Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0036370 Camellia sinensis var. sinensis HOM05D003051 ORTHO05D003932 2.5e-68 261.9 126 100.0
CSS0012370 Camellia sinensis var. sinensis HOM05D003051 ORTHO05D003932 6.6e-29 131.0 127 56.7
CSS0022220 Camellia sinensis var. sinensis HOM05D003051 ORTHO05D003932 3.6e-27 125.2 127 54.3
QL02p004168 Quercus lobata HOM05D003051 ORTHO05D003932 3.6e-27 125.2 127 55.9
COL.COLO4_31149 Corchorus olitorius HOM05D003051 ORTHO05D003932 4.7e-27 124.8 128 54.7
DCAR_009315 Daucus carota HOM05D003051 ORTHO05D003932 8.1e-27 124.0 128 53.1
Duzib235G0371 Durio zibethinus HOM05D003051 ORTHO05D003932 1.4e-26 123.2 127 55.1
Prupe.1G431600 Prunus persica HOM05D003051 ORTHO05D003932 1.4e-26 123.2 127 54.3
Thecc.06G056600 Theobroma cacao HOM05D003051 ORTHO05D003932 1.4e-26 123.2 127 55.1
DCAR_020911 Daucus carota HOM05D003051 ORTHO05D003932 1.8e-26 122.9 127 54.3
Dinv36492 Davidia involucrata HOM05D003051 ORTHO05D003932 1.8e-26 122.9 127 54.3
Dinv37116 Davidia involucrata HOM05D003051 ORTHO05D003932 1.8e-26 122.9 127 54.3
TAR636G0749 Trochodendron aralioides HOM05D003051 ORTHO05D003932 1.8e-26 122.9 127 52.8
GSVIVG01000259001 Vitis vinifera HOM05D003051 ORTHO05D003932 1.8e-26 122.9 127 52.8
Lj7A426G51 Lonicera japonica HOM05D003051 ORTHO05D003932 2.4e-26 122.5 127 55.1
CDE04G1802 Ceratophyllum demersum HOM05D003051 ORTHO05D003932 3.1e-26 122.1 127 52.8
Potri.012G043800 Populus trichocarpa HOM05D003051 ORTHO05D003932 3.1e-26 122.1 127 52.8
CiPaw.09G069100 Carya illinoinensis HOM05D003051 ORTHO05D003932 4.0e-26 121.7 138 51.4
TAR374G0623 Trochodendron aralioides HOM05D003051 ORTHO05D003932 4.0e-26 121.7 127 51.2
TAR374G0874 Trochodendron aralioides HOM05D003051 ORTHO05D003932 4.0e-26 121.7 127 51.2
Atru.chr13.2284 Acer truncatum HOM05D003051 ORTHO05D003932 5.2e-26 121.3 127 53.5
Sp7g34130 Schrenkiella parvula HOM05D003051 ORTHO05D003932 6.8e-26 120.9 127 53.5
Haze_04268 Corylus avellana HOM05D003051 ORTHO05D003932 8.9e-26 120.6 127 52.8
Haze_06246 Corylus avellana HOM05D003051 ORTHO05D003932 8.9e-26 120.6 127 52.8
Sabra15G0028600 Salix brachista HOM05D003051 ORTHO05D003932 8.9e-26 120.6 127 52.0
Lalb_Chr14g0368521 Lupinus albus HOM05D003051 ORTHO05D003932 1.2e-25 120.2 128 52.3
Manes.12G080800 Manihot esculenta HOM05D003051 ORTHO05D003932 1.2e-25 120.2 127 52.0
Sabra12G0030700 Salix brachista HOM05D003051 ORTHO05D003932 1.2e-25 120.2 127 52.0
Lalb_Chr22g0354981 Lupinus albus HOM05D003051 ORTHO05D003932 1.5e-25 119.8 131 53.4
MBI18_g02835_MAGBIO Magnolia biondii HOM05D003051 ORTHO05D003932 1.5e-25 119.8 127 51.2
SGA_v2.0_scaffold83G26334 Striga asiatica HOM05D003051 ORTHO05D003932 1.5e-25 119.8 127 51.2
TPR.G3789 Trifolium pratense HOM05D003051 ORTHO05D003932 1.5e-25 119.8 128 52.3
Lj5g0018018 Lotus japonicus HOM05D003051 ORTHO05D003932 2.0e-25 119.4 128 53.1
Nn3g21075 Nelumbo nucifera HOM05D003051 ORTHO05D003932 2.0e-25 119.4 127 52.8
TWI18G0714 Tripterygium wilfordii HOM05D003051 ORTHO05D003932 2.0e-25 119.4 130 53.1
Cfa006516 Carpinus fangiana HOM05D003051 ORTHO05D003932 2.6e-25 119.0 127 52.0
SGA_v2.0_scaffold28G11959 Striga asiatica HOM05D003051 ORTHO05D003932 2.6e-25 119.0 127 51.2
TWI63G1017 Tripterygium wilfordii HOM05D003051 ORTHO05D003932 2.6e-25 119.0 127 51.2
Actinidia17302 Actinidia chinensis HOM05D003051 ORTHO05D003932 3.4e-25 118.6 127 54.3
CDE03G0158 Ceratophyllum demersum HOM05D003051 ORTHO05D003932 3.4e-25 118.6 127 51.2
Ciclev10025496m.g Citrus clementina HOM05D003051 ORTHO05D003932 3.4e-25 118.6 127 54.3
CAN.G2.17 Capsicum annuum HOM05D003051 ORTHO05D003932 4.4e-25 118.2 127 52.0
Ca_05631_v3 Cicer arietinum L. HOM05D003051 ORTHO05D003932 4.4e-25 118.2 128 51.6
CsaV3_2G026490 Cucumis sativus L. HOM05D003051 ORTHO05D003932 4.4e-25 118.2 127 53.5
Rhsim10G0081500 Rhododendron simsii HOM05D003051 ORTHO05D003932 4.4e-25 118.2 127 53.5
RcHm_v2.0_Chr6g0308441 Rosa chinensis HOM05D003051 ORTHO05D003932 4.4e-25 118.2 127 52.8
AL7G14600 Arabidopsis lyrata HOM05D003051 ORTHO05D003932 5.8e-25 117.9 130 52.3
AT4G36480 Arabidopsis thaliana HOM05D003051 ORTHO05D003932 5.8e-25 117.9 130 52.3
A01p02390 Brassica napus HOM05D003051 ORTHO05D003932 5.8e-25 117.9 130 52.3
BraA01t00227Z Brassica rapa HOM05D003051 ORTHO05D003932 5.8e-25 117.9 130 52.3
Thhalv10025064m.g Eutrema salsugineum HOM05D003051 ORTHO05D003932 5.8e-25 117.9 130 52.3
FvH4_2g33970 Fragaria vesca HOM05D003051 ORTHO05D003932 5.8e-25 117.9 127 52.0
FAN24G2348 Fragaria x ananassa HOM05D003051 ORTHO05D003932 5.8e-25 117.9 127 52.0
Lsat_1_v5_gn_5_96860 Lactuca sativa HOM05D003051 ORTHO05D003932 5.8e-25 117.9 128 51.6
Gohir.A10G159000 Gossypium hirsutum HOM05D003051 ORTHO05D003932 7.6e-25 117.5 127 53.5
Gohir.D10G002000 Gossypium hirsutum HOM05D003051 ORTHO05D003932 7.6e-25 117.5 127 53.5
Gorai.011G002400 Gossypium raimondii HOM05D003051 ORTHO05D003932 7.6e-25 117.5 127 53.5
Lalb_Chr24g0399381 Lupinus albus HOM05D003051 ORTHO05D003932 7.6e-25 117.5 131 51.9
Medtr5g072020 Medicago truncatula HOM05D003051 ORTHO05D003932 7.6e-25 117.5 128 50.8
Cc11_g04320 Coffea canephora HOM05D003051 ORTHO05D003932 9.9e-25 117.1 127 51.2
Gohir.D10G084100 Gossypium hirsutum HOM05D003051 ORTHO05D003932 9.9e-25 117.1 127 53.5
Gorai.011G091200 Gossypium raimondii HOM05D003051 ORTHO05D003932 9.9e-25 117.1 127 53.5
Nitab4.5_0001579g0140 Nicotiana tabacum HOM05D003051 ORTHO05D003932 9.9e-25 117.1 127 51.2
Peaxi162Scf01013g00014 Petunia axillaris HOM05D003051 ORTHO05D003932 9.9e-25 117.1 127 51.2
Sed0025362 Sechium edule HOM05D003051 ORTHO05D003932 9.9e-25 117.1 127 52.8
C07p61710 Brassica napus HOM05D003051 ORTHO05D003932 1.3e-24 116.7 130 52.3
BolC7t46596H Brassica oleracea HOM05D003051 ORTHO05D003932 1.3e-24 116.7 130 52.3
CANSAT78G1339 Cannabis sativa HOM05D003051 ORTHO05D003932 1.3e-24 116.7 131 52.7
ClCG08G016130 Citrullus lanatus HOM05D003051 ORTHO05D003932 1.3e-24 116.7 127 52.8
Duzib160G0152 Durio zibethinus HOM05D003051 ORTHO05D003932 1.3e-24 116.7 127 53.5
Medtr1g018970 Medicago truncatula HOM05D003051 ORTHO05D003932 1.3e-24 116.7 128 51.6
Phvul.001G024100 Phaseolus vulgaris HOM05D003051 ORTHO05D003932 1.3e-24 116.7 128 51.6
Carub.0007s0384 Capsella rubella HOM05D003051 ORTHO05D003932 1.7e-24 116.3 130 50.8
Glyma.14G085100 Glycine max HOM05D003051 ORTHO05D003932 1.7e-24 116.3 128 50.8
Gohir.A10G001900 Gossypium hirsutum HOM05D003051 ORTHO05D003932 1.7e-24 116.3 127 53.5
Aa31LG6G13270 Aethionema arabicum HOM05D003051 ORTHO05D003932 2.2e-24 115.9 130 50.0
CARHR244800 Cardamine hirsuta HOM05D003051 ORTHO05D003932 2.2e-24 115.9 127 51.2
MELO3C010839.2 Cucumis melo HOM05D003051 ORTHO05D003932 2.2e-24 115.9 127 52.8
Glyma.17G239700 Glycine max HOM05D003051 ORTHO05D003932 2.2e-24 115.9 128 50.8
TPR.G18000 Trifolium pratense HOM05D003051 ORTHO05D003932 2.2e-24 115.9 128 50.8
VMungo0647G0828 Vigna mungo HOM05D003051 ORTHO05D003932 2.2e-24 115.9 128 51.6
Cc08_g11730 Coffea canephora HOM05D003051 ORTHO05D003932 2.9e-24 115.5 127 50.4
Nitab4.5_0000167g0090 Nicotiana tabacum HOM05D003051 ORTHO05D003932 2.9e-24 115.5 127 51.2
PSO339G0046 Papaver somniferum HOM05D003051 ORTHO05D003932 2.9e-24 115.5 126 49.2
PSO384G5107 Papaver somniferum HOM05D003051 ORTHO05D003932 2.9e-24 115.5 126 49.2
Potri.015G034600 Populus trichocarpa HOM05D003051 ORTHO05D003932 2.9e-24 115.5 127 50.4
Sc02g0008680 Simmondsia chinensis HOM05D003051 ORTHO05D003932 2.9e-24 115.5 127 52.0
SalBow5G0877 Salvia bowleyana HOM05D003051 ORTHO05D003932 3.8e-24 115.2 127 51.2
Solyc11g019950.2 Solanum lycopersicum HOM05D003051 ORTHO05D003932 3.8e-24 115.2 127 50.4
Sopen11g010060 Solanum pennellii HOM05D003051 ORTHO05D003932 3.8e-24 115.2 127 50.4
vmacro18084 Vaccinium macrocarpon HOM05D003051 ORTHO05D003932 3.8e-24 115.2 130 51.5
Nitab4.5_0000318g0090 Nicotiana tabacum HOM05D003051 ORTHO05D003932 4.9e-24 114.8 127 49.6
Psat2g055640 Pisum sativum HOM05D003051 ORTHO05D003932 4.9e-24 114.8 128 50.0
A03p64250 Brassica napus HOM05D003051 ORTHO05D003932 6.4e-24 114.4 130 51.5
BraA03t15496Z Brassica rapa HOM05D003051 ORTHO05D003932 6.4e-24 114.4 130 51.5
Migut.B00582 Erythranthe guttata HOM05D003051 ORTHO05D003932 6.4e-24 114.4 127 51.2
HanXRQChr05g0150761 Helianthus annuus HOM05D003051 ORTHO05D003932 6.4e-24 114.4 127 52.0
MD15G1077700 Malus domestica HOM05D003051 ORTHO05D003932 6.4e-24 114.4 127 51.2
Nitab4.5_0002021g0050 Nicotiana tabacum HOM05D003051 ORTHO05D003932 6.4e-24 114.4 126 50.0
Peaxi162Scf00699g00636 Petunia axillaris HOM05D003051 ORTHO05D003932 6.4e-24 114.4 127 49.6
EL10Ac1g02184 Beta vulgaris HOM05D003051 ORTHO05D003932 8.4e-24 114.0 127 51.2
ATR0222G029 Amborella trichopoda HOM05D003051 ORTHO05D003932 1.1e-23 113.6 127 51.2
PGSC0003DMG400027619 Solanum tuberosum HOM05D003051 ORTHO05D003932 1.1e-23 113.6 127 49.6
THA.LOC104804240 Tarenaya hassleriana HOM05D003051 ORTHO05D003932 1.1e-23 113.6 130 50.0
CAN.G9.7 Capsicum annuum HOM05D003051 ORTHO05D003932 1.4e-23 113.2 127 48.0
PGR102G2746 Punica granatum HOM05D003051 ORTHO05D003932 1.4e-23 113.2 127 49.6
arahy.Tifrunner.gnm1.ann1.QNA1HW Arachis hypogaea HOM05D003051 ORTHO05D003932 1.9e-23 112.8 128 47.7
Ca_13275_v3 Cicer arietinum L. HOM05D003051 ORTHO05D003932 1.9e-23 112.8 128 48.4
Sopen08g019680 Solanum pennellii HOM05D003051 ORTHO05D003932 1.9e-23 112.8 127 49.6
Aqoxy2G01411 Aquilegia oxysepala HOM05D003051 ORTHO05D003932 2.4e-23 112.5 127 48.8
Medtr3g054030 Medicago truncatula HOM05D003051 ORTHO05D003932 2.4e-23 112.5 128 49.2
Hund22046 Selenicereus undatus HOM05D003051 ORTHO05D003932 2.4e-23 112.5 131 51.1
FAN27G0244 Fragaria x ananassa HOM05D003051 ORTHO05D003932 3.2e-23 112.1 137 48.9
Lsat_1_v5_gn_8_62240 Lactuca sativa HOM05D003051 ORTHO05D003932 3.2e-23 112.1 127 48.8
MD08G1095600 Malus domestica HOM05D003051 ORTHO05D003932 3.2e-23 112.1 127 51.2
arahy.Tifrunner.gnm1.ann1.53VZ2L Arachis hypogaea HOM05D003051 ORTHO05D003932 4.2e-23 111.7 128 46.9
Solyc08g066020.3 Solanum lycopersicum HOM05D003051 ORTHO05D003932 4.2e-23 111.7 127 48.8
FAN15G3751 Fragaria x ananassa HOM05D003051 ORTHO05D003932 5.4e-23 111.3 137 48.2
HanXRQChr05g0134541 Helianthus annuus HOM05D003051 ORTHO05D003932 5.4e-23 111.3 127 51.2
HanXRQChr05g0134611 Helianthus annuus HOM05D003051 ORTHO05D003932 5.4e-23 111.3 127 51.2
THA.LOC104807468 Tarenaya hassleriana HOM05D003051 ORTHO05D003932 5.4e-23 111.3 127 50.4
Ah.01g003510 Amaranthus hybridus HOM05D003051 ORTHO05D003932 2.1e-22 109.4 127 49.6
ECA232G4354 Erigeron canadensis HOM05D003051 ORTHO05D003932 3.5e-22 108.6 127 48.0
RcHm_v2.0_Chr7g0217761 Rosa chinensis HOM05D003051 ORTHO05D003932 3.5e-22 108.6 146 45.9
vmacro08505 Vaccinium macrocarpon HOM05D003051 ORTHO05D003932 3.5e-22 108.6 127 51.2
vmacro22602 Vaccinium macrocarpon HOM05D003051 ORTHO05D003932 3.5e-22 108.6 127 51.2
PGR119G2325 Punica granatum HOM05D003051 ORTHO05D003932 1.0e-21 107.1 127 47.2
Eucgr.D00310 Eucalyptus grandis HOM05D003051 ORTHO05D003932 2.3e-21 105.9 126 50.8
arahy.Tifrunner.gnm1.ann1.11SE8F Arachis hypogaea HOM05D003051 ORTHO05D003932 5.1e-21 104.8 128 49.2
arahy.Tifrunner.gnm1.ann1.GJWA3D Arachis hypogaea HOM05D003051 ORTHO05D003932 5.1e-21 104.8 128 49.2
AUR62041898 Chenopodium quinoa HOM05D003051 ORTHO05D003932 5.1e-21 104.8 127 48.8
AUR62035016 Chenopodium quinoa HOM05D003051 ORTHO05D003932 6.6e-21 104.4 127 48.0
HPP92_014444 Vanilla planifolia HOM05D003051 ORTHO05D003932 2.5e-20 102.4 127 45.7
Zm00001eb010860 Zea mays HOM05D003051 ORTHO05D003932 7.3e-20 100.9 127 46.5
CSS0004660 Camellia sinensis var. sinensis HOM05D003051 ORTHO05D003932 9.6e-20 100.5 134 47.0
Zm00001eb089770 Zea mays HOM05D003051 ORTHO05D003932 9.6e-20 100.5 127 46.5
Zm00001eb398510 Zea mays HOM05D003051 ORTHO05D003932 9.6e-20 100.5 127 46.5
Os03g0252800 Oryza sativa ssp. japonica HOM05D003051 ORTHO05D003932 1.6e-19 99.8 127 45.7
Os02g0806900 Oryza sativa ssp. japonica HOM05D003051 ORTHO05D003932 1.1e-18 97.1 126 44.4
CSS0032175 Camellia sinensis var. sinensis HOM05D003051 ORTHO05D003932 4.0e-18 95.1 105 54.3
Os10g0189600 Oryza sativa ssp. japonica HOM05D003051 ORTHO05D003932 2.6e-17 92.4 126 43.7
Mapoly0025s0004 Marchantia polymorpha HOM05D003051 ORTHO05D003932 4.4e-17 91.7 129 44.2
CBR_g21746 Chara braunii HOM05D003051 ORTHO05D003932 7.6e-17 90.9 127 42.5
Pp3c7_5350 Physcomitrium patens HOM05D003051 ORTHO05D003932 9.9e-17 90.5 126 39.7
SMO361G0305 Selaginella moellendorffii HOM05D003051 ORTHO05D003932 2.4e-15 85.9 127 43.3
AagrBONN_evm.TU.Sc2ySwM_362.1674 Anthoceros agrestis HOM05D003051 ORTHO05D003932 3.2e-15 85.5 128 40.6
Psat0s3398g0040 Pisum sativum HOM05D003051 ORTHO05D003932 3.5e-14 82.0 88 50.0
Psat0s3398g0160 Pisum sativum HOM05D003051 ORTHO05D003116 1.3e-11 73.6 58 63.8
Psat0s3398g0280 Pisum sativum HOM05D003051 ORTHO05D003932 1.3e-11 73.6 58 63.8
Aqoxy4G02974 Aquilegia oxysepala HOM05D003051 ORTHO05D003932 1.6e-11 73.2 58 62.1
Zm00001eb178340 Zea mays HOM05D003051 ORTHO05D003932 1.6e-11 73.2 66 54.5
Hma1.2p1_0343F.1_g131030 Hydrangea macrophylla HOM05D003051 ORTHO05D003932 2.8e-11 72.4 96 47.9
Manes.13G154966 Manihot esculenta HOM05D003051 ORTHO05D003932 2.8e-11 72.4 58 62.1
unitig_62.g23741 Utricularia gibba HOM05D003051 ORTHO05D003932 2.8e-11 72.4 58 62.1
MSTRG.20290 Avicennia marina HOM05D003051 ORTHO05D003932 6.2e-11 71.2 105 43.8
HanXRQChr05g0138611 Helianthus annuus HOM05D003051 ORTHO05D003932 6.2e-11 71.2 59 61.0
Cre03.g146507 Chlamydomonas reinhardtii HOM05D003051 ORTHO05D003932 8.1e-11 70.9 133 34.6
BcaNung05309 Brassica carinata HOM05D003051 ORTHO05D003932 1.1e-10 70.5 82 51.2
Psat0s3398g0120 Pisum sativum HOM05D003051 ORTHO05D003932 1.1e-10 70.5 58 62.1
Zm00001eb311980 Zea mays HOM05D003051 ORTHO05D003932 2.4e-10 69.3 57 59.6
Zm00001eb342140 Zea mays HOM05D003051 ORTHO05D003932 2.4e-10 69.3 57 59.6
Hund25238 Selenicereus undatus HOM05D003051 ORTHO05D003932 3.1e-10 68.9 64 59.4
Cpa.g.sc7.66 Carica papaya HOM05D003051 ORTHO05D003932 6.9e-10 67.8 58 58.6
Haze_27103 Corylus avellana HOM05D003051 ORTHO05D003932 2.0e-09 66.2 132 34.1
Zm00001eb306880 Zea mays HOM05D003051 ORTHO05D003932 2.6e-09 65.9 57 57.9
Gorai.002G090700 Gossypium raimondii HOM05D003051 ORTHO05D003932 3.4e-09 65.5 49 65.3
SEGI_33366 Sequoiadendron giganteum HOM05D003051 ORTHO05D003932 4.5e-09 65.1 59 54.2
Zm00001eb089180 Zea mays HOM05D003051 ORTHO05D003932 4.5e-09 65.1 87 42.5
RcHm_v2.0_Chr1g0353231 Rosa chinensis HOM05D005734 ORTHO05D006990 2.2e-08 62.8 40 70.0
Zm00001eb385270 Zea mays HOM05D003051 ORTHO05D003932 2.2e-08 62.8 87 42.5
PRCOL_00000102 Prasinoderma coloniale HOM05D003051 ORTHO05D003932 2.9e-08 62.4 130 33.1
SEGI_13307 Sequoiadendron giganteum HOM05D003051 ORTHO05D003932 8.4e-08 60.8 59 52.5


User provided reference genes

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