Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0030842 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 2.2e-117 425.6 209 100.0
Cc02_g11340 Coffea canephora HOM05D003576 ORTHO05D004124 1.7e-53 213.4 136 77.2
QL08p055786 Quercus lobata HOM05D003576 ORTHO05D004124 1.9e-52 209.9 136 75.7
CiPaw.01G272700 Carya illinoinensis HOM05D003576 ORTHO05D004124 2.4e-52 209.5 146 72.6
CSS0018972 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 7.1e-52 208.0 136 75.7
CSS0040774 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 7.1e-52 208.0 136 75.7
Rhsim03G0120500 Rhododendron simsii HOM05D003576 ORTHO05D004124 1.6e-51 206.8 136 75.0
vmacro07071 Vaccinium macrocarpon HOM05D003576 ORTHO05D004124 1.6e-51 206.8 136 75.0
Lj2g0011631 Lotus japonicus HOM05D003576 ORTHO05D004124 2.1e-51 206.5 136 75.0
DCAR_019104 Daucus carota HOM05D003576 ORTHO05D004124 4.6e-51 205.3 136 74.3
Hma1.2p1_0382F.1_g140100 Hydrangea macrophylla HOM05D003576 ORTHO05D004124 1.3e-50 203.8 136 74.3
Actinidia38283 Actinidia chinensis HOM05D003576 ORTHO05D004124 3.0e-50 202.6 136 72.8
Manes.07G100300 Manihot esculenta HOM05D003576 ORTHO05D004124 3.0e-50 202.6 134 74.6
Thecc.10G074000 Theobroma cacao HOM05D003576 ORTHO05D004124 3.0e-50 202.6 136 73.5
Dinv36441 Davidia involucrata HOM05D003576 ORTHO05D004124 5.1e-50 201.8 136 72.8
Medtr6g033535 Medicago truncatula HOM05D003576 ORTHO05D004124 8.6e-50 201.1 136 72.1
Potri.008G039500 Populus trichocarpa HOM05D003576 ORTHO05D004124 8.6e-50 201.1 136 74.3
Sabra10G0172200 Salix brachista HOM05D003576 ORTHO05D004124 8.6e-50 201.1 136 73.5
PGR142G1591 Punica granatum HOM05D003576 ORTHO05D004124 1.1e-49 200.7 135 71.9
Dinv31323 Davidia involucrata HOM05D003576 ORTHO05D004124 1.5e-49 200.3 136 72.1
Lalb_Chr01g0010001 Lupinus albus HOM05D003576 ORTHO05D004124 1.5e-49 200.3 136 71.3
Lalb_Chr03g0035911 Lupinus albus HOM05D003576 ORTHO05D004124 1.5e-49 200.3 136 72.1
MSTRG.374 Avicennia marina HOM05D003576 ORTHO05D004124 2.5e-49 199.5 136 72.1
FAN15G0532 Fragaria x ananassa HOM05D003576 ORTHO05D004124 2.5e-49 199.5 144 68.8
Glyma.02G074100 Glycine max HOM05D003576 ORTHO05D004124 3.3e-49 199.1 136 71.3
Gohir.A10G205700 Gossypium hirsutum HOM05D003576 ORTHO05D004124 3.3e-49 199.1 136 72.1
Gohir.D10G214000 Gossypium hirsutum HOM05D003576 ORTHO05D004124 3.3e-49 199.1 136 72.1
Gorai.011G239400 Gossypium raimondii HOM05D003576 ORTHO05D004124 3.3e-49 199.1 136 72.1
Lj3A882G53 Lonicera japonica HOM05D003576 ORTHO05D004124 3.3e-49 199.1 136 72.1
TWI15G0705 Tripterygium wilfordii HOM05D003576 ORTHO05D004124 3.3e-49 199.1 136 72.8
Ciclev10032124m.g Citrus clementina HOM05D003576 ORTHO05D004124 4.3e-49 198.7 139 71.2
Eucgr.J01085 Eucalyptus grandis HOM05D003576 ORTHO05D004124 4.3e-49 198.7 134 73.9
FvH4_2g18840 Fragaria vesca HOM05D003576 ORTHO05D004124 4.3e-49 198.7 144 68.8
FAN24G3530 Fragaria x ananassa HOM05D003576 ORTHO05D004124 4.3e-49 198.7 144 68.8
Ca_27771_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 5.6e-49 198.4 136 70.6
COL.COLO4_23659 Corchorus olitorius HOM05D003576 ORTHO05D004124 5.6e-49 198.4 134 73.1
Glyma.16G155600 Glycine max HOM05D003576 ORTHO05D004124 5.6e-49 198.4 136 70.6
Prupe.2G213500 Prunus persica HOM05D003576 ORTHO05D004124 5.6e-49 198.4 136 70.6
MD01G1108400 Malus domestica HOM05D003576 ORTHO05D004124 7.3e-49 198.0 136 70.6
Nitab4.5_0009985g0010 Nicotiana tabacum HOM05D003576 ORTHO05D004124 7.3e-49 198.0 136 72.1
Phvul.004G083500 Phaseolus vulgaris HOM05D003576 ORTHO05D004124 7.3e-49 198.0 136 70.6
EL10Ac2g03301 Beta vulgaris HOM05D003576 ORTHO05D004124 9.5e-49 197.6 134 71.6
Nitab4.5_0000476g0030 Nicotiana tabacum HOM05D003576 ORTHO05D004124 1.2e-48 197.2 136 71.3
Cfa021515 Carpinus fangiana HOM05D003576 ORTHO05D004124 1.6e-48 196.8 136 72.8
Potri.010G222800 Populus trichocarpa HOM05D003576 ORTHO05D004124 1.6e-48 196.8 136 72.8
CANSAT56G0320 Cannabis sativa HOM05D003576 ORTHO05D004124 2.1e-48 196.4 136 69.9
Duzib114G0196 Durio zibethinus HOM05D003576 ORTHO05D004124 2.8e-48 196.1 136 71.3
MD07G1174600 Malus domestica HOM05D003576 ORTHO05D004124 2.8e-48 196.1 136 69.9
Sc20g0001840 Simmondsia chinensis HOM05D003576 ORTHO05D004124 2.8e-48 196.1 136 71.3
Atru.chr12.756 Acer truncatum HOM05D003576 ORTHO05D004124 3.6e-48 195.7 139 69.8
Atru.chr12.780 Acer truncatum HOM05D003576 ORTHO05D004124 3.6e-48 195.7 139 69.8
SalBow3G2401 Salvia bowleyana HOM05D003576 ORTHO05D004124 3.6e-48 195.7 162 62.3
Migut.F01985 Erythranthe guttata HOM05D003576 ORTHO05D004124 4.7e-48 195.3 136 70.6
Peaxi162Scf01175g00019 Petunia axillaris HOM05D003576 ORTHO05D004124 6.2e-48 194.9 136 71.3
RcHm_v2.0_Chr6g0284661 Rosa chinensis HOM05D003576 ORTHO05D004124 6.2e-48 194.9 144 68.1
Sabra08G0027100 Salix brachista HOM05D003576 ORTHO05D004124 6.2e-48 194.9 138 72.5
AUR62037754 Chenopodium quinoa HOM05D003576 ORTHO05D004124 8.1e-48 194.5 140 69.3
GSVIVG01016273001 Vitis vinifera HOM05D003576 ORTHO05D004124 2.4e-47 193.0 134 70.9
THA.LOC104827300 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 3.1e-47 192.6 136 68.4
arahy.Tifrunner.gnm1.ann1.33B581 Arachis hypogaea HOM05D003576 ORTHO05D004124 5.2e-47 191.8 136 67.6
arahy.Tifrunner.gnm1.ann1.THE0XD Arachis hypogaea HOM05D003576 ORTHO05D004124 5.2e-47 191.8 136 67.6
AUR62018250 Chenopodium quinoa HOM05D003576 ORTHO05D004124 5.2e-47 191.8 134 69.4
TPR.G36712 Trifolium pratense HOM05D003576 ORTHO05D004124 5.2e-47 191.8 136 69.1
CiPaw.02G173900 Carya illinoinensis HOM05D003576 ORTHO05D004124 6.8e-47 191.4 136 69.9
CAN.G694.86 Capsicum annuum HOM05D003576 ORTHO05D004124 8.9e-47 191.0 136 69.9
Solyc05g056110.3 Solanum lycopersicum HOM05D003576 ORTHO05D004124 8.9e-47 191.0 136 68.4
Sopen05g034520 Solanum pennellii HOM05D003576 ORTHO05D004124 8.9e-47 191.0 136 68.4
ECA232G3526 Erigeron canadensis HOM05D003576 ORTHO05D004124 1.2e-46 190.7 134 70.1
Lsat_1_v5_gn_9_69180 Lactuca sativa HOM05D003576 ORTHO05D004124 1.2e-46 190.7 134 70.1
HanXRQChr15g0496951 Helianthus annuus HOM05D003576 ORTHO05D004124 4.4e-46 188.7 134 70.1
ClCG05G021030 Citrullus lanatus HOM05D003576 ORTHO05D004124 9.9e-46 187.6 134 68.7
MELO3C012428.2 Cucumis melo HOM05D003576 ORTHO05D004124 9.9e-46 187.6 134 68.7
CsaV3_5G036280 Cucumis sativus L. HOM05D003576 ORTHO05D004124 9.9e-46 187.6 134 68.7
AL6G24180 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 1.3e-45 187.2 136 66.2
Actinidia06773 Actinidia chinensis HOM05D003576 ORTHO05D004124 2.2e-45 186.4 124 73.4
ClCG08G007510 Citrullus lanatus HOM05D003576 ORTHO05D004124 2.2e-45 186.4 136 66.2
ECA238G1405 Erigeron canadensis HOM05D003576 ORTHO05D004124 3.8e-45 185.7 134 67.2
Sed0008938 Sechium edule HOM05D003576 ORTHO05D004124 4.9e-45 185.3 136 66.2
Carub.0006s1173 Capsella rubella HOM05D003576 ORTHO05D004124 1.4e-44 183.7 136 65.4
CARHR199870 Cardamine hirsuta HOM05D003576 ORTHO05D004124 1.4e-44 183.7 136 65.4
CsaV3_6G036430 Cucumis sativus L. HOM05D003576 ORTHO05D004124 2.4e-44 183.0 136 65.4
Migut.F01761 Erythranthe guttata HOM05D003576 ORTHO05D004124 3.2e-44 182.6 136 66.2
AT5G13570 Arabidopsis thaliana HOM05D003576 ORTHO05D004124 1.6e-43 180.3 136 63.2
BcaB01g05348 Brassica carinata HOM05D003576 ORTHO05D004124 2.7e-43 179.5 136 64.7
Sed0006763 Sechium edule HOM05D003576 ORTHO05D004124 2.7e-43 179.5 136 63.2
BcaNung01897 Brassica carinata HOM05D003576 ORTHO05D004124 3.5e-43 179.1 136 64.7
BcaNung06333 Brassica carinata HOM05D003576 ORTHO05D004124 4.6e-43 178.7 134 65.7
A02p02030 Brassica napus HOM05D003576 ORTHO05D004124 4.6e-43 178.7 134 65.7
C02p06240 Brassica napus HOM05D003576 ORTHO05D004124 4.6e-43 178.7 134 65.7
BolC2t06566H Brassica oleracea HOM05D003576 ORTHO05D004124 4.6e-43 178.7 134 65.7
Thhalv10014094m.g Eutrema salsugineum HOM05D003576 ORTHO05D004124 4.6e-43 178.7 136 64.0
Sp6g30460 Schrenkiella parvula HOM05D003576 ORTHO05D004124 4.6e-43 178.7 136 64.7
Nn2g13102 Nelumbo nucifera HOM05D003576 ORTHO05D004124 7.8e-43 177.9 137 63.5
SHI19520 Sapria himalayana HOM05D003576 ORTHO05D004124 1.0e-42 177.6 134 64.2
BcaC04g19105 Brassica carinata HOM05D003576 ORTHO05D004124 2.3e-42 176.4 136 64.0
CDE04G0074 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 2.3e-42 176.4 137 63.5
BcaC04g19106 Brassica carinata HOM05D003576 ORTHO05D004124 3.0e-42 176.0 136 63.2
BolC9t59197H Brassica oleracea HOM05D003576 ORTHO05D004124 3.0e-42 176.0 136 63.2
unitig_699.g19224 Utricularia gibba HOM05D003576 ORTHO05D004124 5.1e-42 175.3 130 67.7
SGA_v2.0_scaffold100G29594 Striga asiatica HOM05D003576 ORTHO05D004124 6.6e-42 174.9 142 66.2
C09p63530 Brassica napus HOM05D003576 ORTHO05D004124 1.1e-41 174.1 136 62.5
TAR633G2490 Trochodendron aralioides HOM05D003576 ORTHO05D004124 1.9e-41 173.3 137 65.0
A10p24700 Brassica napus HOM05D003576 ORTHO05D004124 2.5e-41 172.9 136 61.8
BraA10t44533Z Brassica rapa HOM05D003576 ORTHO05D004124 2.5e-41 172.9 136 61.8
THA.LOC104809882 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 3.3e-41 172.6 136 62.5
Zm00001eb273430 Zea mays HOM05D003576 ORTHO05D004124 2.1e-40 169.9 136 62.5
BcaNung01144 Brassica carinata HOM05D003576 ORTHO05D004124 4.8e-40 168.7 134 64.2
PSO063G6153 Papaver somniferum HOM05D003576 ORTHO05D004124 1.1e-39 167.5 137 61.3
Aa31LG11G7770 Aethionema arabicum HOM05D003576 ORTHO05D004124 1.4e-39 167.2 177 52.0
Aqoxy1G02388 Aquilegia oxysepala HOM05D003576 ORTHO05D004124 3.1e-39 166.0 135 63.0
HPP92_020748 Vanilla planifolia HOM05D003576 ORTHO05D004124 5.3e-39 165.2 136 62.5
PSO339G2752 Papaver somniferum HOM05D003576 ORTHO05D004124 2.0e-38 163.3 135 58.5
PSO384G2156 Papaver somniferum HOM05D003576 ORTHO05D004124 2.6e-38 162.9 135 57.8
TAR636G0323 Trochodendron aralioides HOM05D003576 ORTHO05D004124 4.4e-38 162.2 137 60.6
PSO339G5183 Papaver somniferum HOM05D003576 ORTHO05D004124 9.9e-38 161.0 150 55.3
Os02g0805900 Oryza sativa ssp. japonica HOM05D003576 ORTHO05D004124 1.7e-37 160.2 135 60.7
PGR044G0669 Punica granatum HOM05D003576 ORTHO05D004124 2.9e-37 159.5 134 59.0
ATR0048G008 Amborella trichopoda HOM05D003576 ORTHO05D004124 1.4e-36 157.1 134 61.2
CSS0009257 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 7.1e-36 154.8 81 92.6
CDE03G0119 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 9.3e-36 154.5 131 58.8
MELO3C019797.2 Cucumis melo HOM05D003576 ORTHO05D004124 1.3e-34 150.6 83 83.1
BcaB06g27487 Brassica carinata HOM05D003576 ORTHO05D004124 1.7e-34 150.2 137 59.9
BcaC04g19104 Brassica carinata HOM05D003576 ORTHO05D004124 6.6e-34 148.3 126 61.1
Mapoly0154s0022 Marchantia polymorpha HOM05D003576 ORTHO05D004124 1.1e-33 147.5 137 56.2
C04p47100 Brassica napus HOM05D003576 ORTHO05D004124 1.5e-33 147.1 136 58.8
BolC4t26304H Brassica oleracea HOM05D003576 ORTHO05D004124 1.5e-33 147.1 136 58.8
A04p13320 Brassica napus HOM05D003576 ORTHO05D004124 3.3e-33 146.0 136 58.1
BraA04t16990Z Brassica rapa HOM05D003576 ORTHO05D004124 9.6e-33 144.4 136 57.4
SMO356G0089 Selaginella moellendorffii HOM05D003576 ORTHO05D004124 1.3e-32 144.1 136 52.9
Ca_07562_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 1.6e-32 143.7 116 63.8
Oeu017646.1 Olea europaea HOM05D003576 ORTHO05D004124 3.6e-32 142.5 105 69.5
Haze_16891 Corylus avellana HOM05D003576 ORTHO05D004124 1.1e-31 141.0 106 69.8
Pp3c10_5620 Physcomitrium patens HOM05D003576 ORTHO05D004124 1.8e-31 140.2 138 54.3
A04p13360 Brassica napus HOM05D003576 ORTHO05D004124 4.0e-31 139.0 158 50.0
Pp3c2_16830 Physcomitrium patens HOM05D003576 ORTHO05D004124 4.0e-31 139.0 156 48.1
BraA04t16996Z Brassica rapa HOM05D003576 ORTHO05D004124 5.3e-31 138.7 158 50.0
Sp7g03020 Schrenkiella parvula HOM05D003576 ORTHO05D004124 5.3e-31 138.7 138 55.1
AagrBONN_evm.TU.Sc2ySwM_228.4941 Anthoceros agrestis HOM05D003576 ORTHO05D004124 6.9e-31 138.3 145 49.7
Pp3c1_22690 Physcomitrium patens HOM05D003576 ORTHO05D004124 6.9e-31 138.3 138 51.4
A04p13340 Brassica napus HOM05D003576 ORTHO05D004124 1.2e-30 137.5 158 50.0
A04p13380 Brassica napus HOM05D003576 ORTHO05D004124 1.2e-30 137.5 158 50.0
A04p13410 Brassica napus HOM05D003576 ORTHO05D004124 1.2e-30 137.5 158 50.0
C04p47110 Brassica napus HOM05D003576 ORTHO05D004124 2.0e-30 136.7 152 52.0
BolC4t26305H Brassica oleracea HOM05D003576 ORTHO05D004124 2.0e-30 136.7 152 52.0
BolC4t26310H Brassica oleracea HOM05D003576 ORTHO05D004124 2.0e-30 136.7 152 52.0
BraA04t16993Z Brassica rapa HOM05D003576 ORTHO05D004124 2.6e-30 136.3 138 53.6
BraA04t16999Z Brassica rapa HOM05D003576 ORTHO05D004124 2.6e-30 136.3 138 53.6
Psat1g098680 Pisum sativum HOM05D003576 ORTHO05D004124 2.6e-30 136.3 107 63.6
BcaB06g27496 Brassica carinata HOM05D003576 ORTHO05D004124 3.4e-30 136.0 139 55.4
Ah.16g106400 Amaranthus hybridus HOM05D003576 ORTHO05D004124 7.6e-30 134.8 104 68.3
BraA04t16991Z Brassica rapa HOM05D003576 ORTHO05D004124 9.9e-30 134.4 138 52.9
BraA04t16997Z Brassica rapa HOM05D003576 ORTHO05D004124 8.4e-29 131.3 140 52.9
C03p07100 Brassica napus HOM05D002836 ORTHO05D003107 2.4e-28 129.8 115 56.5
Cpa.g.sc53.83 Carica papaya HOM05D003576 ORTHO05D004124 3.5e-27 125.9 104 62.5
CBR_g39890 Chara braunii HOM05D003576 ORTHO05D004124 1.0e-26 124.4 138 47.1
BcaB06g27489 Brassica carinata HOM05D003576 ORTHO05D004124 1.3e-26 124.0 143 51.0
CBR_g38931 Chara braunii HOM05D003576 ORTHO05D004124 2.3e-26 123.2 138 46.4
Ah.10g032640 Amaranthus hybridus HOM05D003576 ORTHO05D004124 8.7e-26 121.3 104 60.6
BolC3t13209H Brassica oleracea HOM05D003576 ORTHO05D004124 9.6e-25 117.9 106 57.5
Sp7g01550 Schrenkiella parvula HOM05D003576 ORTHO05D004124 3.7e-24 115.9 130 49.2
BcaB06g27493 Brassica carinata HOM05D003576 ORTHO05D004124 6.5e-21 105.1 139 47.5
Sp3g29060 Schrenkiella parvula HOM05D003576 ORTHO05D004124 6.0e-19 98.6 138 42.8
AL4G23990 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 2.3e-18 96.7 83 55.4
CSS0032612 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 5.1e-18 95.5 51 94.1
CSS0050114 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 5.1e-18 95.5 51 94.1
CSS0046774 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.1e-17 94.4 51 92.2
BcaB06g27491 Brassica carinata HOM05D003576 ORTHO05D004124 1.9e-17 93.6 70 67.1
CSS0033760 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 3.3e-17 92.8 51 90.2
Cfa023847 Carpinus fangiana HOM05D003576 ORTHO05D004124 2.8e-16 89.7 141 41.1
PRCOL_00003742 Prasinoderma coloniale HOM05D003576 ORTHO05D004124 2.4e-15 86.7 148 33.8
SEGI_06233 Sequoiadendron giganteum HOM05D003576 ORTHO05D004124 1.4e-12 77.4 72 52.8
MCO14G142 Micromonas commoda HOM05D003576 ORTHO05D004124 3.2e-12 76.3 89 46.1
CDE03G0152 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 7.1e-12 75.1 77 51.9
Cre07.g344850 Chlamydomonas reinhardtii HOM05D003576 ORTHO05D004124 1.0e-10 71.2 82 46.3
Sp7g03350 Schrenkiella parvula HOM05D003576 ORTHO05D004124 1.0e-10 71.2 97 44.3
FAN15G1487 Fragaria x ananassa HOM05D003576 ORTHO05D004124 5.1e-10 68.9 31 90.3
Zm00001eb305720 Zea mays HOM05D003576 ORTHO05D004124 8.2e-08 61.6 32 84.4
Zm00001eb290030 Zea mays HOM05D003576 ORTHO05D004124 3.1e-07 59.7 31 83.9
CDE03G0459 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 2.0e-06 57.0 37 67.6


User provided reference genes

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