Gene: SEGI_25913

General Information

Structural Information

  • Species Sequoiadendron giganteum
  • Gene Identifier SEGI_25913
  • Transcript Identifier SEGI_25913.1
  • Gene Type Coding gene
  • Location chr3 : 509367673-509704041 : positive

Gene Family Information

  • ID HOM05D001053
  • #Genes/#Species 576/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid SEGI_25913.1

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:2000306
ISO
PLAZA Integrative Orthologypositive regulation of photomorphogenesis AT3G18520
GO:0009789
ISO
PLAZA Integrative Orthologypositive regulation of abscisic acid-activated signaling pathway AT3G18520
GO:0090042
ISO
PLAZA Integrative Orthologytubulin deacetylation AT4G33470
GO:0006476
ISO
PLAZA Integrative Orthologyprotein deacetylation AT4G33470
GO:0009640
ISO
PLAZA Integrative Orthologyphotomorphogenesis AT3G18520
GO:0042548
ISO
PLAZA Integrative Orthologyregulation of photosynthesis, light reaction AT3G18520
GO:0016575
ISO
PLAZA Integrative Orthologyhistone deacetylation AT3G18520
GO:0030186
ISO
PLAZA Integrative Orthologymelatonin metabolic process AT4G33470
GO:0051289
ISO
PLAZA Integrative Orthologyprotein homotetramerization AT3G18520
GO:0009408
ISO
PLAZA Integrative Orthologyresponse to heat AT3G18520
GO:0009294
ISO
PLAZA Integrative OrthologyDNA mediated transformation AT3G18520

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008270
ISO
PLAZA Integrative Orthologyzinc ion binding AT3G18520
GO:0019213
ISO
PLAZA Integrative Orthologydeacetylase activity AT4G33470
GO:0004407
ISO
PLAZA Integrative Orthologyhistone deacetylase activity AT3G18520
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT3G18520
GO:0043014
ISO
PLAZA Integrative Orthologyalpha-tubulin binding AT4G33470
GO:0042903
ISO
PLAZA Integrative Orthologytubulin deacetylase activity AT4G33470
GO:0051721
ISO
PLAZA Integrative Orthologyprotein phosphatase 2A binding AT4G33470
GO:0033558
ISO
PLAZA Integrative Orthologyprotein deacetylase activity AT4G33470
GO:0048487
ISO
PLAZA Integrative Orthologybeta-tubulin binding AT4G33470
GO:0043621
ISO
PLAZA Integrative Orthologyprotein self-association AT4G33470

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005739
ISO
PLAZA Integrative Orthologymitochondrion AT4G33470
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT3G18520
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT3G18520
GO:0009570
ISO
PLAZA Integrative Orthologychloroplast stroma AT4G33470
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT4G33470
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT4G33470
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT3G18520

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000286 Histone deacetylase family
IPR023801 Histone deacetylase domain
IPR037138 Histone deacetylase domain superfamily
IPR023696 Ureohydrolase domain superfamily
Mapman id Description
12.3.2.1.2 Chromatin organisation.post-translational histone modification.histone deacetylation.HD1 histone deacetylase family.class-II histone deacetylase