Gene: AT4G33470
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT4G33470
- Transcript Identifier AT4G33470.1
- Gene Type Coding gene
- Location Chr4 : 16102774-16105439 : negative
Gene Family Information
- ID HOM05D001053
- #Genes/#Species 576/99
- Phylogenetic origin
- ID ORTHO05D008021
- #Genes/#Species 124/95
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT4G33470.1
- symbol HDA14
- Alias ATHDA14
- uniprot Q941D6
Descriptions
- Description histone deacetylase 14
- Computational description histone deacetylase 14 (hda14); FUNCTIONS IN: histone deacetylase activity; INVOLVED IN: histone deacetylation; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 5 (TAIR:AT5G61060.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0042548 | IMP | Gene Ontology | regulation of photosynthesis, light reaction | 1 |
GO:0030186 | IEA | GOA Database | melatonin metabolic process | |
GO:0030186 | IDA | Gene Ontology | melatonin metabolic process | 2 |
GO:0070932 | IEA | GOA Database | histone H3 deacetylation | |
GO:0016575 | IEA | GOA Database | histone deacetylation | |
GO:0006325 | IEA | GOA Database | chromatin organization | |
GO:0006476 | IDA | Gene Ontology | protein deacetylation | 1 |
GO:0090042 | IDA | Gene Ontology | tubulin deacetylation | 3 |
Molecular Function
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0033558 | IDA | Gene Ontology | protein deacetylase activity | 1 |
GO:0019213 | IEA | GOA Database | deacetylase activity | |
GO:0019213 | IDA | Gene Ontology | deacetylase activity | 2 |
GO:0008270 | ISS | Gene Ontology | zinc ion binding | 4 |
GO:0004407 | IEA | GOA Database | histone deacetylase activity | |
GO:0004407 | ISS | Gene Ontology | histone deacetylase activity | 5 |
GO:0016787 | IEA | GOA Database | hydrolase activity | |
GO:0051721 | IDA | Gene Ontology | protein phosphatase 2A binding | 3 |
GO:0048487 | IDA | Gene Ontology | beta-tubulin binding | 3 |
GO:0043621 | IPI | Gene Ontology | protein self-association | 3 |
GO:0043014 | IDA | Gene Ontology | alpha-tubulin binding | 3 |
GO:0042903 | IDA | Gene Ontology | tubulin deacetylase activity | 3 |
GO:0005515 | IPI | Gene Ontology | protein binding | 3 |
GO:0032041 | IEA | Gene Ontology | NAD-dependent histone deacetylase activity (H3-K14 specific) |
Cellular Component
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0005634 | IEA | GOA Database | nucleus | |
GO:0005634 | IDA ISM | Gene Ontology | nucleus | 3 |
GO:0009570 | IDA | Gene Ontology | chloroplast stroma | 1 |
GO:0009507 | IDA IEA | GOA Database | chloroplast | |
GO:0009507 | HDA | Gene Ontology | chloroplast | 6 |
GO:0005739 | IEA | GOA Database | mitochondrion | |
GO:0005739 | IDA | Gene Ontology | mitochondrion | 1 |
GO:0005829 | IDA | Gene Ontology | cytosol | 3 |
GO:0005737 | IDA | Gene Ontology | cytoplasm | 7 |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
Mapman id | Description |
---|---|
12.3.2.1.2 | Chromatin organisation.post-translational histone modification.histone deacetylation.HD1 histone deacetylase family.class-II histone deacetylase |