cardamine hirsuta HOM05D000572 ORTHO05D002399 2.7e-27 125.6 109 60.6
SMO358G0070 Selaginella moellendorffii HOM05D000572 ORTHO05D002399 2.7e-27 125.6 127 52.8
unitig_26.g9010 Utricularia gibba HOM05D000572 ORTHO05D002399 2.7e-27 125.6 113 57.5
BcaC02g08585 Brassica carinata HOM05D000572 ORTHO05D002399 6.1e-27 124.4 113 55.8
A04p17510 Brassica napus HOM05D000572 ORTHO05D002399 6.1e-27 124.4 113 55.8
C04p52290 Brassica napus HOM05D000572 ORTHO05D002399 6.1e-27 124.4 113 55.8
BolC4t26803H Brassica oleracea HOM05D000572 ORTHO05D002399 6.1e-27 124.4 113 55.8
BraA04t17374Z Brassica rapa HOM05D000572 ORTHO05D002399 6.1e-27 124.4 113 55.8
SEGI_08948 Sequoiadendron giganteum HOM05D001165 ORTHO05D002399 6.1e-27 124.4 123 57.7
Carub.0008s0898 Capsella rubella HOM05D000572 ORTHO05D002399 8.0e-27 124.0 109 59.6
Carub.0004s0387 Capsella rubella HOM05D000572 ORTHO05D002399 1.0e-26 123.6 113 58.4
AL7G42360 Arabidopsis lyrata HOM05D000572 ORTHO05D002399 1.4e-26 123.2 109 60.6
Lj5g0006387 Lotus japonicus HOM05D000572 ORTHO05D002399 1.4e-26 123.2 113 58.4
SEGI_11646 Sequoiadendron giganteum HOM05D000572 ORTHO05D002399 1.4e-26 123.2 123 56.9
CARHR070510 Cardamine hirsuta HOM05D000572 ORTHO05D002399 6.7e-26 120.9 109 57.8
Mapoly0038s0027 Marchantia polymorpha HOM05D000572 ORTHO05D002399 6.7e-26 120.9 123 52.8
SEGI_36703 Sequoiadendron giganteum HOM05D000572 ORTHO05D002399 6.7e-26 120.9 122 56.6
Ah.01g020670 Amaranthus hybridus HOM05D000572 ORTHO05D002399 8.8e-26 120.6 113 55.8
BcaC06g30720 Brassica carinata HOM05D000572 ORTHO05D002399 8.8e-26 120.6 113 57.5
Pp3c11_20540 Physcomitrium patens HOM05D000572 ORTHO05D002399 1.1e-25 120.2 123 52.0
AT4G13610 Arabidopsis thaliana HOM05D000572 ORTHO05D002399 1.5e-25 119.8 113 55.8
Cc02_g23510 Coffea canephora HOM05D000572 ORTHO05D002399 4.4e-25 118.2 113 55.8
Thhalv10005683m.g Eutrema salsugineum HOM05D000572 ORTHO05D002399 9.7e-25 117.1 109 59.6
AagrBONN_evm.TU.Sc2ySwM_368.2421 Anthoceros agrestis HOM05D000572 ORTHO05D002399 2.2e-24 115.9 109 55.0
Ca_01148_v3 Cicer arietinum L. HOM05D000572 ORTHO05D002399 4.1e-23 111.7 70 75.7
COL.COLO4_12145 Corchorus olitorius HOM05D000572 ORTHO05D002399 1.2e-22 110.2 66 78.8
Ca_03370_v3 Cicer arietinum L. HOM05D000572 ORTHO05D002399 1.6e-22 109.8 66 78.8
Carub.0007s2893 Capsella rubella HOM05D000572 ORTHO05D002399 3.5e-22 108.6 113 54.0
Sp2g19890 Schrenkiella parvula HOM05D000572 ORTHO05D002399 3.5e-22 108.6 127 48.8
TAR628G1524 Trochodendron aralioides HOM05D000572 ORTHO05D002399 1.3e-21 106.7 113 55.8
CARHR287790 Cardamine hirsuta HOM05D000572 ORTHO05D002399 5.0e-21 104.8 109 54.1
CARHR185450 Cardamine hirsuta HOM05D000572 ORTHO05D002399 7.2e-20 100.9 109 48.6
Cpa.g.sc37.192 Carica papaya HOM05D000572 ORTHO05D002399 1.6e-19 99.8 60 78.3
Cre10.g461750 Chlamydomonas reinhardtii HOM05D000572 ORTHO05D002399 3.7e-16 88.6 113 38.9
GSVIVG01023383001 Vitis vinifera HOM05D000572 ORTHO05D002399 8.3e-16 87.4 57 71.9
TAR525G0001 Trochodendron aralioides HOM05D000572 ORTHO05D002399 1.1e-15 87.0 105 44.8
GSVIVG01022824001 Vitis vinifera HOM05D000572 ORTHO05D002399 1.0e-13 80.5 57 68.4
GSVIVG01023370001 Vitis vinifera HOM05D000572 ORTHO05D002399 1.9e-12 76.3 52 69.2
HPP92_005803 Vanilla planifolia HOM05D000572 ORTHO05D002399 1.0e-10 70.5 113 40.7
TPR.G2802 Trifolium pratense HOM05D000572 ORTHO05D002399 3.0e-10 68.9 48 60.4
DCAR_030658 Daucus carota HOM05D000572 ORTHO05D002399 1.5e-09 66.6 113 36.3
Cre06.g286650 Chlamydomonas reinhardtii HOM05D001165 ORTHO05D002399 4.4e-09 65.1 66 48.5
DCAR_022618 Daucus carota HOM05D000572 ORTHO05D002399 2.2e-08 62.8 113 35.4
CSS0037434 Camellia sinensis var. sinensis HOM05D000572 ORTHO05D002399 1.2e-06 57.0 98 40.8
TPR.G37023 Trifolium pratense HOM05D000572 ORTHO05D002399 2.0e-06 56.2 64 46.9
DCAR_021657 Daucus carota HOM05D000572 ORTHO05D002399 3.5e-06 55.5 98 35.7


User provided reference genes

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