Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038290 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 3.8e-43 177.9 102 100.0
CSS0018491 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 2.1e-41 172.2 103 94.2
CSS0027843 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 1.2e-33 146.4 89 93.3
Actinidia03796 Actinidia chinensis HOM05D007201 ORTHO05D009122 3.3e-18 95.1 88 67.0
Dinv26498 Davidia involucrata HOM05D007201 ORTHO05D009122 1.6e-17 92.8 88 65.9
Solyc12g009390.2 Solanum lycopersicum HOM05D007201 ORTHO05D009122 2.1e-17 92.4 88 65.9
CSS0012149 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 4.7e-17 91.3 102 50.0
CSS0032596 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 4.7e-17 91.3 102 50.0
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 6.1e-17 90.9 88 67.0
PGSC0003DMG400002893 Solanum tuberosum HOM05D007201 ORTHO05D009122 6.1e-17 90.9 88 64.8
Rhsim03G0269700 Rhododendron simsii HOM05D007201 ORTHO05D009122 8.0e-17 90.5 88 65.9
SGA_v2.0_scaffold21G09583 Striga asiatica HOM05D007201 ORTHO05D009122 2.0e-15 85.9 88 60.2
COL.COLO4_09000 Corchorus olitorius HOM05D007201 ORTHO05D009122 4.4e-15 84.7 88 61.4
Lju50A20G7 Lonicera japonica HOM05D007201 ORTHO05D009122 9.8e-15 83.6 88 67.0
Manes.02G222200 Manihot esculenta HOM05D007201 ORTHO05D009122 1.7e-14 82.8 89 50.6
Prupe.1G000600 Prunus persica HOM05D007201 ORTHO05D009122 3.7e-14 81.6 88 62.5
vmacro22702 Vaccinium macrocarpon HOM05D007201 ORTHO05D009122 4.9e-14 81.3 49 73.5
Gorai.012G009900 Gossypium raimondii HOM05D007201 ORTHO05D009122 8.3e-14 80.5 88 59.1
Thecc.09G202300 Theobroma cacao HOM05D007201 ORTHO05D009122 8.3e-14 80.5 85 60.0
HanXRQChr10g0309261 Helianthus annuus HOM05D007201 ORTHO05D009122 1.1e-13 80.1 47 70.2
Duzib168G1263 Durio zibethinus HOM05D007201 ORTHO05D009122 1.4e-13 79.7 85 60.0
unitig_8.g3542 Utricularia gibba HOM05D007201 ORTHO05D009122 2.4e-13 79.0 49 71.4
Cc06_g23490 Coffea canephora HOM05D007201 ORTHO05D009122 7.0e-13 77.4 88 64.8
ECA234G1264 Erigeron canadensis HOM05D007201 ORTHO05D009122 1.2e-12 76.6 46 76.1
ECA240G0013 Erigeron canadensis HOM05D006383 ORTHO05D007815 1.2e-12 76.6 49 71.4
CANSAT25G2467 Cannabis sativa HOM05D007201 ORTHO05D009122 1.6e-12 76.3 94 43.6
Hund22525 Selenicereus undatus HOM05D007201 ORTHO05D009122 2.0e-12 75.9 49 65.3
Nn8g41282 Nelumbo nucifera HOM05D007201 ORTHO05D009122 2.7e-12 75.5 86 61.6
TAR626G0209 Trochodendron aralioides HOM05D007201 ORTHO05D009122 2.7e-12 75.5 46 71.7
CsaV3_1G044360 Cucumis sativus L. HOM05D007201 ORTHO05D009122 4.6e-12 74.7 85 43.5
MELO3C010035.2 Cucumis melo HOM05D007201 ORTHO05D009122 7.8e-12 73.9 85 44.7
Sc10g0006090 Simmondsia chinensis HOM05D007201 ORTHO05D009122 1.0e-11 73.6 90 56.7
Sopen12g004380 Solanum pennellii HOM05D007201 ORTHO05D009122 1.3e-11 73.2 76 65.8
AUR62027959 Chenopodium quinoa HOM05D007201 ORTHO05D009122 5.0e-11 71.2 49 61.2
Eucgr.C00055 Eucalyptus grandis HOM05D007201 ORTHO05D009122 5.0e-11 71.2 42 73.8
Gohir.D04G008200 Gossypium hirsutum HOM05D007201 ORTHO05D009122 8.6e-11 70.5 45 68.9
QL11p005700 Quercus lobata HOM05D007201 ORTHO05D009122 3.3e-10 68.6 89 44.9
PSO339G5324 Papaver somniferum HOM05D007201 ORTHO05D009122 4.3e-10 68.2 89 56.2
Glyma.11G109000 Glycine max HOM05D007201 ORTHO05D009122 5.6e-10 67.8 43 67.4
Glyma.12G016400 Glycine max HOM05D007201 ORTHO05D009122 5.6e-10 67.8 43 67.4
MD04G1000600 Malus domestica HOM05D007201 ORTHO05D009122 5.6e-10 67.8 89 61.8
HPP92_017373 Vanilla planifolia HOM05D007201 ORTHO05D009122 7.3e-10 67.4 49 65.3
arahy.Tifrunner.gnm1.ann1.X4HTYC Arachis hypogaea HOM05D007201 ORTHO05D009122 1.2e-09 66.6 43 67.4
THA.LOC104809224 Tarenaya hassleriana HOM05D007201 ORTHO05D009122 1.6e-09 66.2 47 66.0
arahy.Tifrunner.gnm1.ann1.G7GJBK Arachis hypogaea HOM05D007201 ORTHO05D009122 2.1e-09 65.9 42 61.9
Cpa.g.sc46.114 Carica papaya HOM05D007201 ORTHO05D009122 2.1e-09 65.9 44 70.5
GSVIVG01034266001 Vitis vinifera HOM05D007201 ORTHO05D009122 2.8e-09 65.5 77 66.2
CAN.G1591.3 Capsicum annuum HOM05D007201 ORTHO05D009122 3.6e-09 65.1 73 63.0
Cfa012872 Carpinus fangiana HOM05D007201 ORTHO05D009122 3.6e-09 65.1 95 49.5
RcHm_v2.0_Chr4g0384751 Rosa chinensis HOM05D007201 ORTHO05D009122 3.6e-09 65.1 50 62.0
FvH4_4g00131 Fragaria vesca HOM05D007201 ORTHO05D009122 6.2e-09 64.3 40 70.0
FAN22G0406 Fragaria x ananassa HOM05D007201 ORTHO05D009122 6.2e-09 64.3 40 70.0
Sabra06G0061200 Salix brachista HOM05D007201 ORTHO05D009122 6.2e-09 64.3 44 65.9
CiPaw.15G000100 Carya illinoinensis HOM05D007201 ORTHO05D009122 8.0e-09 63.9 95 55.8
Potri.006G081100 Populus trichocarpa HOM05D007201 ORTHO05D009122 8.0e-09 63.9 47 63.8
VMungo1127G0228 Vigna mungo HOM05D007201 ORTHO05D009122 8.0e-09 63.9 52 57.7
FAN12G0236 Fragaria x ananassa HOM05D007201 ORTHO05D009122 1.1e-08 63.5 40 70.0
FAN12G1512 Fragaria x ananassa HOM05D007201 ORTHO05D009122 1.1e-08 63.5 40 70.0
Psat7g169960 Pisum sativum HOM05D007201 ORTHO05D009122 2.3e-08 62.4 45 62.2
Atru.chr7.298 Acer truncatum HOM05D007201 ORTHO05D009122 3.1e-08 62.0 48 54.2
Sed0005629 Sechium edule HOM05D007201 ORTHO05D009122 3.1e-08 62.0 98 40.8
Phvul.011G018600 Phaseolus vulgaris HOM05D007201 ORTHO05D009122 5.2e-08 61.2 52 55.8
Sp5g30480 Schrenkiella parvula HOM05D007201 ORTHO05D009122 5.2e-08 61.2 43 67.4
Carub.0002s2218 Capsella rubella HOM05D007201 ORTHO05D009122 1.2e-07 60.1 43 65.1
TPR.G28027 Trifolium pratense HOM05D007201 ORTHO05D009122 1.2e-07 60.1 43 65.1
Nitab4.5_0000073g0490 Nicotiana tabacum HOM05D007201 ORTHO05D009122 1.5e-07 59.7 73 60.3
PGR142G4385 Punica granatum HOM05D007201 ORTHO05D009122 2.6e-07 58.9 42 59.5
AT1G75340 Arabidopsis thaliana HOM05D007201 ORTHO05D009122 3.4e-07 58.5 43 62.8
EL10Ac2g03602 Beta vulgaris HOM05D007201 ORTHO05D009122 3.4e-07 58.5 35 71.4
Haze_21242 Corylus avellana HOM05D007201 ORTHO05D009122 4.4e-07 58.2 89 49.4
Peaxi162Scf00047g02450 Petunia axillaris HOM05D007201 ORTHO05D009122 4.4e-07 58.2 85 45.9
AL2G35270 Arabidopsis lyrata HOM05D007201 ORTHO05D009122 5.8e-07 57.8 42 64.3
CARHR068690 Cardamine hirsuta HOM05D007201 ORTHO05D009122 5.8e-07 57.8 42 64.3
Thhalv10018711m.g Eutrema salsugineum HOM05D007201 ORTHO05D009122 7.5e-07 57.4 43 62.8
Lj3g0009807 Lotus japonicus HOM05D007201 ORTHO05D009122 7.5e-07 57.4 30 73.3
A07p40900 Brassica napus HOM05D007201 ORTHO05D009122 9.8e-07 57.0 42 61.9
BraA07t31630Z Brassica rapa HOM05D007201 ORTHO05D009122 9.8e-07 57.0 42 61.9
Lsat_1_v5_gn_5_80700 Lactuca sativa HOM05D007201 ORTHO05D009122 9.8e-07 57.0 47 55.3
SEGI_05170 Sequoiadendron giganteum HOM05D007201 ORTHO05D009122 1.3e-06 56.6 45 55.6
SHI24431 Sapria himalayana HOM05D007201 ORTHO05D009122 1.7e-06 56.2 41 61.0
BcaC08g47362 Brassica carinata HOM05D007201 ORTHO05D009122 3.7e-06 55.1 41 58.5
C06p49330 Brassica napus HOM05D007201 ORTHO05D009122 3.7e-06 55.1 41 58.5
BolC6t39968H Brassica oleracea HOM05D007201 ORTHO05D009122 3.7e-06 55.1 41 58.5
Mapoly0005s0044 Marchantia polymorpha HOM05D007201 ORTHO05D009122 6.4e-06 54.3 35 62.9


User provided reference genes

Program Settings