Gene: AL8G40170

General Information

Structural Information

  • Species Arabidopsis lyrata
  • Gene Identifier AL8G40170
  • Transcript Identifier AL8G40170.t1
  • Gene Type Coding gene
  • Location scaffold_8 : 20842450-20844841 : negative

Gene Family Information

  • ID HOM05D001141
  • #Genes/#Species 542/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id AL8G40170.v2.1
  • synonym fgenesh2_kg.8__2309__AT5G63110.1
  • pacid 35949264

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009845
ISO
PLAZA Integrative Orthologyseed germination AT5G35600
GO:1990619
ISO
PLAZA Integrative Orthologyhistone H3-K9 deacetylation AT3G44680
GO:0010431
ISO
PLAZA Integrative Orthologyseed maturation AT5G63110
GO:0010228
ISO
PLAZA Integrative Orthologyvegetative to reproductive phase transition of meristem AT5G63110
GO:0016441
ISO
PLAZA Integrative Orthologyposttranscriptional gene silencing AT5G63110
GO:0048510
ISO
PLAZA Integrative Orthologyregulation of timing of transition from vegetative to reproductive phase AT5G63110
GO:0009737
ISO
PLAZA Integrative Orthologyresponse to abscisic acid AT5G63110
GO:0009553
ISO
PLAZA Integrative Orthologyembryo sac development AT5G35600
GO:1900055
ISO
PLAZA Integrative Orthologyregulation of leaf senescence AT3G44680
GO:0009793
ISO
PLAZA Integrative Orthologyembryo development ending in seed dormancy AT5G63110
GO:0009651
ISO
PLAZA Integrative Orthologyresponse to salt stress AT5G63110
GO:0010187
ISO
PLAZA Integrative Orthologynegative regulation of seed germination AT3G44680
GO:0016458
ISO
PLAZA Integrative Orthologygene silencing AT5G63110
GO:0016575
IEA
InterProhistone deacetylation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G63110
GO:0004407
IEA
InterProhistone deacetylase activity
GO:0043565
ISO
PLAZA Integrative Orthologysequence-specific DNA binding AT3G44680

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT3G44680
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT3G44680
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G63110
GO:0009941
ISO
PLAZA Integrative Orthologychloroplast envelope AT5G63110

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003084 Histone deacetylase
IPR023801 Histone deacetylase domain
IPR000286 Histone deacetylase family
IPR023696 Ureohydrolase domain superfamily
IPR037138 Histone deacetylase domain superfamily
Mapman id Description
12.3.2.1.1.2.1 Chromatin organisation.post-translational histone modification.histone deacetylation.HD1 histone deacetylase family.class-I histone deacetylase activities.SNL-HDA19 histone deacetylase complex.deacetylase component HDA19
12.3.2.1.1.3 Chromatin organisation.post-translational histone modification.histone deacetylation.HD1 histone deacetylase family.class-I histone deacetylase activities.histone deacetylase (HDA8)