Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040168 Camellia sinensis var. sinensis HOM05D001053 ORTHO05D008021 4.2e-68 261.2 124 100.0
CSS0018152 Camellia sinensis var. sinensis HOM05D001053 ORTHO05D008021 1.0e-66 256.5 122 98.4
vmacro12791 Vaccinium macrocarpon HOM05D001053 ORTHO05D008021 5.1e-34 147.9 186 47.3
Prupe.4G272300 Prunus persica HOM05D001053 ORTHO05D008021 1.1e-31 140.2 121 57.0
MD01G1005700 Malus domestica HOM05D001053 ORTHO05D008021 1.6e-30 136.3 125 55.2
QL10p043267 Quercus lobata HOM05D001053 ORTHO05D008021 1.0e-29 133.7 127 54.3
Duzib264G1089 Durio zibethinus HOM05D001053 ORTHO05D008021 1.3e-29 133.3 123 52.8
QL10p043184 Quercus lobata HOM05D001053 ORTHO05D008021 1.7e-29 132.9 119 55.5
GSVIVG01026467001 Vitis vinifera HOM05D001053 ORTHO05D008021 2.2e-29 132.5 120 58.3
Duzib264G0077 Durio zibethinus HOM05D001053 ORTHO05D008021 2.9e-29 132.1 123 52.0
CiPaw.03G120300 Carya illinoinensis HOM05D001053 ORTHO05D008021 3.8e-29 131.7 110 54.5
Gorai.012G036200 Gossypium raimondii HOM05D001053 ORTHO05D008021 5.0e-29 131.3 122 50.8
Gohir.D04G031900 Gossypium hirsutum HOM05D001053 ORTHO05D008021 8.5e-29 130.6 122 50.8
COL.COLO4_35764 Corchorus olitorius HOM05D001053 ORTHO05D008021 1.1e-28 130.2 123 50.4
Gohir.A05G383400 Gossypium hirsutum HOM05D001053 ORTHO05D008021 1.9e-28 129.4 122 50.0
Dinv24384 Davidia involucrata HOM05D001053 ORTHO05D008021 5.5e-28 127.9 123 57.7
QL10p043125 Quercus lobata HOM05D001053 ORTHO05D008021 7.2e-28 127.5 119 53.8
Haze_25261 Corylus avellana HOM05D001053 ORTHO05D008021 3.6e-27 125.2 107 56.1
TAR628G1683 Trochodendron aralioides HOM05D001053 ORTHO05D008021 6.7e-26 120.9 112 54.5
Ciclev10001184m.g Citrus clementina HOM05D001053 ORTHO05D008021 8.8e-26 120.6 120 50.8
PGR102G3106 Punica granatum HOM05D001053 ORTHO05D008021 7.5e-25 117.5 125 52.0
TWI79G0588 Tripterygium wilfordii HOM05D001053 ORTHO05D008021 6.3e-24 114.4 122 50.0
FvH4_1g24510 Fragaria vesca HOM05D001053 ORTHO05D008021 2.4e-23 112.5 124 50.0
FAN19G0875 Fragaria x ananassa HOM05D001053 ORTHO05D008021 2.4e-23 112.5 124 50.0
Nn5g28508 Nelumbo nucifera HOM05D001053 ORTHO05D008021 2.4e-23 112.5 123 48.0
Atru.chr4.871 Acer truncatum HOM05D001053 ORTHO05D008021 5.3e-23 111.3 124 48.4
Ca_17631_v3 Cicer arietinum L. HOM05D001053 ORTHO05D008021 2.0e-22 109.4 117 47.9
Psat7g045760 Pisum sativum HOM05D001053 ORTHO05D008021 2.7e-22 109.0 120 50.0
RcHm_v2.0_Chr2g0121851 Rosa chinensis HOM05D001053 ORTHO05D008021 3.5e-22 108.6 114 50.0
Cpa.g.sc42.168 Carica papaya HOM05D001053 ORTHO05D008021 2.5e-20 102.4 85 60.0
FAN28G2289 Fragaria x ananassa HOM05D001053 ORTHO05D008021 4.2e-20 101.7 98 55.1
Sc19g0005860 Simmondsia chinensis HOM05D001053 ORTHO05D008021 9.4e-20 100.5 122 44.3
Manes.12G156900 Manihot esculenta HOM05D001053 ORTHO05D008021 6.1e-19 97.8 106 49.1
Medtr8g093800 Medicago truncatula HOM05D001053 ORTHO05D008021 3.0e-18 95.5 115 47.8
SalBow1G2034 Salvia bowleyana HOM05D001053 ORTHO05D008021 3.0e-18 95.5 121 42.1
THA.LOC104819490 Tarenaya hassleriana HOM05D001053 ORTHO05D008021 5.2e-18 94.7 120 45.8
Thecc.01G134400 Theobroma cacao HOM05D001053 ORTHO05D008021 6.8e-18 94.4 84 57.1
Nitab4.5_0003575g0030 Nicotiana tabacum HOM05D001053 ORTHO05D008021 8.8e-18 94.0 124 43.5
MBI03_g20845_MAGBIO Magnolia biondii HOM05D001053 ORTHO05D008021 1.2e-17 93.6 125 44.8
PGSC0003DMG401005535 Solanum tuberosum HOM05D001053 ORTHO05D008021 2.0e-17 92.8 111 45.0
arahy.Tifrunner.gnm1.ann1.JNKP0R Arachis hypogaea HOM05D001053 ORTHO05D008021 2.6e-17 92.4 73 63.0
arahy.Tifrunner.gnm1.ann1.YLDT1P Arachis hypogaea HOM05D001053 ORTHO05D008021 2.6e-17 92.4 73 63.0
Ah.02g121650 Amaranthus hybridus HOM05D001053 ORTHO05D008021 3.4e-17 92.0 119 43.7
AL7G18080 Arabidopsis lyrata HOM05D001053 ORTHO05D008021 5.7e-17 91.3 87 52.9
Cc07_g18770 Coffea canephora HOM05D001053 ORTHO05D008021 5.7e-17 91.3 123 47.2
AT4G33470 Arabidopsis thaliana HOM05D001053 ORTHO05D008021 9.8e-17 90.5 87 54.0
Phvul.002G273200 Phaseolus vulgaris HOM05D001053 ORTHO05D008021 9.8e-17 90.5 105 52.4
EL10Ac6g15291 Beta vulgaris HOM05D001053 ORTHO05D008021 1.3e-16 90.1 62 69.4
BcaC09g52163 Brassica carinata HOM05D001053 ORTHO05D008021 2.2e-16 89.4 96 50.0
Glyma.05G192600 Glycine max HOM05D001053 ORTHO05D008021 2.2e-16 89.4 117 47.9
VMungo0251G0496 Vigna mungo HOM05D001053 ORTHO05D008021 2.2e-16 89.4 110 48.2
Aa31sc146G20 Aethionema arabicum HOM05D001053 ORTHO05D008021 2.8e-16 89.0 71 59.2
Solyc01g009120.3 Solanum lycopersicum HOM05D001053 ORTHO05D008021 2.8e-16 89.0 110 44.5
Sopen01g004600 Solanum pennellii HOM05D001053 ORTHO05D008021 2.8e-16 89.0 110 44.5
ClCG01G015340 Citrullus lanatus HOM05D001053 ORTHO05D008021 6.3e-16 87.8 116 43.1
Potri.005G064200 Populus trichocarpa HOM05D001053 ORTHO05D008021 1.1e-15 87.0 72 59.7
CARHR241550 Cardamine hirsuta HOM05D001053 ORTHO05D008021 1.8e-15 86.3 72 58.3
Actinidia06612 Actinidia chinensis HOM05D001053 ORTHO05D008021 2.4e-15 85.9 43 93.0
Carub.0007s0700 Capsella rubella HOM05D001053 ORTHO05D008021 5.4e-15 84.7 67 59.7
AUR62003584 Chenopodium quinoa HOM05D001053 ORTHO05D008021 5.4e-15 84.7 63 66.7
Thhalv10025266m.g Eutrema salsugineum HOM05D001053 ORTHO05D008021 5.4e-15 84.7 72 56.9
Lsat_1_v5_gn_2_37440 Lactuca sativa HOM05D001053 ORTHO05D008021 5.4e-15 84.7 123 46.3
Lj4g0011583 Lotus japonicus HOM05D001053 ORTHO05D008021 5.4e-15 84.7 59 67.8
PSO170G2800 Papaver somniferum HOM05D001053 ORTHO05D008021 5.4e-15 84.7 74 55.4
ECA240G4797 Erigeron canadensis HOM05D003483 ORTHO05D008021 9.1e-15 84.0 94 51.1
Lalb_Chr16g0392561 Lupinus albus HOM05D001053 ORTHO05D008021 1.2e-14 83.6 116 42.2
Sp7g31180 Schrenkiella parvula HOM05D001053 ORTHO05D008021 1.2e-14 83.6 73 58.9
DCAR_001205 Daucus carota HOM05D001053 ORTHO05D008021 1.6e-14 83.2 62 64.5
BraA01t00463Z Brassica rapa HOM05D001053 ORTHO05D008021 2.0e-14 82.8 106 43.4
Peaxi162Scf00119g00944 Petunia axillaris HOM05D001053 ORTHO05D008021 3.5e-14 82.0 110 40.9
A01p04800 Brassica napus HOM05D001053 ORTHO05D008021 4.5e-14 81.6 66 59.1
Os12g0182700 Oryza sativa ssp. japonica HOM05D001053 ORTHO05D008021 4.5e-14 81.6 116 40.5
Sabra05G0053500 Salix brachista HOM05D001053 ORTHO05D008021 1.0e-13 80.5 72 58.3
C01p05210 Brassica napus HOM05D001053 ORTHO05D008021 1.3e-13 80.1 67 56.7
BolC1t00500H Brassica oleracea HOM05D006516 ORTHO05D008021 1.3e-13 80.1 67 56.7
Eucgr.J01293 Eucalyptus grandis HOM05D001053 ORTHO05D008021 1.3e-13 80.1 72 58.3
CAN.G102.6 Capsicum annuum HOM05D001053 ORTHO05D008021 2.9e-13 79.0 122 38.5
CANSAT56G3272 Cannabis sativa HOM05D001053 ORTHO05D008021 3.8e-13 78.6 83 48.2
TPR.G37345 Trifolium pratense HOM05D001053 ORTHO05D008021 8.5e-13 77.4 51 70.6
Aqoxy5G02258 Aquilegia oxysepala HOM05D001053 ORTHO05D008021 1.5e-12 76.6 68 54.4
MELO3C008064.2 Cucumis melo HOM05D001053 ORTHO05D008021 1.5e-12 76.6 78 52.6
CsaV3_6G041560 Cucumis sativus L. HOM05D001053 ORTHO05D008021 1.9e-12 76.3 78 51.3
Sed0008132 Sechium edule HOM05D001053 ORTHO05D008021 3.2e-12 75.5 120 43.3
Lj1g0009434 Lotus japonicus HOM05D001053 ORTHO05D008021 5.5e-12 74.7 72 51.4
Migut.H00692 Erythranthe guttata HOM05D001053 ORTHO05D008021 9.4e-12 73.9 68 51.5
HanXRQChr14g0433381 Helianthus annuus HOM05D001053 ORTHO05D008021 9.4e-12 73.9 67 59.7
unitig_899.g14678 Utricularia gibba HOM05D001053 ORTHO05D008021 1.8e-10 69.7 114 38.6
Zm00001eb148900 Zea mays HOM05D001053 ORTHO05D008021 4.0e-10 68.6 47 61.7
PSO384G1460 Papaver somniferum HOM05D001325 ORTHO05D001540 4.4e-09 65.1 97 35.1
Pp3c21_17500 Physcomitrium patens HOM05D001053 ORTHO05D008021 4.4e-09 65.1 81 40.7
PSO357G0201 Papaver somniferum HOM05D001325 ORTHO05D001540 7.5e-09 64.3 65 52.3
PSO170G5129 Papaver somniferum HOM05D001325 ORTHO05D001540 2.2e-08 62.8 65 49.2
CBR_g34011 Chara braunii HOM05D001053 ORTHO05D008021 6.3e-08 61.2 46 56.5
SEGI_25913 Sequoiadendron giganteum HOM05D001053 ORTHO05D008021 8.3e-08 60.8 77 45.5
SMO241G0005 Selaginella moellendorffii HOM05D003473 ORTHO05D003872 1.4e-07 60.1 41 61.0
SMO232G0082 Selaginella moellendorffii HOM05D001053 ORTHO05D008021 4.1e-07 58.5 41 58.5
FAN26G1915 Fragaria x ananassa HOM05D001053 ORTHO05D008021 5.4e-07 58.2 30 83.3
SMO232G0037 Selaginella moellendorffii HOM05D003473 ORTHO05D003872 5.4e-07 58.2 42 57.1
Oeu058292.1 Olea europaea HOM05D001053 ORTHO05D008021 2.0e-06 56.2 30 86.7
PSO063G1915 Papaver somniferum HOM05D001053 ORTHO05D008021 2.0e-06 56.2 30 80.0
AagrBONN_evm.TU.Sc2ySwM_368.1571 Anthoceros agrestis HOM05D001053 ORTHO05D008021 2.7e-06 55.8 76 36.8


User provided reference genes

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