Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040264 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 3.3e-124 448.4 220 100.0
CSS0010787 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 1.2e-115 419.9 218 95.0
CSS0043330 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 1.6e-115 419.5 212 96.7
Dinv25021 Davidia involucrata HOM05D003161 ORTHO05D005173 7.4e-84 314.3 212 72.6
Actinidia38605 Actinidia chinensis HOM05D003161 ORTHO05D005173 1.4e-82 310.1 212 72.2
vmacro09128 Vaccinium macrocarpon HOM05D003161 ORTHO05D005173 3.1e-82 308.9 211 73.5
Rhsim04G0093500 Rhododendron simsii HOM05D003161 ORTHO05D005173 2.9e-80 302.4 220 67.7
Peaxi162Scf00045g00223 Petunia axillaris HOM05D003161 ORTHO05D005173 1.2e-70 270.4 213 62.9
TAR633G1132 Trochodendron aralioides HOM05D003161 ORTHO05D005173 6.7e-69 264.6 209 62.7
Gohir.D09G126300 Gossypium hirsutum HOM05D003161 ORTHO05D005173 9.7e-68 260.8 204 59.8
Gorai.006G145100 Gossypium raimondii HOM05D003161 ORTHO05D005173 2.2e-67 259.6 205 59.0
Gohir.A09G130300 Gossypium hirsutum HOM05D003161 ORTHO05D005173 3.7e-67 258.8 202 59.4
Thecc.05G180200 Theobroma cacao HOM05D003161 ORTHO05D005173 3.7e-67 258.8 213 58.2
GSVIVG01033430001 Vitis vinifera HOM05D003161 ORTHO05D005173 4.8e-67 258.5 217 59.9
Haze_20072 Corylus avellana HOM05D003161 ORTHO05D005173 1.4e-66 256.9 209 59.3
Prupe.7G085700 Prunus persica HOM05D003161 ORTHO05D005173 3.1e-66 255.8 202 58.9
MSTRG.26730 Avicennia marina HOM05D003161 ORTHO05D005173 9.0e-66 254.2 217 59.4
QL07p025530 Quercus lobata HOM05D003161 ORTHO05D005173 1.5e-65 253.4 212 59.0
Nitab4.5_0000571g0110 Nicotiana tabacum HOM05D003161 ORTHO05D005173 2.0e-65 253.1 208 61.1
TWI53G1521 Tripterygium wilfordii HOM05D003161 ORTHO05D005173 4.5e-65 251.9 202 61.4
CAN.G479.45 Capsicum annuum HOM05D003161 ORTHO05D005173 5.9e-65 251.5 203 61.1
Cc06_g23250 Coffea canephora HOM05D003161 ORTHO05D005173 5.9e-65 251.5 198 63.6
Nitab4.5_0001364g0070 Nicotiana tabacum HOM05D003161 ORTHO05D005173 5.9e-65 251.5 208 61.5
CANSAT64G2741 Cannabis sativa HOM05D003161 ORTHO05D005173 1.0e-64 250.8 202 59.4
Manes.09G040300 Manihot esculenta HOM05D003161 ORTHO05D005173 1.0e-64 250.8 205 60.0
Cfa020115 Carpinus fangiana HOM05D003161 ORTHO05D005173 1.3e-64 250.4 209 59.3
THA.LOC104826779 Tarenaya hassleriana HOM05D003161 ORTHO05D005173 1.3e-64 250.4 207 58.0
MD12G1051100 Malus domestica HOM05D003161 ORTHO05D005173 2.9e-64 249.2 228 55.3
DCAR_016871 Daucus carota HOM05D003161 ORTHO05D005173 8.5e-64 247.7 204 59.3
Duzib128G1871 Durio zibethinus HOM05D003161 ORTHO05D005173 8.5e-64 247.7 208 55.3
CAN.G317.9 Capsicum annuum HOM05D003161 ORTHO05D005173 1.9e-63 246.5 195 63.1
PGSC0003DMG400008644 Solanum tuberosum HOM05D003161 ORTHO05D005173 2.5e-63 246.1 210 61.0
COL.COLO4_29434 Corchorus olitorius HOM05D003161 ORTHO05D005173 5.5e-63 245.0 195 60.5
Ciclev10013867m.g Citrus clementina HOM05D003161 ORTHO05D005173 7.2e-63 244.6 210 59.0
Cpa.g.sc85.20 Carica papaya HOM05D003161 ORTHO05D005173 9.4e-63 244.2 208 57.2
Lj2C361G9 Lonicera japonica HOM05D003161 ORTHO05D005173 1.6e-62 243.4 190 60.5
Solyc03g051900.4 Solanum lycopersicum HOM05D003161 ORTHO05D005173 1.6e-62 243.4 199 60.8
Sopen03g011350 Solanum pennellii HOM05D003161 ORTHO05D005173 1.6e-62 243.4 199 60.8
FAN09G2861 Fragaria x ananassa HOM05D003161 ORTHO05D005173 4.6e-62 241.9 211 56.4
Potri.016G062600 Populus trichocarpa HOM05D003161 ORTHO05D005173 4.6e-62 241.9 210 57.1
Hund19220 Selenicereus undatus HOM05D003161 ORTHO05D005173 4.6e-62 241.9 202 60.9
FAN05G2723 Fragaria x ananassa HOM05D003161 ORTHO05D005173 6.1e-62 241.5 211 55.9
Eucgr.A02507 Eucalyptus grandis HOM05D003161 ORTHO05D005173 7.9e-62 241.1 205 56.6
FAN14G4107 Fragaria x ananassa HOM05D003161 ORTHO05D005173 1.4e-61 240.4 210 56.7
RcHm_v2.0_Chr3g0478661 Rosa chinensis HOM05D003161 ORTHO05D005173 1.8e-61 240.0 209 56.0
Ah.15g091410 Amaranthus hybridus HOM05D003161 ORTHO05D005173 2.3e-61 239.6 194 57.2
Lj5g0006535 Lotus japonicus HOM05D003161 ORTHO05D005173 2.3e-61 239.6 192 59.4
Oeu046733.1 Olea europaea HOM05D003161 ORTHO05D005173 2.3e-61 239.6 204 60.8
FvH4_6g21470 Fragaria vesca HOM05D003161 ORTHO05D005173 3.0e-61 239.2 210 56.2
Glyma.09G104000 Glycine max HOM05D003161 ORTHO05D005173 5.1e-61 238.4 207 56.5
Hund19218 Selenicereus undatus HOM05D003161 ORTHO05D005173 6.7e-61 238.0 191 61.8
Atru.chr8.1220 Acer truncatum HOM05D003161 ORTHO05D005173 8.8e-61 237.7 200 58.5
CiPaw.08G134900 Carya illinoinensis HOM05D003161 ORTHO05D005173 1.1e-60 237.3 208 56.7
FAN05G0820 Fragaria x ananassa HOM05D003161 ORTHO05D005173 1.1e-60 237.3 211 55.0
Migut.K00013 Erythranthe guttata HOM05D003161 ORTHO05D005173 2.0e-60 236.5 206 58.7
FAN02G0008 Fragaria x ananassa HOM05D003161 ORTHO05D005173 2.0e-60 236.5 211 55.0
Psat6g109960 Pisum sativum HOM05D003161 ORTHO05D005173 2.6e-60 236.1 192 59.9
Glyma.02G168900 Glycine max HOM05D003161 ORTHO05D005173 3.3e-60 235.7 207 57.0
SalBow1G2678 Salvia bowleyana HOM05D003161 ORTHO05D005173 3.3e-60 235.7 195 62.6
Medtr1g054710 Medicago truncatula HOM05D003161 ORTHO05D005173 4.4e-60 235.3 210 56.2
PGR004G2129 Punica granatum HOM05D003161 ORTHO05D005173 4.8e-59 231.9 209 56.0
Lalb_Chr21g0316111 Lupinus albus HOM05D003161 ORTHO05D005173 6.3e-59 231.5 204 57.8
arahy.Tifrunner.gnm1.ann1.PL5CUR Arachis hypogaea HOM05D003161 ORTHO05D005173 1.4e-58 230.3 211 56.9
ECA238G1915 Erigeron canadensis HOM05D003161 ORTHO05D005173 1.8e-58 229.9 193 59.1
Sc19g0006250 Simmondsia chinensis HOM05D003161 ORTHO05D005173 4.1e-58 228.8 192 58.9
TPR.G14502 Trifolium pratense HOM05D003161 ORTHO05D005173 5.3e-58 228.4 192 57.3
arahy.Tifrunner.gnm1.ann1.S31791 Arachis hypogaea HOM05D003161 ORTHO05D005173 6.9e-58 228.0 211 56.4
SGA_v2.0_scaffold274G46506 Striga asiatica HOM05D003161 ORTHO05D005173 1.5e-57 226.9 201 57.2
Sabra16G0064600 Salix brachista HOM05D003161 ORTHO05D005173 2.0e-57 226.5 210 55.2
VMungo0720G1738 Vigna mungo HOM05D003161 ORTHO05D005173 2.0e-57 226.5 193 57.5
BcaC05g29306 Brassica carinata HOM05D003161 ORTHO05D005173 2.6e-57 226.1 209 51.2
C05p55950 Brassica napus HOM05D003161 ORTHO05D005173 2.6e-57 226.1 209 51.2
BolC5t34262H Brassica oleracea HOM05D003161 ORTHO05D005173 2.6e-57 226.1 209 51.2
MELO3C008994.2 Cucumis melo HOM05D003161 ORTHO05D005173 2.6e-57 226.1 213 53.5
Carub.0003s1130 Capsella rubella HOM05D003161 ORTHO05D005173 3.4e-57 225.7 211 52.1
Sp3g10190 Schrenkiella parvula HOM05D003161 ORTHO05D005173 4.5e-57 225.3 211 51.7
Lsat_1_v5_gn_2_58000 Lactuca sativa HOM05D003161 ORTHO05D005173 2.9e-56 222.6 189 56.6
Aa31sc238G10 Aethionema arabicum HOM05D003161 ORTHO05D005173 3.8e-56 222.2 210 52.4
Ca_25942_v3 Cicer arietinum L. HOM05D003161 ORTHO05D005173 5.0e-56 221.9 192 56.8
EL10Ac7g16694 Beta vulgaris HOM05D003161 ORTHO05D005173 1.1e-55 220.7 220 49.1
BcaB04g21101 Brassica carinata HOM05D003161 ORTHO05D005173 1.1e-55 220.7 209 52.2
AT3G11964 Arabidopsis thaliana HOM05D003161 ORTHO05D005173 4.2e-55 218.8 200 53.0
CDE02G2929 Ceratophyllum demersum HOM05D003161 ORTHO05D005173 4.2e-55 218.8 191 57.6
HanXRQChr14g0457761 Helianthus annuus HOM05D003161 ORTHO05D005173 4.2e-55 218.8 218 52.3
BcaC09g48184 Brassica carinata HOM05D003161 ORTHO05D005173 5.5e-55 218.4 208 50.5
BolC1t05277H Brassica oleracea HOM05D003161 ORTHO05D005173 5.5e-55 218.4 210 50.5
Thhalv10019877m.g Eutrema salsugineum HOM05D003161 ORTHO05D005173 1.2e-54 217.2 209 49.3
BraA01t04149Z Brassica rapa HOM05D003161 ORTHO05D005173 1.6e-54 216.9 216 49.1
BraA05t22538Z Brassica rapa HOM05D003161 ORTHO05D005173 1.6e-54 216.9 216 49.1
AL3G23570 Arabidopsis lyrata HOM05D003161 ORTHO05D005173 2.1e-54 216.5 217 49.8
A05p37390 Brassica napus HOM05D003161 ORTHO05D005173 7.9e-54 214.5 218 48.6
AUR62041563 Chenopodium quinoa HOM05D003161 ORTHO05D005173 3.0e-53 212.6 195 52.8
PSO339G0479 Papaver somniferum HOM05D003161 ORTHO05D005173 5.2e-53 211.8 215 50.2
Aqoxy2G02393 Aquilegia oxysepala HOM05D003161 ORTHO05D005173 6.7e-53 211.5 209 51.7
PSO384G1659 Papaver somniferum HOM05D003161 ORTHO05D005173 2.0e-52 209.9 215 49.3
Phvul.007G270000 Phaseolus vulgaris HOM05D003161 ORTHO05D005173 2.0e-52 209.9 203 51.7
CsaV3_4G031200 Cucumis sativus L. HOM05D003161 ORTHO05D005173 3.3e-52 209.1 213 51.2
MD14G1050000 Malus domestica HOM05D003161 ORTHO05D005173 7.0e-50 201.4 194 53.6
ClCG04G001230 Citrullus lanatus HOM05D003161 ORTHO05D005173 2.6e-49 199.5 214 49.1
CARHR086520 Cardamine hirsuta HOM05D003161 ORTHO05D005173 8.5e-48 194.5 207 46.4
AUR62026957 Chenopodium quinoa HOM05D003161 ORTHO05D005173 1.1e-47 194.1 188 50.5
Zm00001eb302830 Zea mays HOM05D003161 ORTHO05D005173 1.1e-47 194.1 197 48.7
Sed0016761 Sechium edule HOM05D003161 ORTHO05D005173 4.0e-45 185.7 200 47.0
HPP92_027317 Vanilla planifolia HOM05D003161 ORTHO05D005173 8.8e-45 184.5 200 47.5
ATR0737G016 Amborella trichopoda HOM05D003161 ORTHO05D005173 2.0e-44 183.3 195 48.2
Hund18982 Selenicereus undatus HOM05D003161 ORTHO05D005173 1.8e-42 176.8 197 52.3
SHI30029 Sapria himalayana HOM05D003161 ORTHO05D005173 3.1e-42 176.0 199 45.2
SEGI_01045 Sequoiadendron giganteum HOM05D003161 ORTHO05D005173 1.0e-40 171.0 216 41.2
Pp3c4_30330 Physcomitrium patens HOM05D003161 ORTHO05D005173 3.5e-33 146.0 212 35.8
Mapoly0019s0051 Marchantia polymorpha HOM05D003161 ORTHO05D005173 8.5e-32 141.4 204 37.7
AagrBONN_evm.TU.Sc2ySwM_340.243 Anthoceros agrestis HOM05D003161 ORTHO05D005173 1.6e-30 137.1 195 37.9
SMO137G0021 Selaginella moellendorffii HOM05D003161 ORTHO05D005173 8.0e-30 134.8 188 37.2
Ah.15g091660 Amaranthus hybridus HOM05D003161 ORTHO05D005173 1.5e-28 130.6 97 63.9
CAN.G2759.1 Capsicum annuum HOM05D003161 ORTHO05D005173 2.4e-26 123.2 209 39.7
Os07g0203300 Oryza sativa ssp. japonica HOM05D003161 ORTHO05D005173 3.1e-26 122.9 143 44.8
Aa31LG3G5540 Aethionema arabicum HOM05D003161 ORTHO05D005173 5.9e-25 118.6 206 35.9
unitig_744.g24086 Utricularia gibba HOM05D003161 ORTHO05D005173 2.9e-24 116.3 141 41.8
Lsat_1_v5_gn_5_134021 Lactuca sativa HOM05D003161 ORTHO05D005173 1.0e-21 107.8 71 66.2
HanXRQChr13g0388021 Helianthus annuus HOM05D003161 ORTHO05D005173 2.6e-20 103.2 69 66.7
SMO200G0255 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 1.3e-11 74.3 198 24.7
HPP92_015877 Vanilla planifolia HOM05D003161 ORTHO05D005173 2.9e-11 73.2 90 44.4
SMO111G0100 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 4.9e-11 72.4 178 25.3
Aqoxy2G00460 Aquilegia oxysepala HOM05D005887 ORTHO05D007694 6.4e-11 72.0 64 53.1
SMO111G0027 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 6.4e-11 72.0 189 24.9
SMO111G0226 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 2.4e-10 70.1 193 25.4
SMO083G0001 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 3.2e-10 69.7 139 30.2
SMO083G0010 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 1.2e-09 67.8 195 23.1
SMO160G0005 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 3.9e-08 62.8 140 30.0
SMO111G0064 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 5.6e-07 58.9 193 21.8
SMO140G0090 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 1.2e-06 57.8 191 23.6
SMO140G0066 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 3.6e-06 56.2 197 23.9


User provided reference genes

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