Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037203 Camellia sinensis var. sinensis HOM05D001141 ORTHO05D043321 1.2e-39 166.0 82 100.0
CSS0021986 Camellia sinensis var. sinensis HOM05D001141 ORTHO05D001088 3.0e-38 161.4 79 98.7
Dinv38548 Davidia involucrata HOM05D001141 ORTHO05D001088 2.8e-28 128.3 79 77.2
Dinv20609 Davidia involucrata HOM05D001141 ORTHO05D001088 2.2e-25 118.6 79 72.2
GSVIVG01007671001 Vitis vinifera HOM05D001141 ORTHO05D001088 6.4e-25 117.1 79 74.7
Cpa.g.sc110.13 Carica papaya HOM05D001141 ORTHO05D001088 1.1e-24 116.3 79 72.2
CAN.G993.26 Capsicum annuum HOM05D001141 ORTHO05D001088 2.4e-24 115.2 79 70.9
Rhsim12G0167000 Rhododendron simsii HOM05D001141 ORTHO05D001088 4.2e-24 114.4 71 81.7
vmacro16635 Vaccinium macrocarpon HOM05D001141 ORTHO05D001088 1.2e-23 112.8 80 75.0
Solyc06g071680.4 Solanum lycopersicum HOM05D001141 ORTHO05D001088 2.1e-23 112.1 79 67.1
Sopen06g027990 Solanum pennellii HOM05D001141 ORTHO05D001088 2.1e-23 112.1 79 67.1
PGSC0003DMG400026989 Solanum tuberosum HOM05D001141 ORTHO05D001088 2.1e-23 112.1 79 67.1
Nitab4.5_0000003g0760 Nicotiana tabacum HOM05D001141 ORTHO05D003504 6.0e-23 110.5 79 68.4
Lj9A444G105 Lonicera japonica HOM05D001141 ORTHO05D001088 1.0e-22 109.8 78 71.8
Cc04_g11770 Coffea canephora HOM05D001141 ORTHO05D001088 1.3e-22 109.4 79 64.6
Hma1.2p1_0046F.1_g026980 Hydrangea macrophylla HOM05D001141 ORTHO05D001088 1.8e-22 109.0 73 75.3
Manes.14G061800 Manihot esculenta HOM05D001141 ORTHO05D001088 1.8e-22 109.0 79 69.6
Actinidia19123 Actinidia chinensis HOM05D001141 ORTHO05D001088 3.0e-22 108.2 79 69.6
CiPaw.12G030000 Carya illinoinensis HOM05D001141 ORTHO05D001088 3.0e-22 108.2 75 69.3
HanXRQChr08g0235101 Helianthus annuus HOM05D001141 ORTHO05D001088 1.1e-21 106.3 69 72.5
Sabra15G0106000 Salix brachista HOM05D001141 ORTHO05D001088 1.1e-21 106.3 72 72.2
ECA246G4296 Erigeron canadensis HOM05D001141 ORTHO05D001088 1.5e-21 105.9 69 71.0
QL10p007889 Quercus lobata HOM05D001141 ORTHO05D001088 1.5e-21 105.9 65 78.5
Nitab4.5_0002358g0040 Nicotiana tabacum HOM05D001141 ORTHO05D003504 2.5e-21 105.1 73 71.2
Potri.015G082500 Populus trichocarpa HOM05D001141 ORTHO05D001088 3.3e-21 104.8 72 70.8
Cfa019197 Carpinus fangiana HOM05D001141 ORTHO05D001088 4.3e-21 104.4 71 70.4
Peaxi162Scf00689g00017 Petunia axillaris HOM05D001141 ORTHO05D001088 4.3e-21 104.4 79 63.3
CANSAT80G0666 Cannabis sativa HOM05D001141 ORTHO05D001088 7.4e-21 103.6 82 65.9
Eucgr.K02807 Eucalyptus grandis HOM05D001141 ORTHO05D001088 9.6e-21 103.2 79 68.4
Haze_07567 Corylus avellana HOM05D001141 ORTHO05D165457 1.3e-20 102.8 71 69.0
Actinidia25113 Actinidia chinensis HOM05D001141 ORTHO05D001088 1.1e-19 99.8 79 65.8
TAR374G0280 Trochodendron aralioides HOM05D001141 ORTHO05D001088 2.4e-19 98.6 79 60.8
Gohir.A03G061700 Gossypium hirsutum HOM05D001141 ORTHO05D001088 4.0e-19 97.8 80 63.8
PGR044G2473 Punica granatum HOM05D001141 ORTHO05D001088 6.9e-19 97.1 79 58.2
Ciclev10020048m.g Citrus clementina HOM05D001141 ORTHO05D001088 1.2e-18 96.3 69 72.5
Gohir.D03G104300 Gossypium hirsutum HOM05D001141 ORTHO05D001088 2.0e-18 95.5 67 71.6
Gorai.003G110100 Gossypium raimondii HOM05D001141 ORTHO05D001088 2.0e-18 95.5 67 71.6
Potri.012G083800 Populus trichocarpa HOM05D001141 ORTHO05D001088 2.0e-18 95.5 61 75.4
RcHm_v2.0_Chr7g0192801 Rosa chinensis HOM05D001141 ORTHO05D001088 2.6e-18 95.1 81 64.2
TAR371G0555 Trochodendron aralioides HOM05D001141 ORTHO05D001088 3.4e-18 94.7 80 53.8
Lj4g0005788 Lotus japonicus HOM05D001141 ORTHO05D001088 7.6e-18 93.6 77 62.3
VMungo1215G3233 Vigna mungo HOM05D001141 ORTHO05D001088 7.6e-18 93.6 77 62.3
TPR.G16172 Trifolium pratense HOM05D001141 ORTHO05D001088 1.0e-17 93.2 69 66.7
Psat5g115840 Pisum sativum HOM05D001141 ORTHO05D001088 1.3e-17 92.8 74 66.2
TAR622G0353 Trochodendron aralioides HOM05D001141 ORTHO05D001088 1.3e-17 92.8 69 65.2
arahy.Tifrunner.gnm1.ann1.CE95IG Arachis hypogaea HOM05D001141 ORTHO05D001088 1.7e-17 92.4 69 66.7
MD06G1167500 Malus domestica HOM05D001141 ORTHO05D001088 2.2e-17 92.0 59 71.2
arahy.Tifrunner.gnm1.ann1.U3SYI0 Arachis hypogaea HOM05D001141 ORTHO05D001088 2.9e-17 91.7 69 65.2
FAN13G0879 Fragaria x ananassa HOM05D001141 ORTHO05D001088 2.9e-17 91.7 63 71.4
FvH4_5g06060 Fragaria vesca HOM05D001141 ORTHO05D001088 3.8e-17 91.3 63 71.4
FAN04G3202 Fragaria x ananassa HOM05D001141 ORTHO05D003504 3.8e-17 91.3 63 71.4
FAN18G3386 Fragaria x ananassa HOM05D001141 ORTHO05D001088 3.8e-17 91.3 63 71.4
Phvul.003G203800 Phaseolus vulgaris HOM05D001141 ORTHO05D001088 3.8e-17 91.3 69 65.2
Ca_16146_v3 Cicer arietinum L. HOM05D001141 ORTHO05D001088 4.9e-17 90.9 60 73.3
Prupe.5G167200 Prunus persica HOM05D001141 ORTHO05D001088 1.1e-16 89.7 60 68.3
Sc12g0005070 Simmondsia chinensis HOM05D001141 ORTHO05D001088 1.1e-16 89.7 57 73.7
Sabra12G0060400 Salix brachista HOM05D001141 ORTHO05D001088 1.4e-16 89.4 59 74.6
Thecc.03G021200 Theobroma cacao HOM05D001141 ORTHO05D001088 1.4e-16 89.4 60 71.7
MSTRG.9689 Avicennia marina HOM05D001141 ORTHO05D001088 2.5e-16 88.6 68 69.1
Glyma.17G085700 Glycine max HOM05D001141 ORTHO05D001088 2.5e-16 88.6 67 64.2
Lsat_1_v5_gn_5_15800 Lactuca sativa HOM05D001141 ORTHO05D001088 2.5e-16 88.6 69 60.9
TWI39G0851 Tripterygium wilfordii HOM05D001141 ORTHO05D001088 2.5e-16 88.6 80 57.5
VMungo1309G0502 Vigna mungo HOM05D001141 ORTHO05D001088 2.5e-16 88.6 58 74.1
Nn4g22638 Nelumbo nucifera HOM05D001141 ORTHO05D001088 4.2e-16 87.8 68 64.7
FAN08G2678 Fragaria x ananassa HOM05D001141 ORTHO05D001088 5.5e-16 87.4 63 69.8
Atru.chr9.2555 Acer truncatum HOM05D001141 ORTHO05D001088 7.1e-16 87.0 81 63.0
Glyma.05G040600 Glycine max HOM05D001141 ORTHO05D001088 9.3e-16 86.7 60 70.0
ClCG06G017290 Citrullus lanatus HOM05D001141 ORTHO05D001088 1.2e-15 86.3 65 66.2
COL.COLO4_30162 Corchorus olitorius HOM05D001141 ORTHO05D001088 1.6e-15 85.9 80 57.5
MD14G1173000 Malus domestica HOM05D001141 ORTHO05D001088 1.6e-15 85.9 59 67.8
Medtr3g077160 Medicago truncatula HOM05D001141 ORTHO05D001088 2.1e-15 85.5 77 58.4
Sed0023115 Sechium edule HOM05D001141 ORTHO05D001088 2.1e-15 85.5 65 66.2
CsaV3_1G001190 Cucumis sativus L. HOM05D001141 ORTHO05D001088 2.7e-15 85.1 60 68.3
Glyma.04G187000 Glycine max HOM05D001141 ORTHO05D001088 1.0e-14 83.2 76 56.6
TWI23G0266 Tripterygium wilfordii HOM05D001141 ORTHO05D001088 1.0e-14 83.2 80 55.0
Hund09460 Selenicereus undatus HOM05D001141 ORTHO05D001088 2.3e-14 82.0 61 67.2
Oeu040854.4 Olea europaea HOM05D001141 ORTHO05D001088 3.0e-14 81.6 58 67.2
Phvul.009G175000 Phaseolus vulgaris HOM05D001141 ORTHO05D001088 3.9e-14 81.3 58 69.0
AUR62008158 Chenopodium quinoa HOM05D001141 ORTHO05D001088 5.1e-14 80.9 61 63.9
Duzib205G0995 Durio zibethinus HOM05D001141 ORTHO05D001088 5.1e-14 80.9 80 53.8
MBI10_g00743_MAGBIO Magnolia biondii HOM05D001141 ORTHO05D001088 5.1e-14 80.9 79 53.2
Cfa019198 Carpinus fangiana HOM05D001141 ORTHO05D001088 6.7e-14 80.5 67 61.2
AUR62028738 Chenopodium quinoa HOM05D001141 ORTHO05D001088 8.7e-14 80.1 61 63.9
SGA_v2.0_scaffold114G31814 Striga asiatica HOM05D001141 ORTHO05D001088 8.7e-14 80.1 80 55.0
Lalb_Chr12g0201841 Lupinus albus HOM05D001141 ORTHO05D001088 1.1e-13 79.7 69 63.8
Nn3g16739 Nelumbo nucifera HOM05D001141 ORTHO05D001088 1.5e-13 79.3 62 62.9
Nitab4.5_0005021g0010 Nicotiana tabacum HOM05D000001 ORTHO05D009144 1.5e-13 79.3 56 69.6
SalBow6G2334 Salvia bowleyana HOM05D001141 ORTHO05D001088 1.9e-13 79.0 82 56.1
SalBow6G4712 Salvia bowleyana HOM05D001141 ORTHO05D001088 1.9e-13 79.0 82 56.1
Peaxi162Scf00089g01438 Petunia axillaris HOM05D001141 ORTHO05D001088 2.5e-13 78.6 73 60.3
SGA_v2.0_scaffold7G04157 Striga asiatica HOM05D001141 ORTHO05D402551 3.3e-13 78.2 61 65.6
DCAR_026166 Daucus carota HOM05D001141 ORTHO05D001088 5.7e-13 77.4 56 66.1
Lj1g0024817 Lotus japonicus HOM05D001141 ORTHO05D001088 5.7e-13 77.4 61 63.9
arahy.Tifrunner.gnm1.ann1.3S2NM0 Arachis hypogaea HOM05D001141 ORTHO05D001088 7.4e-13 77.0 58 65.5
arahy.Tifrunner.gnm1.ann1.AZF8WI Arachis hypogaea HOM05D001141 ORTHO05D001088 1.6e-12 75.9 60 63.3
CAN.G338.18 Capsicum annuum HOM05D001141 ORTHO05D001088 1.6e-12 75.9 62 61.3
Migut.D01991 Erythranthe guttata HOM05D001141 ORTHO05D001088 2.1e-12 75.5 68 60.3
THA.LOC104821488 Tarenaya hassleriana HOM05D001141 ORTHO05D001088 2.1e-12 75.5 62 62.9
Thhalv10005608m.g Eutrema salsugineum HOM05D001141 ORTHO05D001088 6.2e-12 73.9 64 60.9
ATR1154G007 Amborella trichopoda HOM05D001141 ORTHO05D001088 1.1e-11 73.2 80 45.0
PSO017G4046 Papaver somniferum HOM05D001141 ORTHO05D001088 1.1e-11 73.2 61 59.0
PSO478G3525 Papaver somniferum HOM05D001141 ORTHO05D001088 1.1e-11 73.2 61 59.0
BcaC01g02554 Brassica carinata HOM05D001141 ORTHO05D001088 1.4e-11 72.8 62 61.3
A06p29840 Brassica napus HOM05D001141 ORTHO05D001088 1.4e-11 72.8 62 61.3
C03p63520 Brassica napus HOM05D001141 ORTHO05D001088 1.4e-11 72.8 62 61.3
BolC3t18610H Brassica oleracea HOM05D001141 ORTHO05D001088 1.4e-11 72.8 62 61.3
BraA06t25932Z Brassica rapa HOM05D001141 ORTHO05D001088 1.4e-11 72.8 62 61.3
CARHR276930 Cardamine hirsuta HOM05D001141 ORTHO05D001088 1.4e-11 72.8 74 55.4
Sp2g26240 Schrenkiella parvula HOM05D001141 ORTHO05D001088 1.4e-11 72.8 62 62.9
BcaB02g09723 Brassica carinata HOM05D001141 ORTHO05D001088 1.8e-11 72.4 62 61.3
Lalb_Chr11g0070321 Lupinus albus HOM05D001141 ORTHO05D001088 3.1e-11 71.6 77 54.5
Aqoxy5G03792 Aquilegia oxysepala HOM05D001141 ORTHO05D001088 5.3e-11 70.9 85 44.7
Lalb_Chr07g0182931 Lupinus albus HOM05D001141 ORTHO05D001088 5.3e-11 70.9 59 61.0
AL8G40170 Arabidopsis lyrata HOM05D001141 ORTHO05D001088 6.9e-11 70.5 64 59.4
Ah.11g051340 Amaranthus hybridus HOM05D001141 ORTHO05D001088 9.0e-11 70.1 61 54.1
HPP92_013428 Vanilla planifolia HOM05D001141 ORTHO05D001088 9.0e-11 70.1 56 58.9
Carub.0008s2386 Capsella rubella HOM05D001141 ORTHO05D001088 1.2e-10 69.7 64 59.4
DCAR_018526 Daucus carota HOM05D001141 ORTHO05D001088 2.0e-10 68.9 58 62.1
Sopen03g031490 Solanum pennellii HOM05D001141 ORTHO05D001088 2.0e-10 68.9 57 59.6
AT5G63110 Arabidopsis thaliana HOM05D001141 ORTHO05D001088 2.6e-10 68.6 64 57.8
EL10Ac5g10672 Beta vulgaris HOM05D001141 ORTHO05D001088 5.8e-10 67.4 58 58.6
SEGI_32589 Sequoiadendron giganteum HOM05D001141 ORTHO05D043321 7.6e-10 67.0 76 46.1
CDE07G1823 Ceratophyllum demersum HOM05D001141 ORTHO05D001088 1.0e-09 66.6 66 54.5
PGSC0003DMG400018178 Solanum tuberosum HOM05D001141 ORTHO05D001088 1.0e-09 66.6 57 57.9
A09p08110 Brassica napus HOM05D001141 ORTHO05D001088 1.3e-09 66.2 61 59.0
C09p09170 Brassica napus HOM05D001141 ORTHO05D001088 1.3e-09 66.2 61 59.0
BolC9t53830H Brassica oleracea HOM05D001141 ORTHO05D001088 1.3e-09 66.2 61 59.0
BraA09t36462Z Brassica rapa HOM05D001141 ORTHO05D001088 1.3e-09 66.2 61 59.0
Aqoxy7G02574 Aquilegia oxysepala HOM05D001141 ORTHO05D001088 1.7e-09 65.9 59 54.2
BcaB04g19939 Brassica carinata HOM05D001141 ORTHO05D001088 1.7e-09 65.9 61 59.0
Solyc03g112410.2 Solanum lycopersicum HOM05D001141 ORTHO05D001088 1.7e-09 65.9 57 59.6
Aa31LG1G18870 Aethionema arabicum HOM05D001141 ORTHO05D001088 3.8e-09 64.7 65 58.5
Cfa019199 Carpinus fangiana HOM05D001141 ORTHO05D125123 5.0e-09 64.3 47 66.0
SHI17213 Sapria himalayana HOM05D001141 ORTHO05D001088 8.4e-09 63.5 47 66.0
SGA_v2.0_scaffold90G27858 Striga asiatica HOM05D001141 ORTHO05D001088 1.1e-08 63.2 58 51.7
AagrBONN_evm.TU.Sc2ySwM_369.400 Anthoceros agrestis HOM05D001141 ORTHO05D001088 9.3e-08 60.1 58 50.0
unitig_37.g12745 Utricularia gibba HOM05D001141 ORTHO05D001088 1.2e-07 59.7 61 49.2
Aqoxy2G03804 Aquilegia oxysepala HOM05D001141 ORTHO05D001088 3.5e-07 58.2 66 47.0
ATR0737G123 Amborella trichopoda HOM05D001141 ORTHO05D001088 7.9e-07 57.0 62 46.8
Pp3c13_20230 Physcomitrium patens HOM05D001141 ORTHO05D001088 2.3e-06 55.5 68 44.1
Pp3c3_26550 Physcomitrium patens HOM05D001141 ORTHO05D001088 2.3e-06 55.5 63 44.4
Mapoly0107s0034 Marchantia polymorpha HOM05D001141 ORTHO05D001088 3.9e-06 54.7 68 47.1
FvH4_1g25790 Fragaria vesca HOM05D001141 ORTHO05D001088 5.1e-06 54.3 42 59.5
FAN19G2289 Fragaria x ananassa HOM05D001141 ORTHO05D001088 5.1e-06 54.3 42 59.5
FAN28G2109 Fragaria x ananassa HOM05D001141 ORTHO05D208534 5.1e-06 54.3 42 59.5
Os08g0344100 Oryza sativa ssp. japonica HOM05D001141 ORTHO05D001088 5.1e-06 54.3 80 33.8
Zm00001eb177560 Zea mays HOM05D001141 ORTHO05D001088 5.1e-06 54.3 62 43.5


User provided reference genes

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