Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031844 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 2.1e-79 299.3 187 100.0
CSS0024691 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 9.4e-72 273.9 180 81.7
Sed0001365 Sechium edule HOM05D005935 ORTHO05D007012 7.2e-40 167.9 125 76.8
Cc02_g34830 Coffea canephora HOM05D005935 ORTHO05D007012 9.5e-40 167.5 125 73.6
ClCG02G015080 Citrullus lanatus HOM05D005935 ORTHO05D007012 2.8e-39 166.0 125 73.6
MELO3C004198.2 Cucumis melo HOM05D005935 ORTHO05D007012 2.8e-39 166.0 125 73.6
Eucgr.H03282 Eucalyptus grandis HOM05D005935 ORTHO05D007012 2.8e-39 166.0 124 73.4
Manes.09G175700 Manihot esculenta HOM05D005935 ORTHO05D007012 2.8e-39 166.0 125 72.8
CsaV3_2G006940 Cucumis sativus L. HOM05D005935 ORTHO05D007012 6.1e-39 164.9 125 72.8
Lsat_1_v5_gn_5_102820 Lactuca sativa HOM05D005935 ORTHO05D007012 6.1e-39 164.9 120 74.2
GSVIVG01031220001 Vitis vinifera HOM05D005935 ORTHO05D007012 1.4e-38 163.7 127 70.9
Atru.chr2.148 Acer truncatum HOM05D005935 ORTHO05D007012 1.8e-38 163.3 125 72.0
Prupe.6G314900 Prunus persica HOM05D005935 ORTHO05D007012 1.8e-38 163.3 126 71.4
Dinv24425 Davidia involucrata HOM05D005935 ORTHO05D007012 2.3e-38 162.9 127 70.1
MD04G1195100 Malus domestica HOM05D005935 ORTHO05D007012 3.0e-38 162.5 126 70.6
MD12G1207200 Malus domestica HOM05D005935 ORTHO05D007012 3.0e-38 162.5 126 70.6
TAR362G1094 Trochodendron aralioides HOM05D005935 ORTHO05D007012 3.0e-38 162.5 126 70.6
Ah.06g188880 Amaranthus hybridus HOM05D005935 ORTHO05D007012 6.8e-38 161.4 124 71.0
MSTRG.27950 Avicennia marina HOM05D005935 ORTHO05D007012 6.8e-38 161.4 126 70.6
PGR031G1309 Punica granatum HOM05D005935 ORTHO05D007012 6.8e-38 161.4 124 71.0
EL10Ac4g09829 Beta vulgaris HOM05D005935 ORTHO05D007012 8.9e-38 161.0 124 71.0
Haze_04079 Corylus avellana HOM05D005935 ORTHO05D007012 1.2e-37 160.6 120 74.2
Hma1.2p1_0008F-1.1_g005750 Hydrangea macrophylla HOM05D005935 ORTHO05D007012 1.2e-37 160.6 126 70.6
SGA_v2.0_scaffold81G26126 Striga asiatica HOM05D005935 ORTHO05D007012 1.5e-37 160.2 126 69.8
Lj1g0021681 Lotus japonicus HOM05D005935 ORTHO05D007012 2.6e-37 159.5 125 71.2
Rhsim11G0094200 Rhododendron simsii HOM05D005935 ORTHO05D007012 2.6e-37 159.5 126 68.3
SalBow3G1520 Salvia bowleyana HOM05D005935 ORTHO05D007012 2.6e-37 159.5 125 69.6
Aqoxy2G00839 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 3.4e-37 159.1 127 68.5
SGA_v2.0_scaffold80G25879 Striga asiatica HOM05D005935 ORTHO05D007012 3.4e-37 159.1 126 69.0
CiPaw.07G028100 Carya illinoinensis HOM05D005935 ORTHO05D007012 4.4e-37 158.7 126 69.0
Glyma.19G228900 Glycine max HOM05D005935 ORTHO05D007012 4.4e-37 158.7 124 71.0
Phvul.001G225500 Phaseolus vulgaris HOM05D005935 ORTHO05D007012 4.4e-37 158.7 124 71.0
FvH4_6g07240 Fragaria vesca HOM05D005935 ORTHO05D007012 7.5e-37 157.9 124 71.0
unitig_21.g20172 Utricularia gibba HOM05D005935 ORTHO05D007012 7.5e-37 157.9 122 71.3
RcHm_v2.0_Chr3g0456881 Rosa chinensis HOM05D005935 ORTHO05D007012 9.8e-37 157.5 125 69.6
arahy.Tifrunner.gnm1.ann1.I9BDFC Arachis hypogaea HOM05D005935 ORTHO05D007012 1.3e-36 157.1 123 70.7
VMungo1383G1193 Vigna mungo HOM05D005935 ORTHO05D007012 1.3e-36 157.1 124 70.2
Ca_09298_v3 Cicer arietinum L. HOM05D005935 ORTHO05D007012 2.2e-36 156.4 126 69.0
Nitab4.5_0000155g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 2.2e-36 156.4 125 66.4
Aqoxy4G02482 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 2.9e-36 156.0 127 67.7
arahy.Tifrunner.gnm1.ann1.G5WI6L Arachis hypogaea HOM05D005935 ORTHO05D007012 2.9e-36 156.0 124 70.2
arahy.Tifrunner.gnm1.ann1.H1X696 Arachis hypogaea HOM05D005935 ORTHO05D007012 2.9e-36 156.0 124 70.2
arahy.Tifrunner.gnm1.ann1.7UDZ1N Arachis hypogaea HOM05D005935 ORTHO05D007012 3.7e-36 155.6 123 70.7
Migut.N01391 Erythranthe guttata HOM05D005935 ORTHO05D007012 3.7e-36 155.6 126 67.5
Os03g0831900 Oryza sativa ssp. japonica HOM05D005935 ORTHO05D007012 3.7e-36 155.6 123 69.1
TWI36G1229 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 3.7e-36 155.6 123 69.9
CSS0034550 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 4.9e-36 155.2 226 59.3
Gohir.D08G223300 Gossypium hirsutum HOM05D005935 ORTHO05D007012 4.9e-36 155.2 124 69.4
Gorai.004G237200 Gossypium raimondii HOM05D005935 ORTHO05D007012 4.9e-36 155.2 124 69.4
Cpa.g.sc48.144 Carica papaya HOM05D005935 ORTHO05D007012 6.4e-36 154.8 124 70.2
Glyma.03G231900 Glycine max HOM05D005935 ORTHO05D007012 6.4e-36 154.8 124 70.2
HanXRQChr10g0299201 Helianthus annuus HOM05D005935 ORTHO05D007012 8.3e-36 154.5 122 69.7
TAR636G0846 Trochodendron aralioides HOM05D005935 ORTHO05D007012 8.3e-36 154.5 127 67.7
CDE11G0767 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 1.4e-35 153.7 122 69.7
FAN02G1619 Fragaria x ananassa HOM05D005935 ORTHO05D007012 1.4e-35 153.7 133 65.4
FAN05G5324 Fragaria x ananassa HOM05D005935 ORTHO05D007012 1.4e-35 153.7 133 65.4
FAN14G3557 Fragaria x ananassa HOM05D005935 ORTHO05D007012 1.4e-35 153.7 133 65.4
Medtr7g112060 Medicago truncatula HOM05D005935 ORTHO05D007012 1.4e-35 153.7 123 69.1
Ciclev10002528m.g Citrus clementina HOM05D005935 ORTHO05D007012 1.8e-35 153.3 125 68.0
Gohir.A08G206600 Gossypium hirsutum HOM05D005935 ORTHO05D007012 1.8e-35 153.3 124 68.5
Nn3g21642 Nelumbo nucifera HOM05D005935 ORTHO05D007012 1.8e-35 153.3 124 67.7
Nitab4.5_0000368g0260 Nicotiana tabacum HOM05D005935 ORTHO05D007012 1.8e-35 153.3 123 65.9
Thecc.05G321000 Theobroma cacao HOM05D005935 ORTHO05D007012 1.8e-35 153.3 124 68.5
Duzib128G1094 Durio zibethinus HOM05D005935 ORTHO05D007012 2.4e-35 152.9 124 68.5
Actinidia16851 Actinidia chinensis HOM05D005935 ORTHO05D007012 3.2e-35 152.5 118 72.0
FAN09G4449 Fragaria x ananassa HOM05D005935 ORTHO05D007012 3.2e-35 152.5 124 69.4
TWI56G1463 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 3.2e-35 152.5 123 68.3
Nitab4.5_0013342g0020 Nicotiana tabacum HOM05D000001 ORTHO05D004269 5.4e-35 151.8 127 64.6
Zm00001eb121760 Zea mays HOM05D005935 ORTHO05D007012 5.4e-35 151.8 123 67.5
SEGI_34613 Sequoiadendron giganteum HOM05D005935 ORTHO05D007012 7.0e-35 151.4 125 68.0
CDE05G0147 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 1.2e-34 150.6 122 68.0
Lalb_Chr18g0046051 Lupinus albus HOM05D005935 ORTHO05D007012 1.2e-34 150.6 125 67.2
CANSAT54G1507 Cannabis sativa HOM05D005935 ORTHO05D007012 1.6e-34 150.2 126 65.9
BcaC05g30089 Brassica carinata HOM05D005935 ORTHO05D007012 2.0e-34 149.8 123 67.5
C05p61480 Brassica napus HOM05D002110 ORTHO05D007012 2.0e-34 149.8 123 67.5
BraA05t22944Z Brassica rapa HOM05D002110 ORTHO05D007012 2.0e-34 149.8 123 67.5
AUR62000683 Chenopodium quinoa HOM05D005935 ORTHO05D007012 2.0e-34 149.8 124 66.9
COL.COLO4_04140 Corchorus olitorius HOM05D005935 ORTHO05D007012 2.7e-34 149.4 124 66.9
Sc09g0002670 Simmondsia chinensis HOM05D005935 ORTHO05D007012 3.5e-34 149.1 126 65.9
THA.LOC104802776 Tarenaya hassleriana HOM05D005935 ORTHO05D007012 3.5e-34 149.1 123 67.5
QL01p019294 Quercus lobata HOM05D005935 ORTHO05D007012 4.6e-34 148.7 130 65.4
BolC5t34806H Brassica oleracea HOM05D002110 ORTHO05D007012 5.9e-34 148.3 121 67.8
CAN.G1715.16 Capsicum annuum HOM05D005935 ORTHO05D007012 5.9e-34 148.3 123 66.7
CARHR080230 Cardamine hirsuta HOM05D005935 ORTHO05D007012 5.9e-34 148.3 123 67.5
QL03p018299 Quercus lobata HOM05D005935 ORTHO05D007012 5.9e-34 148.3 126 66.7
Hund07136 Selenicereus undatus HOM05D005935 ORTHO05D007012 5.9e-34 148.3 146 60.3
Carub.0003s0513 Capsella rubella HOM05D005935 ORTHO05D007012 7.8e-34 147.9 123 68.3
ECA234G4853 Erigeron canadensis HOM05D005935 ORTHO05D007012 7.8e-34 147.9 123 66.7
Solyc01g100330.3 Solanum lycopersicum HOM05D005935 ORTHO05D007012 7.8e-34 147.9 123 66.7
Sopen01g043840 Solanum pennellii HOM05D005935 ORTHO05D007012 7.8e-34 147.9 123 66.7
Mapoly0111s0002 Marchantia polymorpha HOM05D005935 ORTHO05D007012 1.0e-33 147.5 125 65.6
Psat3g013040 Pisum sativum HOM05D005935 ORTHO05D007012 1.0e-33 147.5 124 66.1
Potri.013G010300 Populus trichocarpa HOM05D005935 ORTHO05D007012 1.0e-33 147.5 126 66.7
vmacro01555 Vaccinium macrocarpon HOM05D005935 ORTHO05D007012 1.0e-33 147.5 168 53.6
PGSC0003DMG400002806 Solanum tuberosum HOM05D005935 ORTHO05D007012 1.3e-33 147.1 123 66.7
Peaxi162Scf00673g00126 Petunia axillaris HOM05D005935 ORTHO05D007012 1.7e-33 146.7 117 68.4
ATR0767G209 Amborella trichopoda HOM05D005935 ORTHO05D007012 2.3e-33 146.4 122 67.2
AUR62005273 Chenopodium quinoa HOM05D005935 ORTHO05D007012 2.3e-33 146.4 121 66.1
Lalb_Chr04g0260471 Lupinus albus HOM05D005935 ORTHO05D007012 2.3e-33 146.4 125 66.4
Sp3g04650 Schrenkiella parvula HOM05D005935 ORTHO05D007012 3.9e-33 145.6 123 66.7
AagrBONN_evm.TU.Sc2ySwM_344.1201 Anthoceros agrestis HOM05D005935 ORTHO05D007012 8.6e-33 144.4 119 64.7
AagrBONN_evm.TU.Sc2ySwM_368.1862 Anthoceros agrestis HOM05D005935 ORTHO05D007012 8.6e-33 144.4 119 64.7
AT3G05760 Arabidopsis thaliana HOM05D005935 ORTHO05D007012 1.9e-32 143.3 123 65.9
PSO170G3047 Papaver somniferum HOM05D005935 ORTHO05D007012 1.9e-32 143.3 123 65.0
PSO357G0321 Papaver somniferum HOM05D005935 ORTHO05D007012 1.9e-32 143.3 123 65.0
PSO478G5244 Papaver somniferum HOM05D005935 ORTHO05D007012 1.9e-32 143.3 126 65.1
AagrBONN_evm.TU.Sc2ySwM_228.1845 Anthoceros agrestis HOM05D005935 ORTHO05D007012 2.5e-32 142.9 119 63.9
Aa31LG5G16170 Aethionema arabicum HOM05D005935 ORTHO05D007012 9.5e-32 141.0 135 61.5
BcaC05g29782 Brassica carinata HOM05D005935 ORTHO05D007012 1.6e-31 140.2 123 65.0
AL3G16500 Arabidopsis lyrata HOM05D005935 ORTHO05D007012 2.1e-31 139.8 123 64.2
Pp3c4_20180 Physcomitrium patens HOM05D005935 ORTHO05D007012 2.8e-31 139.4 123 64.2
Thhalv10022198m.g Eutrema salsugineum HOM05D005935 ORTHO05D007012 4.7e-31 138.7 175 50.9
TPR.G1633 Trifolium pratense HOM05D005935 ORTHO05D007012 1.4e-30 137.1 116 67.2
CSS0009551 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 4.0e-30 135.6 126 63.5
SMO201G0167 Selaginella moellendorffii HOM05D005935 ORTHO05D007012 2.9e-28 129.4 120 59.2
Lj5A336T44 Lonicera japonica HOM05D005935 ORTHO05D007012 1.9e-27 126.7 96 70.8
DCAR_005416 Daucus carota HOM05D005935 ORTHO05D007012 5.4e-27 125.2 91 73.6
HPP92_015241 Vanilla planifolia HOM05D005935 ORTHO05D007012 5.4e-27 125.2 118 64.4
CSS0047945 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 4.6e-26 122.1 84 76.2
Sabra13G0008800 Salix brachista HOM05D005935 ORTHO05D007012 5.6e-24 115.2 202 40.1
Hund21747 Selenicereus undatus HOM05D005935 ORTHO05D007012 1.2e-21 107.5 119 51.3
RcHm_v2.0_Chr7g0179971 Rosa chinensis HOM05D005935 ORTHO05D007012 1.7e-20 103.6 129 48.8
Pp3c12_7700 Physcomitrium patens HOM05D005935 ORTHO05D007012 6.4e-20 101.7 75 74.7
CBR_g38440 Chara braunii HOM05D005935 ORTHO05D007012 5.4e-19 98.6 105 54.3
Oeu013219.2 Olea europaea HOM05D005935 ORTHO05D007012 7.1e-19 98.2 144 49.3
Cre07.g341650 Chlamydomonas reinhardtii HOM05D005935 ORTHO05D007012 2.3e-17 93.2 151 40.4
MCO03G264 Micromonas commoda HOM05D005935 ORTHO05D007012 8.9e-14 81.3 128 42.2
Actinidia35528 Actinidia chinensis HOM05D005935 ORTHO05D007012 1.5e-13 80.5 71 64.8
Nitab4.5_0007747g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 4.9e-12 75.5 38 94.7
CSS0011561 Camellia sinensis var. sinensis HOM05D044005 ORTHO05D110049 6.2e-07 58.5 29 100.0
FAN04G2955 Fragaria x ananassa HOM05D005935 ORTHO05D007012 8.1e-07 58.2 111 40.5


User provided reference genes

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