Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0037159 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 3.4e-156 555.1 299 100.0
CSS0027843 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 4.6e-145 518.1 312 90.4
CSS0027553 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 5.2e-125 451.4 284 88.4
Rhsim03G0269700 Rhododendron simsii HOM05D007201 ORTHO05D009122 1.9e-103 379.8 311 66.9
Actinidia03796 Actinidia chinensis HOM05D007201 ORTHO05D009122 1.9e-95 353.2 322 63.0
TAR626G0209 Trochodendron aralioides HOM05D007201 ORTHO05D009122 8.2e-78 294.7 316 52.8
vmacro22702 Vaccinium macrocarpon HOM05D007201 ORTHO05D009122 9.1e-77 291.2 424 46.9
Haze_21242 Corylus avellana HOM05D007201 ORTHO05D009122 2.9e-75 286.2 315 50.5
Cfa012872 Carpinus fangiana HOM05D007201 ORTHO05D009122 2.3e-72 276.6 315 49.2
Lju50A20G7 Lonicera japonica HOM05D007201 ORTHO05D009122 8.8e-72 274.6 332 55.4
QL11p005700 Quercus lobata HOM05D007201 ORTHO05D009122 5.7e-71 271.9 318 48.7
Thecc.09G202300 Theobroma cacao HOM05D007201 ORTHO05D009122 2.2e-70 270.0 317 50.5
CiPaw.15G000100 Carya illinoinensis HOM05D007201 ORTHO05D009122 3.7e-70 269.2 314 48.7
Sabra06G0061200 Salix brachista HOM05D007201 ORTHO05D009122 7.0e-69 265.0 374 43.9
Potri.006G081100 Populus trichocarpa HOM05D007201 ORTHO05D009122 1.2e-68 264.2 354 46.0
Gohir.D04G008200 Gossypium hirsutum HOM05D007201 ORTHO05D009122 5.9e-68 261.9 313 50.8
GSVIVG01034266001 Vitis vinifera HOM05D007201 ORTHO05D009122 1.3e-67 260.8 315 52.7
Ciclev10008517m.g Citrus clementina HOM05D007201 ORTHO05D009122 2.5e-66 256.5 320 49.1
Dinv26498 Davidia involucrata HOM05D007201 ORTHO05D009122 3.6e-65 252.7 317 51.4
Atru.chr7.298 Acer truncatum HOM05D007201 ORTHO05D009122 1.4e-64 250.8 309 49.2
RcHm_v2.0_Chr4g0384751 Rosa chinensis HOM05D007201 ORTHO05D009122 1.4e-64 250.8 316 45.3
Gorai.012G009900 Gossypium raimondii HOM05D007201 ORTHO05D009122 1.8e-64 250.4 320 49.1
Cc06_g23490 Coffea canephora HOM05D007201 ORTHO05D009122 9.7e-63 244.6 342 44.4
FvH4_4g00131 Fragaria vesca HOM05D007201 ORTHO05D009122 4.8e-62 242.3 317 45.1
Prupe.1G000600 Prunus persica HOM05D007201 ORTHO05D009122 4.8e-62 242.3 316 44.3
Manes.02G222200 Manihot esculenta HOM05D007201 ORTHO05D009122 3.1e-61 239.6 321 45.5
MELO3C010035.2 Cucumis melo HOM05D007201 ORTHO05D009122 1.6e-60 237.3 314 46.2
MD04G1000600 Malus domestica HOM05D007201 ORTHO05D009122 4.5e-60 235.7 316 45.9
COL.COLO4_09000 Corchorus olitorius HOM05D007201 ORTHO05D009122 1.0e-59 234.6 297 50.2
CsaV3_1G044360 Cucumis sativus L. HOM05D007201 ORTHO05D009122 1.0e-59 234.6 316 46.2
FAN12G0236 Fragaria x ananassa HOM05D007201 ORTHO05D009122 8.5e-59 231.5 313 43.8
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 1.1e-58 231.1 302 45.4
Sc10g0006090 Simmondsia chinensis HOM05D007201 ORTHO05D009122 3.2e-58 229.6 315 45.4
arahy.Tifrunner.gnm1.ann1.X4HTYC Arachis hypogaea HOM05D007201 ORTHO05D009122 8.8e-56 221.5 315 49.5
Nn8g41282 Nelumbo nucifera HOM05D007201 ORTHO05D009122 1.5e-55 220.7 314 45.9
Peaxi162Scf00047g02450 Petunia axillaris HOM05D007201 ORTHO05D009122 3.4e-55 219.5 312 43.9
Hund22525 Selenicereus undatus HOM05D007201 ORTHO05D009122 3.4e-55 219.5 303 44.6
Nitab4.5_0004827g0030 Nicotiana tabacum HOM05D007201 ORTHO05D009122 4.4e-55 219.2 345 44.9
arahy.Tifrunner.gnm1.ann1.G7GJBK Arachis hypogaea HOM05D007201 ORTHO05D009122 5.7e-55 218.8 315 49.2
PSO339G5324 Papaver somniferum HOM05D007201 ORTHO05D009122 2.8e-54 216.5 320 44.4
ECA240G0013 Erigeron canadensis HOM05D006383 ORTHO05D007815 8.3e-54 214.9 329 41.3
Lsat_1_v5_gn_5_80700 Lactuca sativa HOM05D007201 ORTHO05D009122 3.5e-52 209.5 315 41.6
Sopen12g004380 Solanum pennellii HOM05D007201 ORTHO05D009122 7.7e-52 208.4 361 41.3
Solyc12g009390.2 Solanum lycopersicum HOM05D007201 ORTHO05D009122 3.8e-51 206.1 361 41.3
PGSC0003DMG400002893 Solanum tuberosum HOM05D007201 ORTHO05D009122 3.8e-51 206.1 352 38.9
PGR142G4385 Punica granatum HOM05D007201 ORTHO05D009122 5.0e-51 205.7 319 41.1
SGA_v2.0_scaffold21G09583 Striga asiatica HOM05D007201 ORTHO05D009122 6.6e-51 205.3 360 39.7
Glyma.12G016400 Glycine max HOM05D007201 ORTHO05D009122 4.2e-50 202.6 313 39.6
Aqoxy7G02518 Aquilegia oxysepala HOM05D007201 ORTHO05D009122 5.5e-50 202.2 327 40.7
Eucgr.C00055 Eucalyptus grandis HOM05D007201 ORTHO05D009122 1.6e-49 200.7 314 43.3
Lj3g0009807 Lotus japonicus HOM05D007201 ORTHO05D009122 2.1e-49 200.3 310 41.6
Nitab4.5_0000073g0490 Nicotiana tabacum HOM05D007201 ORTHO05D009122 4.7e-49 199.1 375 41.9
EL10Ac2g03602 Beta vulgaris HOM05D007201 ORTHO05D009122 1.8e-48 197.2 389 37.3
Glyma.11G109000 Glycine max HOM05D007201 ORTHO05D009122 1.8e-48 197.2 314 39.2
Zm00001eb227240 Zea mays HOM05D007201 ORTHO05D009122 2.3e-48 196.8 316 41.1
Phvul.011G018600 Phaseolus vulgaris HOM05D007201 ORTHO05D009122 5.2e-48 195.7 312 38.8
ECA234G1264 Erigeron canadensis HOM05D007201 ORTHO05D009122 8.9e-48 194.9 333 39.3
Cpa.g.sc46.114 Carica papaya HOM05D007201 ORTHO05D009122 2.0e-47 193.7 305 41.6
HanXRQChr10g0309261 Helianthus annuus HOM05D007201 ORTHO05D009122 1.3e-46 191.0 204 51.5
VMungo1127G0228 Vigna mungo HOM05D007201 ORTHO05D009122 1.3e-46 191.0 318 38.7
Medtr4g078160 Medicago truncatula HOM05D007201 ORTHO05D009122 2.8e-46 189.9 298 45.0
ATR0626G320 Amborella trichopoda HOM05D007201 ORTHO05D009122 6.3e-46 188.7 313 41.9
TPR.G28027 Trifolium pratense HOM05D007201 ORTHO05D009122 1.1e-45 188.0 354 39.0
Os06g0704300 Oryza sativa ssp. japonica HOM05D007201 ORTHO05D009122 4.5e-44 182.6 314 37.9
Psat7g169960 Pisum sativum HOM05D007201 ORTHO05D009122 7.8e-44 181.8 340 36.2
SHI24431 Sapria himalayana HOM05D007201 ORTHO05D009122 1.3e-43 181.0 181 51.4
HPP92_017373 Vanilla planifolia HOM05D007201 ORTHO05D009122 1.5e-42 177.6 314 42.0
FAN22G0406 Fragaria x ananassa HOM05D007201 ORTHO05D009122 1.9e-42 177.2 294 40.8
Lalb_Chr19g0140031 Lupinus albus HOM05D007201 ORTHO05D009122 2.5e-42 176.8 311 38.6
CAN.G1591.3 Capsicum annuum HOM05D007201 ORTHO05D009122 4.3e-42 176.0 137 61.3
CDE04G0352 Ceratophyllum demersum HOM05D007201 ORTHO05D009122 7.3e-42 175.3 306 39.5
Carub.0002s2218 Capsella rubella HOM05D007201 ORTHO05D009122 9.5e-42 174.9 320 38.1
SEGI_05170 Sequoiadendron giganteum HOM05D007201 ORTHO05D009122 5.8e-39 165.6 313 38.7
FAN12G1512 Fragaria x ananassa HOM05D007201 ORTHO05D009122 1.7e-38 164.1 197 46.7
THA.LOC104809224 Tarenaya hassleriana HOM05D007201 ORTHO05D009122 6.4e-38 162.2 292 34.9
Thhalv10018711m.g Eutrema salsugineum HOM05D007201 ORTHO05D009122 1.1e-37 161.4 315 35.6
Oeu000954.1 Olea europaea HOM05D007201 ORTHO05D009122 1.4e-37 161.0 248 43.1
A07p40900 Brassica napus HOM05D007201 ORTHO05D009122 5.4e-37 159.1 336 35.4
CANSAT25G2467 Cannabis sativa HOM05D007201 ORTHO05D009122 5.4e-37 159.1 131 58.8
Aqoxy37s001 Aquilegia oxysepala HOM05D007201 ORTHO05D009122 9.2e-37 158.3 206 43.7
C06p49330 Brassica napus HOM05D007201 ORTHO05D009122 9.2e-37 158.3 337 34.7
BraA07t31630Z Brassica rapa HOM05D007201 ORTHO05D009122 1.2e-36 157.9 348 35.1
BcaC08g47362 Brassica carinata HOM05D007201 ORTHO05D009122 2.7e-36 156.8 338 39.6
Duzib168G1263 Durio zibethinus HOM05D007201 ORTHO05D009122 3.9e-35 152.9 260 43.5
BolC6t39968H Brassica oleracea HOM05D007201 ORTHO05D009122 1.1e-34 151.4 361 37.1
AL2G35270 Arabidopsis lyrata HOM05D007201 ORTHO05D009122 2.5e-34 150.2 381 32.5
CARHR068690 Cardamine hirsuta HOM05D007201 ORTHO05D009122 4.7e-33 146.0 348 31.9
AT1G75340 Arabidopsis thaliana HOM05D007201 ORTHO05D009122 1.1e-32 144.8 342 32.2
Aa31LG4G5550 Aethionema arabicum HOM05D007201 ORTHO05D009122 1.8e-32 144.1 341 33.4
FAN17G0247 Fragaria x ananassa HOM05D007201 ORTHO05D009122 2.3e-32 143.7 83 73.5
Sp5g30480 Schrenkiella parvula HOM05D007201 ORTHO05D009122 2.3e-32 143.7 382 31.4
AUR62027959 Chenopodium quinoa HOM05D007201 ORTHO05D009122 2.7e-28 130.2 326 33.4
unitig_8.g3542 Utricularia gibba HOM05D007201 ORTHO05D009122 3.5e-28 129.8 276 36.2
ClCG03G010480 Citrullus lanatus HOM05D007201 ORTHO05D009122 4.3e-26 122.9 225 41.8
Migut.L01609 Erythranthe guttata HOM05D007201 ORTHO05D009122 1.2e-25 121.3 303 33.7
Gohir.A05G407400 Gossypium hirsutum HOM05D007201 ORTHO05D009122 4.7e-25 119.4 242 39.3
Mapoly0005s0044 Marchantia polymorpha HOM05D007201 ORTHO05D009122 2.3e-24 117.1 309 34.0
AagrBONN_evm.TU.Sc2ySwM_117.2509 Anthoceros agrestis HOM05D007201 ORTHO05D009122 4.1e-21 106.3 90 54.4
Pp3c7_12210 Physcomitrium patens HOM05D007201 ORTHO05D009122 7.1e-21 105.5 309 34.0
CSS0006520 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 1.6e-17 94.4 62 71.0
CSS0048863 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 1.6e-17 94.4 62 71.0
CBR_g15955 Chara braunii HOM05D007201 ORTHO05D009122 1.8e-16 90.9 91 51.6
arahy.Tifrunner.gnm1.ann1.IV261E Arachis hypogaea HOM05D000013 ORTHO05D000506 2.9e-06 57.0 102 40.2
Cre06.g254700 Chlamydomonas reinhardtii HOM05D007201 ORTHO05D009122 6.4e-06 55.8 71 39.4


User provided reference genes

Program Settings