Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028981 Camellia sinensis var. sinensis HOM05D007027 ORTHO05D008765 1.2e-225 786.2 387 100.0
Dinv07482 Davidia involucrata HOM05D007027 ORTHO05D008765 2.4e-170 602.4 381 78.2
Actinidia00176 Actinidia chinensis HOM05D007027 ORTHO05D008765 1.5e-161 573.2 347 82.4
CiPaw.05G004800 Carya illinoinensis HOM05D007027 ORTHO05D008765 7.7e-161 570.9 372 76.9
PGSC0003DMG400024892 Solanum tuberosum HOM05D007027 ORTHO05D008765 6.1e-158 561.2 384 72.4
GSVIVG01023249001 Vitis vinifera HOM05D007027 ORTHO05D008765 6.1e-158 561.2 371 74.1
Solyc01g103560.3 Solanum lycopersicum HOM05D007027 ORTHO05D008765 1.1e-156 557.0 384 71.9
Cfa004487 Carpinus fangiana HOM05D007027 ORTHO05D008765 4.8e-155 551.6 377 73.2
Sopen01g045910 Solanum pennellii HOM05D007027 ORTHO05D008765 4.8e-155 551.6 384 71.1
Rhsim11G0122600 Rhododendron simsii HOM05D007027 ORTHO05D008765 6.3e-155 551.2 419 71.6
CAN.G855.3 Capsicum annuum HOM05D007027 ORTHO05D008765 8.2e-155 550.8 381 71.9
Nitab4.5_0004106g0030 Nicotiana tabacum HOM05D007027 ORTHO05D008765 3.1e-154 548.9 387 71.3
vmacro01711 Vaccinium macrocarpon HOM05D007027 ORTHO05D008765 3.5e-153 545.4 439 68.3
Nitab4.5_0000787g0210 Nicotiana tabacum HOM05D007027 ORTHO05D008765 5.9e-153 544.7 385 70.9
Duzib132G0056 Durio zibethinus HOM05D007027 ORTHO05D008765 5.0e-152 541.6 372 73.1
Gohir.D01G174800 Gossypium hirsutum HOM05D007027 ORTHO05D008765 2.5e-151 539.3 356 75.8
QL02p100436 Quercus lobata HOM05D007027 ORTHO05D008765 3.2e-151 538.9 374 73.3
Gorai.002G216900 Gossypium raimondii HOM05D007027 ORTHO05D008765 5.5e-151 538.1 356 75.8
CiPaw.06G173600 Carya illinoinensis HOM05D007027 ORTHO05D008765 1.2e-150 537.0 374 73.3
Gohir.A01G183800 Gossypium hirsutum HOM05D007027 ORTHO05D008765 3.0e-149 532.3 341 78.0
Cc02_g23170 Coffea canephora HOM05D007027 ORTHO05D008765 1.7e-147 526.6 382 70.2
Manes.07G024000 Manihot esculenta HOM05D007027 ORTHO05D008765 1.7e-147 526.6 381 70.3
MD15G1435400 Malus domestica HOM05D007027 ORTHO05D008765 6.3e-147 524.6 376 70.7
Oeu064602.3 Olea europaea HOM05D007027 ORTHO05D008765 9.1e-146 520.8 426 64.8
Cpa.g.sc113.45 Carica papaya HOM05D007027 ORTHO05D008765 2.0e-145 519.6 331 77.9
TAR381G1092 Trochodendron aralioides HOM05D007027 ORTHO05D008765 2.0e-145 519.6 370 70.8
Migut.B00775 Erythranthe guttata HOM05D007027 ORTHO05D008765 2.7e-145 519.2 372 69.1
SGA_v2.0_scaffold304G47919 Striga asiatica HOM05D007027 ORTHO05D008765 2.7e-145 519.2 393 67.4
MD08G1241400 Malus domestica HOM05D007027 ORTHO05D008765 4.5e-145 518.5 376 70.2
Haze_10044 Corylus avellana HOM05D007027 ORTHO05D008765 1.0e-144 517.3 477 58.9
Glyma.12G167000 Glycine max HOM05D007027 ORTHO05D008765 1.0e-144 517.3 374 71.4
FvH4_3g33250 Fragaria vesca HOM05D007027 ORTHO05D008765 1.7e-144 516.5 372 69.4
MBI03_g18680_MAGBIO Magnolia biondii HOM05D007027 ORTHO05D008765 3.8e-144 515.4 388 68.6
PGR142G1179 Punica granatum HOM05D007027 ORTHO05D008765 5.0e-144 515.0 371 70.4
SalBow7G1849 Salvia bowleyana HOM05D007027 ORTHO05D008765 1.5e-143 513.5 374 70.9
Nn5g27423 Nelumbo nucifera HOM05D007027 ORTHO05D008765 1.9e-143 513.1 366 70.8
CANSAT54G3047 Cannabis sativa HOM05D007027 ORTHO05D008765 4.2e-143 511.9 382 66.5
THA.LOC104816809 Tarenaya hassleriana HOM05D007027 ORTHO05D008765 4.2e-143 511.9 379 68.3
RcHm_v2.0_Chr5g0060601 Rosa chinensis HOM05D007027 ORTHO05D008765 1.6e-142 510.0 372 69.6
FAN16G3401 Fragaria x ananassa HOM05D007027 ORTHO05D008765 2.7e-142 509.2 372 68.5
FAN25G1584 Fragaria x ananassa HOM05D007027 ORTHO05D008765 4.7e-142 508.4 372 68.3
Ca_00043_v3 Cicer arietinum L. HOM05D007027 ORTHO05D008765 6.1e-142 508.1 340 74.7
BcaC05g24848 Brassica carinata HOM05D007027 ORTHO05D008765 8.0e-142 507.7 372 68.8
Glyma.16G003100 Glycine max HOM05D007027 ORTHO05D008765 4.0e-141 505.4 376 70.7
Potri.003G008500 Populus trichocarpa HOM05D007027 ORTHO05D008765 5.2e-141 505.0 353 71.7
Thhalv10007981m.g Eutrema salsugineum HOM05D007027 ORTHO05D008765 2.0e-140 503.1 383 67.6
FAN11G0675 Fragaria x ananassa HOM05D007027 ORTHO05D008765 9.8e-140 500.7 408 63.5
DCAR_006671 Daucus carota HOM05D007027 ORTHO05D008765 1.7e-139 500.0 381 66.7
Lj5C266T4 Lonicera japonica HOM05D007027 ORTHO05D008765 3.7e-139 498.8 386 66.8
Atru.chr6.497 Acer truncatum HOM05D007027 ORTHO05D008765 4.8e-139 498.4 373 69.2
CsaV3_5G029790 Cucumis sativus L. HOM05D007027 ORTHO05D008765 1.1e-138 497.3 373 67.8
HanXRQChr09g0249131 Helianthus annuus HOM05D007027 ORTHO05D008765 2.4e-138 496.1 391 66.2
Aqoxy3G00475 Aquilegia oxysepala HOM05D007027 ORTHO05D008765 3.1e-138 495.7 330 75.2
VMungo0540G1081 Vigna mungo HOM05D007027 ORTHO05D008765 5.4e-138 495.0 369 69.1
MELO3C011820.2 Cucumis melo HOM05D007027 ORTHO05D008765 9.1e-138 494.2 390 65.4
CARHR009790 Cardamine hirsuta HOM05D007027 ORTHO05D008765 1.2e-137 493.8 378 68.0
TPR.G2122 Trifolium pratense HOM05D007027 ORTHO05D008765 1.2e-137 493.8 371 67.7
Psat1g222360 Pisum sativum HOM05D007027 ORTHO05D008765 2.7e-137 492.7 370 68.1
Lalb_Chr20g0123691 Lupinus albus HOM05D007027 ORTHO05D008765 5.9e-137 491.5 354 69.8
C08p49260 Brassica napus HOM05D007027 ORTHO05D008765 2.3e-136 489.6 327 73.1
TWI23G0132 Tripterygium wilfordii HOM05D007027 ORTHO05D008765 2.3e-136 489.6 385 67.8
AT1G09800 Arabidopsis thaliana HOM05D007027 ORTHO05D008765 2.9e-136 489.2 376 66.2
BolC8t52461H Brassica oleracea HOM05D007027 ORTHO05D008765 5.0e-136 488.4 327 72.8
Prupe.1G579000 Prunus persica HOM05D007027 ORTHO05D008765 8.6e-136 487.6 375 68.0
Carub.0001s0916 Capsella rubella HOM05D007027 ORTHO05D008765 3.3e-135 485.7 377 65.8
BraA06t23859Z Brassica rapa HOM05D007027 ORTHO05D008765 4.2e-135 485.3 343 68.2
Medtr2g005830 Medicago truncatula HOM05D007027 ORTHO05D008765 7.2e-135 484.6 371 66.6
A06p06480 Brassica napus HOM05D007027 ORTHO05D008765 2.1e-134 483.0 349 67.9
BolC5t29540H Brassica oleracea HOM05D007027 ORTHO05D008765 3.6e-134 482.3 360 68.1
Sabra03G0004200 Salix brachista HOM05D007027 ORTHO05D008765 4.7e-134 481.9 383 65.3
A09p65310 Brassica napus HOM05D007027 ORTHO05D008765 6.1e-134 481.5 327 72.2
Thecc.02G018500 Theobroma cacao HOM05D007027 ORTHO05D008765 2.3e-133 479.6 378 67.2
Sp1g08410 Schrenkiella parvula HOM05D007027 ORTHO05D008765 5.2e-133 478.4 382 63.9
C05p07890 Brassica napus HOM05D007027 ORTHO05D008765 8.9e-133 477.6 358 67.9
AL1G20380 Arabidopsis lyrata HOM05D007027 ORTHO05D008765 5.7e-132 474.9 407 61.4
arahy.Tifrunner.gnm1.ann1.BAUB6M Arachis hypogaea HOM05D007027 ORTHO05D008765 3.7e-131 472.2 323 73.1
Hund15459 Selenicereus undatus HOM05D007027 ORTHO05D008765 1.1e-130 470.7 384 63.5
EL10Ac6g14111 Beta vulgaris HOM05D007027 ORTHO05D008765 1.8e-130 469.9 368 67.1
arahy.Tifrunner.gnm1.ann1.3G44QY Arachis hypogaea HOM05D007027 ORTHO05D008765 2.4e-130 469.5 323 72.8
ECA233G3768 Erigeron canadensis HOM05D007027 ORTHO05D008765 2.7e-129 466.1 364 65.7
ATR1136G089 Amborella trichopoda HOM05D007027 ORTHO05D008765 2.9e-128 462.6 367 65.1
COL.COLO4_17723 Corchorus olitorius HOM05D007027 ORTHO05D008765 2.9e-128 462.6 331 71.6
Lj6g0019688 Lotus japonicus HOM05D007027 ORTHO05D008765 1.1e-127 460.7 367 65.1
Lj6g0023928 Lotus japonicus HOM05D007027 ORTHO05D008765 1.1e-127 460.7 367 65.1
unitig_699.g19848 Utricularia gibba HOM05D007027 ORTHO05D008765 1.5e-127 460.3 381 62.7
FAN21G1550 Fragaria x ananassa HOM05D007027 ORTHO05D008765 1.9e-127 459.9 372 64.2
Os12g0194800 Oryza sativa ssp. japonica HOM05D007027 ORTHO05D008765 1.9e-127 459.9 389 62.0
Ciclev10001491m.g Citrus clementina HOM05D007027 ORTHO05D008765 4.3e-127 458.8 333 72.1
PSO017G0894 Papaver somniferum HOM05D007027 ORTHO05D008765 1.6e-126 456.8 331 67.7
PSO170G1275 Papaver somniferum HOM05D007027 ORTHO05D008765 8.0e-126 454.5 331 67.4
BcaC07g41859 Brassica carinata HOM05D007027 ORTHO05D008765 4.1e-122 442.2 335 67.2
Zm00001eb138750 Zea mays HOM05D007027 ORTHO05D008765 1.6e-121 440.3 361 62.6
Eucgr.I02764 Eucalyptus grandis HOM05D007027 ORTHO05D008765 1.4e-114 417.2 333 63.4
AUR62043952 Chenopodium quinoa HOM05D007027 ORTHO05D008765 3.0e-112 409.5 323 66.3
Sed0027668 Sechium edule HOM05D007027 ORTHO05D008765 1.7e-104 383.6 322 63.0
ClCG11G013270 Citrullus lanatus HOM05D007027 ORTHO05D008765 1.5e-103 380.6 382 56.3
Pp3c1_13020 Physcomitrium patens HOM05D007027 ORTHO05D008765 4.3e-103 379.0 336 57.7
Mapoly0016s0042 Marchantia polymorpha HOM05D007027 ORTHO05D008765 1.5e-95 354.0 345 53.9
Phvul.006G218900 Phaseolus vulgaris HOM05D007027 ORTHO05D008765 3.6e-94 349.4 257 67.7
HPP92_013442 Vanilla planifolia HOM05D007027 ORTHO05D008765 1.7e-91 340.5 286 62.9
SMO118G0354 Selaginella moellendorffii HOM05D007027 ORTHO05D008765 5.4e-90 335.5 324 52.8
Sc07g0005100 Simmondsia chinensis HOM05D007027 ORTHO05D008765 1.6e-89 334.0 278 63.7
CBR_g30061 Chara braunii HOM05D007027 ORTHO05D008765 1.8e-80 303.9 457 41.1
HPP92_013441 Vanilla planifolia HOM05D007027 ORTHO05D008765 6.7e-80 302.0 185 77.3
Aa31LG1G5150 Aethionema arabicum HOM05D007027 ORTHO05D008765 3.5e-73 279.6 233 60.9
CDE05G2927 Ceratophyllum demersum HOM05D007027 ORTHO05D008765 2.7e-65 253.4 184 67.9
AUR62028254 Chenopodium quinoa HOM05D007027 ORTHO05D008765 4.6e-65 252.7 198 65.2
Lsat_1_v5_gn_9_120240 Lactuca sativa HOM05D007027 ORTHO05D008765 2.8e-62 243.4 181 69.1
Peaxi162Scf00011g01224 Petunia axillaris HOM05D007027 ORTHO05D008765 1.4e-58 231.1 405 40.5
MCO02G420 Micromonas commoda HOM05D007027 ORTHO05D008765 7.4e-55 218.8 420 36.2
Migut.B00774 Erythranthe guttata HOM05D007027 ORTHO05D008765 2.7e-49 200.3 141 69.5
RcHm_v2.0_Chr3g0481081 Rosa chinensis HOM05D007027 ORTHO05D008765 3.0e-32 143.7 79 82.3
CDE05G0566 Ceratophyllum demersum HOM05D007027 ORTHO05D008765 5.2e-32 142.9 141 56.0
SMO361G0559 Selaginella moellendorffii HOM05D006708 ORTHO05D008321 2.6e-23 114.0 336 28.0
Pp3c21_5420 Physcomitrium patens HOM05D006708 ORTHO05D008321 9.1e-21 105.5 345 27.0
Mapoly0209s0002 Marchantia polymorpha HOM05D006708 ORTHO05D008321 2.0e-20 104.4 355 26.5
PGSC0003DMG400027203 Solanum tuberosum HOM05D006708 ORTHO05D008321 2.3e-16 90.9 215 34.0
AagrBONN_evm.TU.Sc2ySwM_228.1603 Anthoceros agrestis HOM05D006708 ORTHO05D008321 4.0e-16 90.1 327 26.6
Cre09.g405150 Chlamydomonas reinhardtii HOM05D006708 ORTHO05D008321 1.2e-15 88.6 336 28.0
CAN.G305.34 Capsicum annuum HOM05D006708 ORTHO05D008321 2.0e-15 87.8 215 33.0
SalBow2G2621 Salvia bowleyana HOM05D006708 ORTHO05D008321 2.0e-15 87.8 195 30.8
Solyc05g053190.3 Solanum lycopersicum HOM05D006708 ORTHO05D008321 2.0e-15 87.8 215 33.0
HanXRQChr10g0293331 Helianthus annuus HOM05D006708 ORTHO05D008321 4.4e-15 86.7 206 29.6
Sopen05g031700 Solanum pennellii HOM05D006708 ORTHO05D008321 4.4e-15 86.7 215 32.6
Lj4g0015836 Lotus japonicus HOM05D006708 ORTHO05D008321 1.3e-14 85.1 198 30.8
Rhsim12G0000100 Rhododendron simsii HOM05D006708 ORTHO05D007921 1.3e-14 85.1 198 28.8
Lj6A702T41 Lonicera japonica HOM05D006708 ORTHO05D008321 1.7e-14 84.7 223 28.3
Nitab4.5_0000745g0080 Nicotiana tabacum HOM05D006708 ORTHO05D008321 1.7e-14 84.7 235 29.8
MSTRG.24854 Avicennia marina HOM05D006708 ORTHO05D008321 3.7e-14 83.6 208 28.8
RcHm_v2.0_Chr4g0427681 Rosa chinensis HOM05D006708 ORTHO05D008321 4.9e-14 83.2 200 28.5
Nn3g21927 Nelumbo nucifera HOM05D006708 ORTHO05D008321 6.3e-14 82.8 243 27.2
AUR62002543 Chenopodium quinoa HOM05D006708 ORTHO05D008321 1.1e-13 82.0 213 29.1
Gohir.A02G058800 Gossypium hirsutum HOM05D006708 ORTHO05D008321 1.4e-13 81.6 198 28.3
Gorai.005G073000 Gossypium raimondii HOM05D006708 ORTHO05D008321 1.4e-13 81.6 198 28.3
CBR_g55386 Chara braunii HOM05D006708 ORTHO05D008321 2.4e-13 80.9 233 30.0
Ca_21374_v3 Cicer arietinum L. HOM05D006708 ORTHO05D008321 2.4e-13 80.9 217 30.4
QL06p014362 Quercus lobata HOM05D006708 ORTHO05D008321 2.4e-13 80.9 198 28.3
CANSAT64G0974 Cannabis sativa HOM05D006708 ORTHO05D008321 3.2e-13 80.5 216 28.2
Dinv29501 Davidia involucrata HOM05D006708 ORTHO05D008321 3.2e-13 80.5 198 28.3
AUR62029962 Chenopodium quinoa HOM05D006708 ORTHO05D008321 4.1e-13 80.1 211 28.4
FAN12G1816 Fragaria x ananassa HOM05D006708 ORTHO05D008321 4.1e-13 80.1 180 29.4
Hund22645 Selenicereus undatus HOM05D006708 ORTHO05D008321 4.1e-13 80.1 214 29.4
Migut.A01089 Erythranthe guttata HOM05D006708 ORTHO05D008321 1.2e-12 78.6 196 29.6
FvH4_4g21570 Fragaria vesca HOM05D006708 ORTHO05D008321 1.2e-12 78.6 180 29.4
Lsat_1_v5_gn_1_39980 Lactuca sativa HOM05D006708 ORTHO05D008321 1.2e-12 78.6 202 26.7
FAN17G2628 Fragaria x ananassa HOM05D006708 ORTHO05D008321 1.6e-12 78.2 180 29.4
FAN07G1828 Fragaria x ananassa HOM05D006708 ORTHO05D008321 2.7e-12 77.4 176 29.0
Potri.008G206200 Populus trichocarpa HOM05D006708 ORTHO05D008321 3.5e-12 77.0 198 27.8
arahy.Tifrunner.gnm1.ann1.H7T0W5 Arachis hypogaea HOM05D006708 ORTHO05D008321 7.8e-12 75.9 196 28.6
arahy.Tifrunner.gnm1.ann1.YU479Z Arachis hypogaea HOM05D006708 ORTHO05D008321 7.8e-12 75.9 196 28.6
Gohir.D02G064500 Gossypium hirsutum HOM05D006708 ORTHO05D008321 1.0e-11 75.5 198 27.3
Cre13.g591501 Chlamydomonas reinhardtii HOM05D006708 ORTHO05D008321 1.3e-11 75.1 345 26.4
GSVIVG01017693001 Vitis vinifera HOM05D006708 ORTHO05D008321 1.3e-11 75.1 203 28.1
SEGI_30443 Sequoiadendron giganteum HOM05D007027 ORTHO05D008765 8.6e-11 72.4 87 48.3
Carub.0007s3123 Capsella rubella HOM05D006401 ORTHO05D007864 5.6e-10 69.7 341 24.0
AT5G35400 Arabidopsis thaliana HOM05D006401 ORTHO05D007864 3.6e-09 67.0 369 23.0
Nitab4.5_0001769g0170 Nicotiana tabacum HOM05D006708 ORTHO05D008321 4.7e-09 66.6 179 29.6
ECA233G5482 Erigeron canadensis HOM05D006708 ORTHO05D008321 1.8e-08 64.7 198 28.8
Zm00001eb018490 Zea mays HOM05D005655 ORTHO05D007386 2.3e-08 64.3 360 23.9
AL7G44200 Arabidopsis lyrata HOM05D006401 ORTHO05D007864 4.0e-08 63.5 342 23.4
Ciclev10008288m.g Citrus clementina HOM05D006401 ORTHO05D007864 5.8e-07 59.7 189 28.0
arahy.Tifrunner.gnm1.ann1.3U6NKV Arachis hypogaea HOM05D005655 ORTHO05D007386 7.5e-07 59.3 344 23.3
SEGI_32206 Sequoiadendron giganteum HOM05D006708 ORTHO05D008321 1.7e-06 58.2 98 33.7
SGA_v2.0_scaffold318G48475 Striga asiatica HOM05D006401 ORTHO05D007864 4.9e-06 56.6 137 28.5


User provided reference genes

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