Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037293 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 3.9e-246 854.4 439 100.0
Dinv38097 Davidia involucrata HOM05D005526 ORTHO05D006802 1.6e-210 736.1 439 86.1
Actinidia08810 Actinidia chinensis HOM05D005526 ORTHO05D006802 4.6e-210 734.6 439 86.8
vmacro16915 Vaccinium macrocarpon HOM05D005526 ORTHO05D006802 3.0e-193 678.7 561 67.9
Rhsim12G0193000 Rhododendron simsii HOM05D005526 ORTHO05D006802 1.5e-192 676.4 541 70.1
TAR383G0281 Trochodendron aralioides HOM05D005526 ORTHO05D006802 4.0e-190 668.3 439 78.4
Cfa002011 Carpinus fangiana HOM05D005526 ORTHO05D006802 1.2e-186 656.8 438 77.9
Atru.chr1.3093 Acer truncatum HOM05D005526 ORTHO05D006802 2.5e-184 649.0 438 76.5
Duzib235G1092 Durio zibethinus HOM05D005526 ORTHO05D006802 1.1e-182 643.7 439 76.3
Ciclev10025661m.g Citrus clementina HOM05D005526 ORTHO05D006802 9.0e-182 640.6 437 76.7
Nn2g11952 Nelumbo nucifera HOM05D005526 ORTHO05D006802 2.6e-181 639.0 439 74.9
TWI18G0833 Tripterygium wilfordii HOM05D005526 ORTHO05D006802 4.4e-181 638.3 436 75.9
CiPaw.01G244400 Carya illinoinensis HOM05D005526 ORTHO05D006802 5.8e-181 637.9 439 75.6
ECA234G2940 Erigeron canadensis HOM05D005526 ORTHO05D006802 7.6e-181 637.5 439 75.4
Thecc.06G073100 Theobroma cacao HOM05D005526 ORTHO05D006802 2.9e-180 635.6 439 75.6
Gohir.D06G117200 Gossypium hirsutum HOM05D005526 ORTHO05D006802 2.1e-178 629.4 439 75.2
Manes.04G116500 Manihot esculenta HOM05D005526 ORTHO05D006802 2.1e-178 629.4 439 75.4
Glyma.15G010400 Glycine max HOM05D005526 ORTHO05D006802 6.0e-178 627.9 437 75.3
Gorai.010G134800 Gossypium raimondii HOM05D005526 ORTHO05D006802 6.0e-178 627.9 439 74.9
Glyma.13G363400 Glycine max HOM05D005526 ORTHO05D006802 7.8e-178 627.5 437 75.3
Gohir.A06G112600 Gossypium hirsutum HOM05D005526 ORTHO05D006802 2.3e-177 625.9 439 75.2
TWI75G1755 Tripterygium wilfordii HOM05D005526 ORTHO05D006802 3.9e-177 625.2 436 75.2
MD09G1221000 Malus domestica HOM05D005526 ORTHO05D006802 5.6e-176 621.3 442 74.4
FvH4_6g30340 Fragaria vesca HOM05D005526 ORTHO05D006802 2.8e-175 619.0 438 73.1
FAN02G2127 Fragaria x ananassa HOM05D005526 ORTHO05D006802 4.8e-175 618.2 438 73.3
Ca_01085_v3 Cicer arietinum L. HOM05D005526 ORTHO05D006802 6.9e-174 614.4 440 73.9
Lj3g0017842 Lotus japonicus HOM05D005526 ORTHO05D006802 2.0e-173 612.8 437 74.4
Prupe.3G079900 Prunus persica HOM05D005526 ORTHO05D006802 9.9e-173 610.5 451 72.5
CsaV3_4G001390 Cucumis sativus L. HOM05D005526 ORTHO05D006802 6.0e-170 601.3 437 72.1
Dinv30571 Davidia involucrata HOM05D005526 ORTHO05D006802 1.3e-169 600.1 360 85.6
Aqoxy7G02084 Aquilegia oxysepala HOM05D005526 ORTHO05D006802 3.9e-169 598.6 436 72.9
Sed0002477 Sechium edule HOM05D005526 ORTHO05D006802 1.5e-168 596.7 437 71.4
arahy.Tifrunner.gnm1.ann1.FYL3MV Arachis hypogaea HOM05D005526 ORTHO05D006802 1.9e-168 596.3 438 72.4
DCAR_025483 Daucus carota HOM05D005526 ORTHO05D006802 1.9e-168 596.3 438 72.6
Medtr2g103110 Medicago truncatula HOM05D005526 ORTHO05D006802 4.3e-168 595.1 445 71.2
Cpa.g.sc336.8 Carica papaya HOM05D005526 ORTHO05D006802 5.6e-168 594.7 445 72.6
Phvul.005G174900 Phaseolus vulgaris HOM05D005526 ORTHO05D006802 5.6e-168 594.7 438 72.4
MBI01_g11875_MAGBIO Magnolia biondii HOM05D005526 ORTHO05D006802 4.8e-167 591.7 446 70.2
Eucgr.J03045 Eucalyptus grandis HOM05D005526 ORTHO05D006802 1.4e-166 590.1 437 71.6
MSTRG.9436 Avicennia marina HOM05D005526 ORTHO05D006802 1.5e-165 586.6 439 70.2
Potri.001G172800 Populus trichocarpa HOM05D005526 ORTHO05D006802 7.6e-165 584.3 443 71.3
Solyc06g067990.3 Solanum lycopersicum HOM05D005526 ORTHO05D006802 2.2e-164 582.8 441 71.2
QL05p027824 Quercus lobata HOM05D005526 ORTHO05D006802 1.4e-163 580.1 522 62.3
CANSAT56G0953 Cannabis sativa HOM05D005526 ORTHO05D006802 4.6e-162 575.1 438 72.4
Hund06580 Selenicereus undatus HOM05D005526 ORTHO05D006802 7.9e-162 574.3 437 68.6
SalBow2G2365 Salvia bowleyana HOM05D005526 ORTHO05D006802 1.0e-161 573.9 438 69.2
PSO170G3249 Papaver somniferum HOM05D005526 ORTHO05D006802 3.9e-161 572.0 438 68.0
MD17G1204400 Malus domestica HOM05D005526 ORTHO05D006802 8.7e-161 570.9 523 62.5
THA.LOC104812497 Tarenaya hassleriana HOM05D005526 ORTHO05D006802 3.3e-160 568.9 440 69.8
PGR031G1627 Punica granatum HOM05D005526 ORTHO05D006802 4.3e-160 568.5 450 67.8
CSS0003126 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 4.0e-158 562.0 363 82.6
Migut.D01055 Erythranthe guttata HOM05D005526 ORTHO05D006802 6.9e-158 561.2 440 69.3
GSVIVG01017251001 Vitis vinifera HOM05D005526 ORTHO05D006802 2.0e-157 559.7 359 79.9
VMungo1080G0636 Vigna mungo HOM05D005526 ORTHO05D006802 1.3e-156 557.0 432 67.4
FAN09G0405 Fragaria x ananassa HOM05D005526 ORTHO05D006802 1.5e-152 543.5 438 67.1
Lj5C68G25 Lonicera japonica HOM05D005526 ORTHO05D006802 1.9e-152 543.1 361 78.4
Lsat_1_v5_gn_5_132520 Lactuca sativa HOM05D005526 ORTHO05D006802 1.3e-151 540.4 438 68.5
Sc10g0005720 Simmondsia chinensis HOM05D005526 ORTHO05D006802 2.2e-151 539.7 439 67.0
Sp5g35600 Schrenkiella parvula HOM05D005526 ORTHO05D006802 4.1e-150 535.4 406 69.5
AUR62016379 Chenopodium quinoa HOM05D005526 ORTHO05D006802 2.0e-149 533.1 437 64.5
Thhalv10018648m.g Eutrema salsugineum HOM05D005526 ORTHO05D006802 1.4e-147 526.9 406 69.5
CARHR074270 Cardamine hirsuta HOM05D005526 ORTHO05D006802 6.1e-146 521.5 409 68.9
Oeu052283.1 Olea europaea HOM05D005526 ORTHO05D006802 1.4e-145 520.4 457 65.6
SGA_v2.0_scaffold16G07615 Striga asiatica HOM05D005526 ORTHO05D006802 1.4e-145 520.4 415 66.7
BcaB02g07290 Brassica carinata HOM05D005526 ORTHO05D006802 2.5e-144 516.2 423 65.7
EL10Ac9g21940 Beta vulgaris HOM05D005526 ORTHO05D006802 3.7e-143 512.3 443 64.3
AT3G06820 Arabidopsis thaliana HOM05D005526 ORTHO05D006802 4.1e-142 508.8 407 68.1
arahy.Tifrunner.gnm1.ann1.IMA97E Arachis hypogaea HOM05D005526 ORTHO05D006802 9.1e-142 507.7 459 63.2
A07p26570 Brassica napus HOM05D005526 ORTHO05D006802 2.0e-141 506.5 420 65.5
ClCG07G012810 Citrullus lanatus HOM05D005526 ORTHO05D006802 2.6e-141 506.1 444 64.0
BcaC08g45297 Brassica carinata HOM05D005526 ORTHO05D006802 1.7e-140 503.4 424 64.6
C06p28990 Brassica napus HOM05D005526 ORTHO05D006802 2.9e-140 502.7 425 64.7
BolC6t38065H Brassica oleracea HOM05D005526 ORTHO05D006802 8.5e-140 501.1 427 64.2
AT1G80210 Arabidopsis thaliana HOM05D005526 ORTHO05D006802 4.2e-139 498.8 375 69.9
RcHm_v2.0_Chr2g0136621 Rosa chinensis HOM05D005526 ORTHO05D006802 7.2e-139 498.0 358 72.3
CiPaw.02G154800 Carya illinoinensis HOM05D005526 ORTHO05D006802 2.2e-135 486.5 324 78.1
COL.COLO4_12896 Corchorus olitorius HOM05D005526 ORTHO05D006802 2.2e-135 486.5 363 71.3
Lalb_Chr14g0373681 Lupinus albus HOM05D005526 ORTHO05D006802 2.8e-135 486.1 358 71.5
HanXRQChr10g0303071 Helianthus annuus HOM05D005526 ORTHO05D006802 7.0e-134 481.5 361 71.5
Peaxi162Scf00207g00731 Petunia axillaris HOM05D005526 ORTHO05D006802 1.2e-133 480.7 446 59.6
Nitab4.5_0000620g0060 Nicotiana tabacum HOM05D005526 ORTHO05D006802 2.6e-133 479.6 440 60.9
Nitab4.5_0013710g0010 Nicotiana tabacum HOM05D005526 ORTHO05D006802 8.5e-132 474.6 447 61.3
CDE02G1452 Ceratophyllum demersum HOM05D005526 ORTHO05D006802 1.1e-131 474.2 395 65.3
Cc04_g04020 Coffea canephora HOM05D005526 ORTHO05D006802 1.9e-131 473.4 360 70.8
Aa31LG4G500 Aethionema arabicum HOM05D005526 ORTHO05D006802 3.6e-130 469.2 406 63.8
MELO3C017901.2 Cucumis melo HOM05D005526 ORTHO05D006802 4.7e-130 468.8 357 68.9
CAN.G395.46 Capsicum annuum HOM05D005526 ORTHO05D006802 6.7e-129 464.9 360 70.0
BraA07t30300Z Brassica rapa HOM05D005526 ORTHO05D006802 1.1e-128 464.2 406 62.3
Psat5g300440 Pisum sativum HOM05D005526 ORTHO05D006802 1.5e-128 463.8 359 68.5
TPR.G37284 Trifolium pratense HOM05D005526 ORTHO05D006802 1.3e-127 460.7 366 67.8
AUR62011560 Chenopodium quinoa HOM05D005526 ORTHO05D006802 7.0e-126 454.9 437 58.1
Sopen06g025270 Solanum pennellii HOM05D005526 ORTHO05D006802 2.0e-125 453.4 361 68.4
Os05g0542600 Oryza sativa ssp. japonica HOM05D005526 ORTHO05D006802 1.0e-124 451.1 417 58.0
Oeu063802.2 Olea europaea HOM05D005526 ORTHO05D006802 2.1e-122 443.4 357 70.6
Zm00001eb294490 Zea mays HOM05D005526 ORTHO05D006802 2.7e-122 443.0 410 60.5
SEGI_35764 Sequoiadendron giganteum HOM05D005526 ORTHO05D006802 4.5e-117 425.6 416 55.3
Ah.01g020810 Amaranthus hybridus HOM05D005526 ORTHO05D006802 1.5e-115 420.6 446 57.2
unitig_899.g14780 Utricularia gibba HOM05D005526 ORTHO05D006802 1.8e-113 413.7 411 56.7
AL3G17940 Arabidopsis lyrata HOM05D005526 ORTHO05D006802 5.7e-112 408.7 326 65.6
AL2G41300 Arabidopsis lyrata HOM05D005526 ORTHO05D006802 8.6e-108 394.8 326 64.7
Carub.0002s2731 Capsella rubella HOM05D005526 ORTHO05D006802 1.2e-106 391.0 337 62.3
CDE01G0292 Ceratophyllum demersum HOM05D005526 ORTHO05D006802 2.3e-100 370.2 394 55.3
SGA_v2.0_scaffold37G14789 Striga asiatica HOM05D005526 ORTHO05D006802 1.2e-96 357.8 394 55.1
Pp3c27_4740 Physcomitrium patens HOM05D005526 ORTHO05D006802 2.2e-95 353.6 400 49.5
Mapoly0053s0043 Marchantia polymorpha HOM05D005526 ORTHO05D006802 6.4e-95 352.1 439 48.5
CBR_g46861 Chara braunii HOM05D005526 ORTHO05D006802 1.6e-90 337.4 407 45.9
HPP92_009843 Vanilla planifolia HOM05D005526 ORTHO05D006802 3.4e-88 329.7 336 53.9
ATR1156G007 Amborella trichopoda HOM05D005526 ORTHO05D006802 9.8e-88 328.2 363 54.3
Oeu014842.2 Olea europaea HOM05D005526 ORTHO05D006802 5.4e-86 322.4 325 57.8
Haze_16513 Corylus avellana HOM05D005526 ORTHO05D006802 4.6e-85 319.3 217 74.7
FAN14G4362 Fragaria x ananassa HOM05D005526 ORTHO05D006802 5.6e-83 312.4 302 59.9
Zm00001eb342510 Zea mays HOM05D005526 ORTHO05D006802 2.5e-67 260.4 205 69.3
Haze_16512 Corylus avellana HOM05D005526 ORTHO05D006802 3.1e-65 253.4 232 63.8
AagrBONN_evm.TU.Sc2ySwM_368.2431 Anthoceros agrestis HOM05D005526 ORTHO05D006802 3.1e-49 200.3 343 39.9
SMO196G0028 Selaginella moellendorffii HOM05D005526 ORTHO05D006802 1.3e-47 194.9 296 38.5
Sed0012845 Sechium edule HOM05D005526 ORTHO05D006802 4.3e-43 179.9 330 40.0
Cre11.g475400 Chlamydomonas reinhardtii HOM05D005526 ORTHO05D006802 2.3e-36 157.5 213 46.9
CSS0009710 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 9.7e-35 152.1 80 95.0
Lj5A68T70 Lonicera japonica HOM05D005526 ORTHO05D006802 2.2e-34 151.0 80 91.2
HanXRQChr10g0303081 Helianthus annuus HOM05D005526 ORTHO05D006802 5.3e-33 146.4 80 93.8
Sopen06g025280 Solanum pennellii HOM05D005526 ORTHO05D006802 2.0e-32 144.4 80 87.5
PGSC0003DMG401028513 Solanum tuberosum HOM05D005526 ORTHO05D006802 2.0e-32 144.4 80 87.5
Cc04_g04010 Coffea canephora HOM05D005526 ORTHO05D006802 2.2e-31 141.0 80 88.8
TPR.G37278 Trifolium pratense HOM05D005526 ORTHO05D006802 5.5e-30 136.3 80 85.0
FAN05G1558 Fragaria x ananassa HOM05D005526 ORTHO05D006802 1.2e-29 135.2 80 83.8
RcHm_v2.0_Chr2g0136631 Rosa chinensis HOM05D005526 ORTHO05D006802 6.1e-29 132.9 80 82.5
Lalb_Chr14g0373671 Lupinus albus HOM05D005526 ORTHO05D006802 7.9e-29 132.5 80 80.0
Sabra01G0138900 Salix brachista HOM05D005526 ORTHO05D006802 7.9e-29 132.5 80 81.2
GSVIVG01017250001 Vitis vinifera HOM05D005526 ORTHO05D006802 3.9e-28 130.2 73 87.7
ATR1156G076 Amborella trichopoda HOM05D005526 ORTHO05D006802 3.3e-27 127.1 80 78.8
AagrBONN_evm.TU.Sc2ySwM_368.2432 Anthoceros agrestis HOM05D005526 ORTHO05D006802 4.8e-26 123.2 80 73.8
SalBow8G0881 Salvia bowleyana HOM05D005526 ORTHO05D006802 1.4e-20 105.1 96 58.3
CAN.G395.47 Capsicum annuum HOM05D005526 ORTHO05D006802 4.2e-14 83.6 45 86.7
Gohir.A10G140700 Gossypium hirsutum HOM05D000009 ORTHO05D000008 1.1e-11 75.5 52 71.2
Pp3c25_2940 Physcomitrium patens HOM05D005526 ORTHO05D311957 2.0e-11 74.7 90 44.4
Pp3c6_24500 Physcomitrium patens HOM05D005526 ORTHO05D006802 2.4e-09 67.8 108 39.8
COL.COLO4_12895 Corchorus olitorius HOM05D005526 ORTHO05D006802 3.8e-07 60.5 30 93.3


User provided reference genes

Program Settings