Gene: Sopen01g004600

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen01g004600
  • Transcript Identifier Sopen01g004600.1
  • Gene Type Coding gene
  • Location Spenn-ch01 : 3473835-3492106 : negative

Gene Family Information

  • ID HOM05D001053
  • #Genes/#Species 576/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen01g004600.1

Descriptions

  • Description Encodes HDA14, a member of the histone deacetylase family proteins. | histone deacetylase 14 (hda14) | FUNCTIONS IN: histone deacetylase activity | INVOLVED IN: histone deacetylation | LOCATED IN: chloroplast | EXPRESSED IN: 20 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Histone deacetylase superfamily | BEST Arabidopsis thaliana protein match is: histone deacetylase 5
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030186
ISO
PLAZA Integrative Orthologymelatonin metabolic process AT4G33470
GO:0090042
ISO
PLAZA Integrative Orthologytubulin deacetylation AT4G33470
GO:0006476
ISO
PLAZA Integrative Orthologyprotein deacetylation AT4G33470
GO:0042548
ISO
PLAZA Integrative Orthologyregulation of photosynthesis, light reaction AT4G33470

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT4G33470
GO:0051721
ISO
PLAZA Integrative Orthologyprotein phosphatase 2A binding AT4G33470
GO:0033558
ISO
PLAZA Integrative Orthologyprotein deacetylase activity AT4G33470
GO:0019213
ISO
PLAZA Integrative Orthologydeacetylase activity AT4G33470
GO:0048487
ISO
PLAZA Integrative Orthologybeta-tubulin binding AT4G33470
GO:0043621
ISO
PLAZA Integrative Orthologyprotein self-association AT4G33470
GO:0043014
ISO
PLAZA Integrative Orthologyalpha-tubulin binding AT4G33470
GO:0042903
ISO
PLAZA Integrative Orthologytubulin deacetylase activity AT4G33470

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT4G33470
GO:0005739
ISO
PLAZA Integrative Orthologymitochondrion AT4G33470
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT4G33470
GO:0009570
ISO
PLAZA Integrative Orthologychloroplast stroma AT4G33470
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT4G33470
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT4G33470

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR037138 Histone deacetylase domain superfamily
IPR023801 Histone deacetylase domain
IPR023696 Ureohydrolase domain superfamily
IPR000286 Histone deacetylase family
Mapman id Description
12.3.2.1.2 Chromatin organisation.post-translational histone modification.histone deacetylation.HD1 histone deacetylase family.class-II histone deacetylase