Gene: Ah.11g051340
General Information
Structural Information
- Species Amaranthus hybridus
- Gene Identifier Ah.11g051340
- Transcript Identifier Ah.11g051340-v1.1.a1
- Gene Type Coding gene
- Location AmaHy_arrow1_Scaffold_11 : 22344567-22349326 : positive
Gene Family Information
- ID HOM05D001141
- #Genes/#Species 542/100
- Phylogenetic origin
- ID ORTHO05D001088
- #Genes/#Species 493/100
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Ah.11g051340-v1.1.a1
Descriptions
- Description Histone deacetylase 6 (AtHDA6) (EC 3.5.1.98)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0010431 | ISO | PLAZA Integrative Orthology | seed maturation | AT5G63110 |
GO:2000026 | ISO | PLAZA Integrative Orthology | regulation of multicellular organismal development | AT4G38130 |
GO:1990619 | ISO | PLAZA Integrative Orthology | histone H3-K9 deacetylation | AT3G44680 |
GO:0010228 | ISO | PLAZA Integrative Orthology | vegetative to reproductive phase transition of meristem | AT5G63110 |
GO:0016441 | ISO | PLAZA Integrative Orthology | posttranscriptional gene silencing | AT5G63110 |
GO:0048510 | ISO | PLAZA Integrative Orthology | regulation of timing of transition from vegetative to reproductive phase | AT5G63110 |
GO:0009737 | ISO | PLAZA Integrative Orthology | response to abscisic acid | AT5G63110 |
GO:0009845 | ISO | PLAZA Integrative Orthology | seed germination | AT5G35600 |
GO:0042742 | ISO | PLAZA Integrative Orthology | defense response to bacterium | AT4G38130 |
GO:0009861 | ISO | PLAZA Integrative Orthology | jasmonic acid and ethylene-dependent systemic resistance | AT4G38130 |
GO:0016458 | ISO | PLAZA Integrative Orthology | gene silencing | AT5G63110 |
GO:0016573 | ISO | PLAZA Integrative Orthology | histone acetylation | AT4G38130 |
GO:0045892 | ISO | PLAZA Integrative Orthology | negative regulation of transcription, DNA-templated | AT4G38130 |
GO:1902459 | ISO | PLAZA Integrative Orthology | positive regulation of stem cell population maintenance | AT4G38130 |
GO:0009553 | ISO | PLAZA Integrative Orthology | embryo sac development | AT5G35600 |
GO:1900055 | ISO | PLAZA Integrative Orthology | regulation of leaf senescence | AT3G44680 |
GO:1901001 | ISO | PLAZA Integrative Orthology | negative regulation of response to salt stress | AT4G38130 |
GO:0009793 | ISO | PLAZA Integrative Orthology | embryo development ending in seed dormancy | AT5G63110 |
GO:0009651 | ISO | PLAZA Integrative Orthology | response to salt stress | AT5G63110 |
GO:0010187 | ISO | PLAZA Integrative Orthology | negative regulation of seed germination | AT3G44680 |
GO:0009294 | ISO | PLAZA Integrative Orthology | DNA mediated transformation | AT4G38130 |
GO:0016575 | IEA | InterPro | histone deacetylation |
Molecular Function
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT5G63110 |
GO:0004407 | IEA | InterPro | histone deacetylase activity | |
GO:0043565 | ISO | PLAZA Integrative Orthology | sequence-specific DNA binding | AT3G44680 |
Cellular Component
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0005737 | ISO | PLAZA Integrative Orthology | cytoplasm | AT3G44680 |
GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT5G63110 |
GO:0009941 | ISO | PLAZA Integrative Orthology | chloroplast envelope | AT5G63110 |
GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT3G44680 |
GO:0000118 | ISO | PLAZA Integrative Orthology | histone deacetylase complex | AT4G38130 |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
Mapman id | Description |
---|---|
12.3.2.1.1.2.1 | Chromatin organisation.post-translational histone modification.histone deacetylation.HD1 histone deacetylase family.class-I histone deacetylase activities.SNL-HDA19 histone deacetylase complex.deacetylase component HDA19 |
12.3.2.1.1.3 | Chromatin organisation.post-translational histone modification.histone deacetylation.HD1 histone deacetylase family.class-I histone deacetylase activities.histone deacetylase (HDA8) |