Gene: AT5G63110

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G63110
  • Transcript Identifier AT5G63110.1
  • Gene Type Coding gene
  • Location Chr5 : 25315834-25318227 : negative

Gene Family Information

  • ID HOM05D001141
  • #Genes/#Species 542/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G63110.1
  • symbol HDA6
  • Alias ATHDA6,HISTONE DEACETYLASE 6,AXE1,RPD3B,RTS1,RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1,SIL1
  • uniprot Q9FML2

Descriptions

  • Description histone deacetylase 6
  • Computational description histone deacetylase 6 (HDA6); FUNCTIONS IN: histone deacetylase activity; INVOLVED IN: response to salt stress, gene silencing, posttranscriptional gene silencing, response to abscisic acid stimulus, histone deacetylation; LOCATED IN: nucleus, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase (InterPro:IPR003084), Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 1 (TAIR:AT4G38130.1); Has 8759 Blast hits to 8549 proteins in 1444 species: Archae - 221; Bacteria - 3162; Metazoa - 1525; Fungi - 546; Plants - 480; Viruses - 0; Other Eukaryotes - 2825 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010228
IMP
Gene Ontologyvegetative to reproductive phase transition of meristem1
GO:0016575
IEA
GOA Databasehistone deacetylation
GO:0016575
IMP
Gene Ontologyhistone deacetylation2
GO:0016575
IEA
InterProhistone deacetylation
GO:0006325
IEA
GOA Databasechromatin organization
GO:0070932
IEA
GOA Databasehistone H3 deacetylation
GO:0016458
IMP
Gene Ontologygene silencing3
GO:0048510
IMP
Gene Ontologyregulation of timing of transition from vegetative to reproductive phase4
GO:0010431
IMP
Gene Ontologyseed maturation5
GO:0009793
IMP
Gene Ontologyembryo development ending in seed dormancy5
GO:0009737
IMP
Gene Ontologyresponse to abscisic acid6
GO:0009651
IMP
Gene Ontologyresponse to salt stress6
GO:0016441
IMP
Gene Ontologyposttranscriptional gene silencing7

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004407
IEA
GOA Databasehistone deacetylase activity
GO:0004407
IMP
ISS
Gene Ontologyhistone deacetylase activity1 8
GO:0004407
IEA
InterProhistone deacetylase activity
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0008270
ISS
Gene Ontologyzinc ion binding9
GO:0005515
IPI
Gene Ontologyprotein binding10
GO:0032041
IEA
Gene OntologyNAD-dependent histone deacetylase activity (H3-K14 specific)

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009941
IDA
GOA Databasechloroplast envelope
GO:0009941
HDA
Gene Ontologychloroplast envelope11
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM
Gene Ontologynucleus2
GO:0005730
IEA
GOA Databasenucleolus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003084 Histone deacetylase
IPR000286 Histone deacetylase family
IPR023801 Histone deacetylase domain
IPR037138 Histone deacetylase domain superfamily
IPR023696 Ureohydrolase domain superfamily
Mapman id Description
12.3.2.1.1.2.1 Chromatin organisation.post-translational histone modification.histone deacetylation.HD1 histone deacetylase family.class-I histone deacetylase activities.SNL-HDA19 histone deacetylase complex.deacetylase component HDA19
12.3.2.1.1.3 Chromatin organisation.post-translational histone modification.histone deacetylation.HD1 histone deacetylase family.class-I histone deacetylase activities.histone deacetylase (HDA8)