Gene: Ah.11g051340

General Information

Structural Information

  • Species Amaranthus hybridus
  • Gene Identifier Ah.11g051340
  • Transcript Identifier Ah.11g051340-v1.1.a1
  • Gene Type Coding gene
  • Location AmaHy_arrow1_Scaffold_11 : 22344567-22349326 : positive

Gene Family Information

  • ID HOM05D001141
  • #Genes/#Species 542/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Ah.11g051340-v1.1.a1

Descriptions

  • Description Histone deacetylase 6 (AtHDA6) (EC 3.5.1.98)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010431
ISO
PLAZA Integrative Orthologyseed maturation AT5G63110
GO:2000026
ISO
PLAZA Integrative Orthologyregulation of multicellular organismal development AT4G38130
GO:1990619
ISO
PLAZA Integrative Orthologyhistone H3-K9 deacetylation AT3G44680
GO:0010228
ISO
PLAZA Integrative Orthologyvegetative to reproductive phase transition of meristem AT5G63110
GO:0016441
ISO
PLAZA Integrative Orthologyposttranscriptional gene silencing AT5G63110
GO:0048510
ISO
PLAZA Integrative Orthologyregulation of timing of transition from vegetative to reproductive phase AT5G63110
GO:0009737
ISO
PLAZA Integrative Orthologyresponse to abscisic acid AT5G63110
GO:0009845
ISO
PLAZA Integrative Orthologyseed germination AT5G35600
GO:0042742
ISO
PLAZA Integrative Orthologydefense response to bacterium AT4G38130
GO:0009861
ISO
PLAZA Integrative Orthologyjasmonic acid and ethylene-dependent systemic resistance AT4G38130
GO:0016458
ISO
PLAZA Integrative Orthologygene silencing AT5G63110
GO:0016573
ISO
PLAZA Integrative Orthologyhistone acetylation AT4G38130
GO:0045892
ISO
PLAZA Integrative Orthologynegative regulation of transcription, DNA-templated AT4G38130
GO:1902459
ISO
PLAZA Integrative Orthologypositive regulation of stem cell population maintenance AT4G38130
GO:0009553
ISO
PLAZA Integrative Orthologyembryo sac development AT5G35600
GO:1900055
ISO
PLAZA Integrative Orthologyregulation of leaf senescence AT3G44680
GO:1901001
ISO
PLAZA Integrative Orthologynegative regulation of response to salt stress AT4G38130
GO:0009793
ISO
PLAZA Integrative Orthologyembryo development ending in seed dormancy AT5G63110
GO:0009651
ISO
PLAZA Integrative Orthologyresponse to salt stress AT5G63110
GO:0010187
ISO
PLAZA Integrative Orthologynegative regulation of seed germination AT3G44680
GO:0009294
ISO
PLAZA Integrative OrthologyDNA mediated transformation AT4G38130
GO:0016575
IEA
InterProhistone deacetylation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G63110
GO:0004407
IEA
InterProhistone deacetylase activity
GO:0043565
ISO
PLAZA Integrative Orthologysequence-specific DNA binding AT3G44680

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT3G44680
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G63110
GO:0009941
ISO
PLAZA Integrative Orthologychloroplast envelope AT5G63110
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT3G44680
GO:0000118
ISO
PLAZA Integrative Orthologyhistone deacetylase complex AT4G38130

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR037138 Histone deacetylase domain superfamily
IPR000286 Histone deacetylase family
IPR003084 Histone deacetylase
IPR023696 Ureohydrolase domain superfamily
IPR023801 Histone deacetylase domain
Mapman id Description
12.3.2.1.1.2.1 Chromatin organisation.post-translational histone modification.histone deacetylation.HD1 histone deacetylase family.class-I histone deacetylase activities.SNL-HDA19 histone deacetylase complex.deacetylase component HDA19
12.3.2.1.1.3 Chromatin organisation.post-translational histone modification.histone deacetylation.HD1 histone deacetylase family.class-I histone deacetylase activities.histone deacetylase (HDA8)