Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038791 Camellia sinensis var. sinensis HOM05D006776 ORTHO05D007603 8.7e-265 916.4 454 100.0
Actinidia08248 Actinidia chinensis HOM05D006776 ORTHO05D007603 4.4e-240 834.3 459 89.1
Dinv39223 Davidia involucrata HOM05D006776 ORTHO05D007603 5.7e-232 807.4 459 85.4
Rhsim07G0219900 Rhododendron simsii HOM05D006776 ORTHO05D007603 1.3e-228 796.2 459 84.7
Atru.chr13.832 Acer truncatum HOM05D006776 ORTHO05D007603 2.6e-216 755.4 438 81.7
GSVIVG01009344001 Vitis vinifera HOM05D006776 ORTHO05D007603 2.6e-216 755.4 459 80.2
RcHm_v2.0_Chr6g0309581 Rosa chinensis HOM05D006776 ORTHO05D007603 5.9e-213 744.2 454 78.4
CiPaw.07G175000 Carya illinoinensis HOM05D006776 ORTHO05D007603 7.8e-213 743.8 454 80.0
Cc10_g05780 Coffea canephora HOM05D006776 ORTHO05D007603 1.0e-212 743.4 458 78.6
FvH4_2g33100 Fragaria vesca HOM05D006776 ORTHO05D007603 1.0e-212 743.4 454 78.0
MD15G1070100 Malus domestica HOM05D006776 ORTHO05D007603 1.0e-212 743.4 454 77.8
TAR376G1186 Trochodendron aralioides HOM05D006776 ORTHO05D007603 6.6e-212 740.7 459 79.3
Hma1.2p1_0819F.1_g223710 Hydrangea macrophylla HOM05D006776 ORTHO05D007603 1.1e-211 740.0 439 80.9
FAN24G3456 Fragaria x ananassa HOM05D006776 ORTHO05D007603 1.5e-211 739.6 454 77.3
Thecc.08G088800 Theobroma cacao HOM05D006776 ORTHO05D007603 1.5e-211 739.6 454 79.1
FAN20G0940 Fragaria x ananassa HOM05D006776 ORTHO05D007603 7.3e-211 737.3 454 77.1
FAN27G1522 Fragaria x ananassa HOM05D006776 ORTHO05D007603 9.5e-211 736.9 454 77.3
Prupe.1G422900 Prunus persica HOM05D006776 ORTHO05D007603 1.2e-210 736.5 454 78.9
FAN15G0723 Fragaria x ananassa HOM05D006776 ORTHO05D007603 4.7e-210 734.6 454 77.1
Manes.05G181900 Manihot esculenta HOM05D006776 ORTHO05D007603 1.5e-208 729.6 456 77.4
COL.COLO4_28506 Corchorus olitorius HOM05D006776 ORTHO05D007603 4.4e-208 728.0 454 77.5
Ciclev10001152m.g Citrus clementina HOM05D006776 ORTHO05D007603 9.8e-208 726.9 454 77.8
Gohir.D05G213300 Gossypium hirsutum HOM05D006776 ORTHO05D007603 2.2e-207 725.7 454 77.3
Gohir.A05G210000 Gossypium hirsutum HOM05D006776 ORTHO05D007603 1.4e-206 723.0 454 76.7
MSTRG.22221 Avicennia marina HOM05D006776 ORTHO05D007603 4.1e-206 721.5 458 75.5
PGSC0003DMG400011544 Solanum tuberosum HOM05D006776 ORTHO05D007603 1.6e-205 719.5 457 76.1
Nitab4.5_0002314g0100 Nicotiana tabacum HOM05D006776 ORTHO05D007603 2.7e-205 718.8 457 77.0
Lj4A758G74 Lonicera japonica HOM05D006776 ORTHO05D007603 3.5e-205 718.4 418 84.0
QL12p038088 Quercus lobata HOM05D006776 ORTHO05D007603 1.0e-204 716.8 489 72.2
Cfa013778 Carpinus fangiana HOM05D006776 ORTHO05D007603 2.5e-203 712.2 454 77.5
Cpa.g.sc142.25 Carica papaya HOM05D006776 ORTHO05D007603 7.3e-203 710.7 439 76.8
Oeu053611.1 Olea europaea HOM05D006776 ORTHO05D007603 7.3e-203 710.7 458 75.3
Nitab4.5_0008551g0030 Nicotiana tabacum HOM05D006776 ORTHO05D007603 2.1e-202 709.1 439 78.4
Solyc12g088340.2 Solanum lycopersicum HOM05D006776 ORTHO05D007603 2.1e-202 709.1 457 75.5
Lsat_1_v5_gn_4_131640 Lactuca sativa HOM05D006776 ORTHO05D007603 6.2e-202 707.6 460 75.2
Sopen12g030330 Solanum pennellii HOM05D006776 ORTHO05D007603 6.2e-202 707.6 457 75.3
EL10Ac1g02384 Beta vulgaris HOM05D006776 ORTHO05D007603 2.3e-201 705.7 460 74.1
Migut.N02781 Erythranthe guttata HOM05D006776 ORTHO05D007603 3.1e-201 705.3 459 76.0
Potri.014G016100 Populus trichocarpa HOM05D006776 ORTHO05D007603 4.0e-201 704.9 457 75.3
CANSAT21G2159 Cannabis sativa HOM05D006776 ORTHO05D007603 6.8e-201 704.1 454 75.3
CsaV3_2G026140 Cucumis sativus L. HOM05D006776 ORTHO05D007603 4.4e-200 701.4 454 75.3
ECA232G1156 Erigeron canadensis HOM05D006776 ORTHO05D007603 9.9e-200 700.3 458 73.8
PGR083G0271 Punica granatum HOM05D006776 ORTHO05D007603 2.2e-199 699.1 454 75.8
arahy.Tifrunner.gnm1.ann1.YEFH3D Arachis hypogaea HOM05D006776 ORTHO05D007603 4.9e-199 698.0 453 73.3
SGA_v2.0_scaffold152G36804 Striga asiatica HOM05D006776 ORTHO05D007603 1.4e-198 696.4 516 67.2
arahy.Tifrunner.gnm1.ann1.SBJ000 Arachis hypogaea HOM05D006776 ORTHO05D007603 7.1e-198 694.1 450 73.1
Nn1g04555 Nelumbo nucifera HOM05D006776 ORTHO05D007603 9.2e-198 693.7 458 72.7
HanXRQChr09g0266761 Helianthus annuus HOM05D006776 ORTHO05D007603 1.0e-196 690.3 460 73.3
Hund23872 Selenicereus undatus HOM05D006776 ORTHO05D007603 1.0e-196 690.3 459 73.6
MELO3C010806.2 Cucumis melo HOM05D006776 ORTHO05D007603 1.3e-196 689.9 460 73.7
Sed0026542 Sechium edule HOM05D006776 ORTHO05D007603 1.5e-195 686.4 438 75.1
Eucgr.F00083 Eucalyptus grandis HOM05D006776 ORTHO05D007603 2.5e-195 685.6 454 74.9
ClCG08G016470 Citrullus lanatus HOM05D006776 ORTHO05D007603 5.6e-195 684.5 442 74.4
PSO017G0681 Papaver somniferum HOM05D006776 ORTHO05D007603 5.6e-195 684.5 456 72.1
PSO170G0170 Papaver somniferum HOM05D006776 ORTHO05D007603 1.2e-194 683.3 456 71.9
Ah.11g042830 Amaranthus hybridus HOM05D006776 ORTHO05D007603 1.4e-193 679.9 459 72.1
Aqoxy5G00870 Aquilegia oxysepala HOM05D006776 ORTHO05D007603 1.8e-193 679.5 459 72.5
Glyma.04G045700 Glycine max HOM05D006776 ORTHO05D007603 3.1e-193 678.7 458 72.5
Sabra14G0010000 Salix brachista HOM05D006776 ORTHO05D007603 2.6e-192 675.6 457 72.9
Gorai.009G219900 Gossypium raimondii HOM05D006776 ORTHO05D007603 3.4e-192 675.2 415 78.8
Lalb_Chr11g0062871 Lupinus albus HOM05D006776 ORTHO05D007603 7.6e-192 674.1 453 72.0
DCAR_012816 Daucus carota HOM05D006776 ORTHO05D007603 1.7e-191 672.9 455 71.9
Lj1g0026753 Lotus japonicus HOM05D006776 ORTHO05D007603 2.2e-191 672.5 454 71.4
Medtr3g103170 Medicago truncatula HOM05D006776 ORTHO05D007603 4.9e-191 671.4 453 71.3
Haze_22436 Corylus avellana HOM05D006776 ORTHO05D007603 1.9e-190 669.5 405 81.2
Glyma.06G046400 Glycine max HOM05D006776 ORTHO05D007603 1.9e-190 669.5 454 71.6
TPR.G33723 Trifolium pratense HOM05D006776 ORTHO05D007603 9.2e-190 667.2 453 71.3
TWI56G0429 Tripterygium wilfordii HOM05D006776 ORTHO05D007603 9.2e-190 667.2 454 72.0
VMungo1309G0963 Vigna mungo HOM05D006776 ORTHO05D007603 1.2e-189 666.8 454 71.1
Hma1.2p1_0819F.1_g223700 Hydrangea macrophylla HOM05D006776 ORTHO05D007603 2.5e-187 659.1 385 83.1
THA.LOC104814190 Tarenaya hassleriana HOM05D006776 ORTHO05D007603 4.3e-187 658.3 456 71.5
Peaxi162Scf00160g00527 Petunia axillaris HOM05D006776 ORTHO05D007603 5.6e-187 657.9 438 75.6
Ca_15900_v3 Cicer arietinum L. HOM05D006776 ORTHO05D007603 7.3e-187 657.5 452 70.1
Phvul.009G071700 Phaseolus vulgaris HOM05D006776 ORTHO05D007603 7.3e-187 657.5 456 69.7
Sc15g0005690 Simmondsia chinensis HOM05D006776 ORTHO05D007603 9.0e-185 650.6 411 76.9
Psat5g038960 Pisum sativum HOM05D006776 ORTHO05D007603 3.4e-184 648.7 453 69.1
AT1G27840 Arabidopsis thaliana HOM05D006776 ORTHO05D007603 1.9e-179 632.9 455 69.5
AL1G41330 Arabidopsis lyrata HOM05D006776 ORTHO05D007603 5.6e-179 631.3 456 69.1
Duzib116G0586 Durio zibethinus HOM05D006776 ORTHO05D007603 1.6e-178 629.8 385 80.8
HPP92_001976 Vanilla planifolia HOM05D006776 ORTHO05D007603 2.4e-177 625.9 455 65.9
ATR0820G216 Amborella trichopoda HOM05D006776 ORTHO05D007603 6.9e-177 624.4 458 65.7
CARHR027300 Cardamine hirsuta HOM05D006776 ORTHO05D007603 2.6e-176 622.5 455 68.4
unitig_578.g16149 Utricularia gibba HOM05D006776 ORTHO05D007603 2.6e-176 622.5 459 66.4
BcaNung06155 Brassica carinata HOM05D006776 ORTHO05D007603 7.6e-176 620.9 457 68.1
Sp1g24040 Schrenkiella parvula HOM05D006776 ORTHO05D007603 2.2e-175 619.4 459 68.0
A09p38320 Brassica napus HOM05D006776 ORTHO05D007603 2.9e-175 619.0 456 67.1
BraA09t39342Z Brassica rapa HOM05D006776 ORTHO05D007603 1.4e-174 616.7 457 67.4
Aa31sc113G60 Aethionema arabicum HOM05D006776 ORTHO05D007603 4.2e-174 615.1 490 65.3
CDE04G2973 Ceratophyllum demersum HOM05D006776 ORTHO05D007603 4.2e-174 615.1 459 66.4
BolC5t31368H Brassica oleracea HOM05D006776 ORTHO05D007603 2.1e-173 612.8 456 66.7
C05p26470 Brassica napus HOM05D006776 ORTHO05D007603 4.6e-173 611.7 456 66.4
vmacro22055 Vaccinium macrocarpon HOM05D006776 ORTHO05D007603 1.0e-172 610.5 372 80.6
Thhalv10007615m.g Eutrema salsugineum HOM05D006776 ORTHO05D007603 5.8e-168 594.7 455 66.4
AUR62038776 Chenopodium quinoa HOM05D006776 ORTHO05D007603 1.0e-164 583.9 410 70.2
BcaNung06153 Brassica carinata HOM05D006776 ORTHO05D007603 1.5e-163 580.1 456 64.3
Zm00001eb147340 Zea mays HOM05D006776 ORTHO05D007603 2.8e-162 575.9 460 62.8
MD08G1082700 Malus domestica HOM05D006776 ORTHO05D007603 1.8e-140 503.4 373 68.1
Mapoly0043s0035 Marchantia polymorpha HOM05D006776 ORTHO05D007603 9.7e-131 471.1 468 50.4
Pp3c22_5850 Physcomitrium patens HOM05D006776 ORTHO05D007603 9.1e-129 464.5 464 49.8
BcaC05g26777 Brassica carinata HOM05D006776 ORTHO05D007603 2.9e-127 459.5 461 55.7
AagrBONN_evm.TU.Sc2ySwM_228.2971 Anthoceros agrestis HOM05D006776 ORTHO05D007603 1.4e-124 450.7 457 49.7
AT1G19750 Arabidopsis thaliana HOM05D006776 ORTHO05D007603 8.2e-122 441.4 338 66.3
AUR62037473 Chenopodium quinoa HOM05D006776 ORTHO05D007603 1.8e-121 440.3 302 71.2
SMO203G0215 Selaginella moellendorffii HOM05D006776 ORTHO05D007603 5.9e-120 435.3 458 47.6
Carub.0001s2630 Capsella rubella HOM05D006776 ORTHO05D007603 1.2e-109 401.0 313 65.5
CDE02G3909 Ceratophyllum demersum HOM05D006776 ORTHO05D007603 4.7e-101 372.5 401 49.6
CBR_g4873 Chara braunii HOM05D006776 ORTHO05D007603 1.8e-100 370.5 514 42.0
SMO353G0131 Selaginella moellendorffii HOM05D006776 ORTHO05D007603 2.4e-89 333.6 471 40.1
MD08G1084000 Malus domestica HOM05D006776 ORTHO05D007603 2.4e-81 307.0 246 68.3
SEGI_38356 Sequoiadendron giganteum HOM05D006776 ORTHO05D007603 3.0e-79 300.1 207 66.2
SEGI_36074 Sequoiadendron giganteum HOM05D006776 ORTHO05D007603 1.6e-69 267.7 225 59.6
Os02g0307200 Oryza sativa ssp. japonica HOM05D006776 ORTHO05D007603 4.2e-65 253.1 191 63.9
MCO02G266 Micromonas commoda HOM05D006776 ORTHO05D007603 5.4e-65 252.7 443 35.9
Lsat_1_v5_gn_7_88960 Lactuca sativa HOM05D006776 ORTHO05D007603 1.9e-41 174.5 107 73.8
Cre01.g032100 Chlamydomonas reinhardtii HOM05D006776 ORTHO05D007603 1.6e-40 171.4 305 35.1
PRCOL_00002749 Prasinoderma coloniale HOM05D006776 ORTHO05D007603 4.1e-36 156.8 463 28.3
Cre01.g032139 Chlamydomonas reinhardtii HOM05D006776 ORTHO05D007603 2.0e-19 101.3 124 37.1
SMO361G0390 Selaginella moellendorffii HOM05D002303 ORTHO05D006504 4.7e-08 63.5 196 25.0
Cc04_g10820 Coffea canephora HOM05D000464 ORTHO05D006292 2.3e-07 61.2 150 26.7
Ah.11g047550 Amaranthus hybridus HOM05D006809 ORTHO05D008609 8.8e-07 59.3 209 24.9
Lj3A1052T30 Lonicera japonica HOM05D002303 ORTHO05D006504 1.2e-06 58.9 194 23.7
DCAR_007090 Daucus carota HOM05D002303 ORTHO05D006504 2.0e-06 58.2 194 23.7
DCAR_013994 Daucus carota HOM05D000347 ORTHO05D001997 2.6e-06 57.8 171 23.4
FvH4_7g34000 Fragaria vesca HOM05D004758 ORTHO05D006063 2.6e-06 57.8 163 25.2
Potri.008G172800 Populus trichocarpa HOM05D002303 ORTHO05D006504 3.4e-06 57.4 194 23.7
THA.LOC104820400 Tarenaya hassleriana HOM05D003769 ORTHO05D004521 3.4e-06 57.4 242 23.6
Glyma.11G091500 Glycine max HOM05D000347 ORTHO05D001997 4.4e-06 57.0 168 25.6
Cc00_g31710 Coffea canephora HOM05D002303 ORTHO05D006504 5.7e-06 56.6 194 23.2
Cc01_g07870 Coffea canephora HOM05D002303 ORTHO05D006504 5.7e-06 56.6 194 23.2
MD13G1091700 Malus domestica HOM05D002303 ORTHO05D006504 5.7e-06 56.6 194 23.2
MD16G1092300 Malus domestica HOM05D002303 ORTHO05D006504 5.7e-06 56.6 194 23.2
Prupe.1G254100 Prunus persica HOM05D002303 ORTHO05D006504 5.7e-06 56.6 194 23.2
Aa31LG10G4900 Aethionema arabicum HOM05D003769 ORTHO05D004521 7.5e-06 56.2 233 25.8
FAN10G3249 Fragaria x ananassa HOM05D004758 ORTHO05D006063 7.5e-06 56.2 163 25.2
SEGI_17343 Sequoiadendron giganteum HOM05D002303 ORTHO05D006504 7.5e-06 56.2 194 22.2
BcaB07g33695 Brassica carinata HOM05D003769 ORTHO05D004521 9.7e-06 55.8 214 25.2
Lsat_1_v5_gn_5_189761 Lactuca sativa HOM05D005544 ORTHO05D007303 9.7e-06 55.8 157 24.8
Sed0021649 Sechium edule HOM05D005508 ORTHO05D006882 9.7e-06 55.8 206 25.2


User provided reference genes

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