Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034550 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.9e-103 379.4 224 100.0
MSTRG.27950 Avicennia marina HOM05D005935 ORTHO05D007012 9.3e-42 174.5 212 65.6
Dinv24425 Davidia involucrata HOM05D005935 ORTHO05D007012 1.0e-40 171.0 213 64.3
SalBow3G1520 Salvia bowleyana HOM05D005935 ORTHO05D007012 1.0e-40 171.0 211 62.6
Cc02_g34830 Coffea canephora HOM05D005935 ORTHO05D007012 1.7e-40 170.2 211 62.6
ClCG02G015080 Citrullus lanatus HOM05D005935 ORTHO05D007012 5.1e-40 168.7 211 64.0
MELO3C004198.2 Cucumis melo HOM05D005935 ORTHO05D007012 5.1e-40 168.7 211 64.0
Phvul.001G225500 Phaseolus vulgaris HOM05D005935 ORTHO05D007012 5.1e-40 168.7 208 62.0
SGA_v2.0_scaffold81G26126 Striga asiatica HOM05D005935 ORTHO05D007012 5.1e-40 168.7 212 64.2
Atru.chr2.148 Acer truncatum HOM05D005935 ORTHO05D007012 8.7e-40 167.9 213 61.5
Glyma.19G228900 Glycine max HOM05D005935 ORTHO05D007012 8.7e-40 167.9 208 61.5
CsaV3_2G006940 Cucumis sativus L. HOM05D005935 ORTHO05D007012 1.1e-39 167.5 211 63.5
VMungo1383G1193 Vigna mungo HOM05D005935 ORTHO05D007012 1.1e-39 167.5 210 61.0
Lsat_1_v5_gn_5_102820 Lactuca sativa HOM05D005935 ORTHO05D007012 1.5e-39 167.2 207 63.8
Manes.09G175700 Manihot esculenta HOM05D005935 ORTHO05D007012 1.5e-39 167.2 212 63.7
SGA_v2.0_scaffold80G25879 Striga asiatica HOM05D005935 ORTHO05D007012 1.5e-39 167.2 212 62.7
Sed0001365 Sechium edule HOM05D005935 ORTHO05D007012 2.5e-39 166.4 211 62.6
MD04G1195100 Malus domestica HOM05D005935 ORTHO05D007012 3.3e-39 166.0 212 63.7
Haze_04079 Corylus avellana HOM05D005935 ORTHO05D007012 5.6e-39 165.2 204 64.7
Lj1g0021681 Lotus japonicus HOM05D005935 ORTHO05D007012 9.6e-39 164.5 209 60.3
Ah.06g188880 Amaranthus hybridus HOM05D005935 ORTHO05D007012 1.3e-38 164.1 210 61.9
EL10Ac4g09829 Beta vulgaris HOM05D005935 ORTHO05D007012 1.3e-38 164.1 211 63.0
MD12G1207200 Malus domestica HOM05D005935 ORTHO05D007012 1.3e-38 164.1 212 62.7
GSVIVG01031220001 Vitis vinifera HOM05D005935 ORTHO05D007012 2.8e-38 162.9 213 61.5
Prupe.6G314900 Prunus persica HOM05D005935 ORTHO05D007012 3.6e-38 162.5 212 63.7
PGR031G1309 Punica granatum HOM05D005935 ORTHO05D007012 3.6e-38 162.5 210 61.9
arahy.Tifrunner.gnm1.ann1.G5WI6L Arachis hypogaea HOM05D005935 ORTHO05D007012 4.8e-38 162.2 208 60.6
arahy.Tifrunner.gnm1.ann1.H1X696 Arachis hypogaea HOM05D005935 ORTHO05D007012 4.8e-38 162.2 208 60.6
CiPaw.07G028100 Carya illinoinensis HOM05D005935 ORTHO05D007012 6.2e-38 161.8 212 61.8
Glyma.03G231900 Glycine max HOM05D005935 ORTHO05D007012 6.2e-38 161.8 208 61.1
arahy.Tifrunner.gnm1.ann1.7UDZ1N Arachis hypogaea HOM05D005935 ORTHO05D007012 8.1e-38 161.4 207 58.5
Ca_09298_v3 Cicer arietinum L. HOM05D005935 ORTHO05D007012 8.1e-38 161.4 210 60.0
Eucgr.H03282 Eucalyptus grandis HOM05D005935 ORTHO05D007012 8.1e-38 161.4 210 62.4
arahy.Tifrunner.gnm1.ann1.I9BDFC Arachis hypogaea HOM05D005935 ORTHO05D007012 1.1e-37 161.0 207 59.9
Medtr7g112060 Medicago truncatula HOM05D005935 ORTHO05D007012 1.1e-37 161.0 207 59.9
CSS0024691 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.4e-37 160.6 219 52.1
Actinidia16851 Actinidia chinensis HOM05D005935 ORTHO05D007012 1.8e-37 160.2 204 64.7
Hma1.2p1_0008F-1.1_g005750 Hydrangea macrophylla HOM05D005935 ORTHO05D007012 1.8e-37 160.2 212 63.2
TAR362G1094 Trochodendron aralioides HOM05D005935 ORTHO05D007012 3.1e-37 159.5 213 61.0
Migut.N01391 Erythranthe guttata HOM05D005935 ORTHO05D007012 6.9e-37 158.3 213 60.6
RcHm_v2.0_Chr3g0456881 Rosa chinensis HOM05D005935 ORTHO05D007012 1.2e-36 157.5 211 61.6
TAR636G0846 Trochodendron aralioides HOM05D005935 ORTHO05D007012 2.0e-36 156.8 213 62.4
FvH4_6g07240 Fragaria vesca HOM05D005935 ORTHO05D007012 5.8e-36 155.2 210 62.4
Lalb_Chr18g0046051 Lupinus albus HOM05D005935 ORTHO05D007012 9.9e-36 154.5 209 58.9
Cpa.g.sc48.144 Carica papaya HOM05D005935 ORTHO05D007012 1.3e-35 154.1 210 61.9
Os03g0831900 Oryza sativa ssp. japonica HOM05D005935 ORTHO05D007012 2.2e-35 153.3 212 59.0
ATR0767G209 Amborella trichopoda HOM05D005935 ORTHO05D007012 2.9e-35 152.9 209 60.8
Lalb_Chr04g0260471 Lupinus albus HOM05D005935 ORTHO05D007012 2.9e-35 152.9 209 52.6
Peaxi162Scf00673g00126 Petunia axillaris HOM05D005935 ORTHO05D007012 3.8e-35 152.5 219 58.9
Aqoxy2G00839 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 4.9e-35 152.1 213 61.0
Gohir.D08G223300 Gossypium hirsutum HOM05D005935 ORTHO05D007012 4.9e-35 152.1 210 61.0
Gorai.004G237200 Gossypium raimondii HOM05D005935 ORTHO05D007012 4.9e-35 152.1 210 61.0
Psat3g013040 Pisum sativum HOM05D005935 ORTHO05D007012 6.4e-35 151.8 208 57.2
Ciclev10002528m.g Citrus clementina HOM05D005935 ORTHO05D007012 8.4e-35 151.4 212 60.4
FAN05G5324 Fragaria x ananassa HOM05D005935 ORTHO05D007012 1.1e-34 151.0 219 59.8
FAN14G3557 Fragaria x ananassa HOM05D005935 ORTHO05D007012 1.4e-34 150.6 219 59.8
Nn3g21642 Nelumbo nucifera HOM05D005935 ORTHO05D007012 1.4e-34 150.6 210 60.0
CSS0031844 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.9e-34 150.2 226 59.3
CDE11G0767 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 1.9e-34 150.2 209 60.8
Gohir.A08G206600 Gossypium hirsutum HOM05D005935 ORTHO05D007012 1.9e-34 150.2 210 60.5
HanXRQChr10g0299201 Helianthus annuus HOM05D005935 ORTHO05D007012 1.9e-34 150.2 208 62.0
SEGI_34613 Sequoiadendron giganteum HOM05D005935 ORTHO05D007012 1.9e-34 150.2 212 54.2
TWI36G1229 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 2.4e-34 149.8 210 60.5
FAN02G1619 Fragaria x ananassa HOM05D005935 ORTHO05D007012 3.2e-34 149.4 219 59.4
CDE05G0147 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 4.2e-34 149.1 209 60.8
TWI56G1463 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 4.2e-34 149.1 210 61.9
CAN.G1715.16 Capsicum annuum HOM05D005935 ORTHO05D007012 7.1e-34 148.3 209 59.3
Solyc01g100330.3 Solanum lycopersicum HOM05D005935 ORTHO05D007012 7.1e-34 148.3 209 57.9
Sopen01g043840 Solanum pennellii HOM05D005935 ORTHO05D007012 7.1e-34 148.3 209 57.9
unitig_21.g20172 Utricularia gibba HOM05D005935 ORTHO05D007012 9.3e-34 147.9 208 59.6
PGSC0003DMG400002806 Solanum tuberosum HOM05D005935 ORTHO05D007012 1.2e-33 147.5 209 57.9
BraA05t22944Z Brassica rapa HOM05D002110 ORTHO05D007012 1.6e-33 147.1 209 56.0
C05p61480 Brassica napus HOM05D002110 ORTHO05D007012 2.1e-33 146.7 210 57.6
Zm00001eb121760 Zea mays HOM05D005935 ORTHO05D007012 2.1e-33 146.7 210 55.2
CARHR080230 Cardamine hirsuta HOM05D005935 ORTHO05D007012 2.7e-33 146.4 210 58.6
BolC5t34806H Brassica oleracea HOM05D002110 ORTHO05D007012 4.6e-33 145.6 207 54.6
ECA234G4853 Erigeron canadensis HOM05D005935 ORTHO05D007012 4.6e-33 145.6 225 56.9
BcaC05g30089 Brassica carinata HOM05D005935 ORTHO05D007012 6.0e-33 145.2 209 54.5
QL01p019294 Quercus lobata HOM05D005935 ORTHO05D007012 6.0e-33 145.2 215 57.7
TPR.G1633 Trifolium pratense HOM05D005935 ORTHO05D007012 6.0e-33 145.2 206 55.3
Thecc.05G321000 Theobroma cacao HOM05D005935 ORTHO05D007012 7.9e-33 144.8 210 59.0
COL.COLO4_04140 Corchorus olitorius HOM05D005935 ORTHO05D007012 1.0e-32 144.4 210 58.1
Aqoxy4G02482 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 1.3e-32 144.1 213 59.2
vmacro01555 Vaccinium macrocarpon HOM05D005935 ORTHO05D007012 1.3e-32 144.1 239 56.9
Nitab4.5_0000155g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 1.8e-32 143.7 200 58.5
Sp3g04650 Schrenkiella parvula HOM05D005935 ORTHO05D007012 1.8e-32 143.7 209 55.0
THA.LOC104802776 Tarenaya hassleriana HOM05D005935 ORTHO05D007012 1.8e-32 143.7 209 56.9
CANSAT54G1507 Cannabis sativa HOM05D005935 ORTHO05D007012 2.3e-32 143.3 212 59.0
Potri.013G010300 Populus trichocarpa HOM05D005935 ORTHO05D007012 2.3e-32 143.3 228 56.6
FAN09G4449 Fragaria x ananassa HOM05D005935 ORTHO05D007012 3.0e-32 142.9 169 56.2
Nitab4.5_0013342g0020 Nicotiana tabacum HOM05D000001 ORTHO05D004269 5.1e-32 142.1 230 54.3
QL03p018299 Quercus lobata HOM05D005935 ORTHO05D007012 5.1e-32 142.1 212 56.6
Sc09g0002670 Simmondsia chinensis HOM05D005935 ORTHO05D007012 5.1e-32 142.1 212 59.0
CSS0047945 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 6.7e-32 141.7 170 70.0
Carub.0003s0513 Capsella rubella HOM05D005935 ORTHO05D007012 1.1e-31 141.0 209 55.0
AUR62000683 Chenopodium quinoa HOM05D005935 ORTHO05D007012 1.5e-31 140.6 210 56.2
Duzib128G1094 Durio zibethinus HOM05D005935 ORTHO05D007012 1.9e-31 140.2 170 53.5
Aa31LG5G16170 Aethionema arabicum HOM05D005935 ORTHO05D007012 5.6e-31 138.7 218 44.5
AT3G05760 Arabidopsis thaliana HOM05D005935 ORTHO05D007012 1.3e-30 137.5 209 54.5
PSO170G3047 Papaver somniferum HOM05D005935 ORTHO05D007012 1.6e-30 137.1 210 59.0
PSO357G0321 Papaver somniferum HOM05D005935 ORTHO05D007012 1.6e-30 137.1 210 59.0
Mapoly0111s0002 Marchantia polymorpha HOM05D005935 ORTHO05D007012 8.1e-30 134.8 171 50.9
AL3G16500 Arabidopsis lyrata HOM05D005935 ORTHO05D007012 1.1e-29 134.4 209 53.1
BcaC05g29782 Brassica carinata HOM05D005935 ORTHO05D007012 2.4e-29 133.3 209 52.6
HPP92_015241 Vanilla planifolia HOM05D005935 ORTHO05D007012 4.0e-29 132.5 204 60.3
Nitab4.5_0000368g0260 Nicotiana tabacum HOM05D005935 ORTHO05D007012 9.0e-29 131.3 150 52.7
PSO478G5244 Papaver somniferum HOM05D005935 ORTHO05D007012 2.0e-28 130.2 213 56.3
AagrBONN_evm.TU.Sc2ySwM_344.1201 Anthoceros agrestis HOM05D005935 ORTHO05D007012 4.5e-28 129.0 165 48.5
Pp3c4_20180 Physcomitrium patens HOM05D005935 ORTHO05D007012 4.5e-28 129.0 211 54.5
Oeu013219.2 Olea europaea HOM05D005935 ORTHO05D007012 7.6e-28 128.3 216 58.3
DCAR_005416 Daucus carota HOM05D005935 ORTHO05D007012 1.0e-27 127.9 177 62.1
CSS0009551 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.4e-26 124.0 206 58.7
AagrBONN_evm.TU.Sc2ySwM_228.1845 Anthoceros agrestis HOM05D005935 ORTHO05D007012 1.9e-26 123.6 156 47.4
Hund21747 Selenicereus undatus HOM05D005935 ORTHO05D007012 2.5e-26 123.2 200 55.5
AagrBONN_evm.TU.Sc2ySwM_368.1862 Anthoceros agrestis HOM05D005935 ORTHO05D007012 4.2e-26 122.5 149 49.0
Lj5A336T44 Lonicera japonica HOM05D005935 ORTHO05D007012 5.5e-26 122.1 126 57.9
Thhalv10022198m.g Eutrema salsugineum HOM05D005935 ORTHO05D007012 7.1e-26 121.7 214 42.1
AUR62005273 Chenopodium quinoa HOM05D005935 ORTHO05D007012 9.3e-26 121.3 196 54.6
Hund07136 Selenicereus undatus HOM05D005935 ORTHO05D007012 1.8e-24 117.1 303 40.9
Rhsim11G0094200 Rhododendron simsii HOM05D005935 ORTHO05D007012 5.7e-23 112.1 131 53.4
Actinidia35528 Actinidia chinensis HOM05D005935 ORTHO05D007012 9.6e-23 111.3 278 44.2
SMO201G0167 Selaginella moellendorffii HOM05D005935 ORTHO05D007012 8.2e-22 108.2 158 43.0
Pp3c12_7700 Physcomitrium patens HOM05D005935 ORTHO05D007012 7.9e-17 91.7 180 51.7
Sabra13G0008800 Salix brachista HOM05D005935 ORTHO05D007012 8.7e-16 88.2 234 33.8
RcHm_v2.0_Chr7g0179971 Rosa chinensis HOM05D005935 ORTHO05D007012 6.3e-14 82.0 146 40.4
Nitab4.5_0007747g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 5.3e-13 79.0 132 59.8
CBR_g38440 Chara braunii HOM05D005935 ORTHO05D007012 1.1e-10 71.2 91 47.3
Zm00001eb307900 Zea mays HOM05D005935 ORTHO05D007012 3.0e-08 63.2 89 68.5
Zm00001eb180860 Zea mays HOM05D005935 ORTHO05D007012 1.5e-07 60.8 49 69.4
Cre07.g341650 Chlamydomonas reinhardtii HOM05D005935 ORTHO05D007012 7.4e-07 58.5 180 30.0
Zm00001eb114570 Zea mays HOM05D005935 ORTHO05D007012 2.8e-06 56.6 84 69.0


User provided reference genes

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