Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027553 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 1.2e-150 536.6 285 100.0
CSS0027843 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 4.4e-137 491.5 279 95.3
CSS0037159 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 1.1e-124 450.3 284 88.4
Rhsim03G0269700 Rhododendron simsii HOM05D007201 ORTHO05D009122 7.0e-95 351.3 280 68.9
Actinidia03796 Actinidia chinensis HOM05D007201 ORTHO05D009122 8.6e-93 344.4 280 68.6
vmacro22702 Vaccinium macrocarpon HOM05D007201 ORTHO05D009122 1.2e-75 287.3 383 49.9
TAR626G0209 Trochodendron aralioides HOM05D007201 ORTHO05D009122 2.2e-72 276.6 285 55.4
Lju50A20G7 Lonicera japonica HOM05D007201 ORTHO05D009122 3.8e-72 275.8 296 58.1
Haze_21242 Corylus avellana HOM05D007201 ORTHO05D009122 7.1e-71 271.6 288 54.2
Cfa012872 Carpinus fangiana HOM05D007201 ORTHO05D009122 7.3e-68 261.5 287 52.3
Ciclev10008517m.g Citrus clementina HOM05D007201 ORTHO05D009122 6.9e-66 255.0 284 53.5
Atru.chr7.298 Acer truncatum HOM05D007201 ORTHO05D009122 9.0e-66 254.6 284 53.5
Cc06_g23490 Coffea canephora HOM05D007201 ORTHO05D009122 2.9e-64 249.6 266 54.9
Thecc.09G202300 Theobroma cacao HOM05D007201 ORTHO05D009122 6.4e-64 248.4 283 52.7
CiPaw.15G000100 Carya illinoinensis HOM05D007201 ORTHO05D009122 1.4e-63 247.3 283 51.6
QL11p005700 Quercus lobata HOM05D007201 ORTHO05D009122 3.2e-63 246.1 268 51.1
Gohir.D04G008200 Gossypium hirsutum HOM05D007201 ORTHO05D009122 1.6e-62 243.8 283 52.7
Sabra06G0061200 Salix brachista HOM05D007201 ORTHO05D009122 1.3e-61 240.7 337 47.2
GSVIVG01034266001 Vitis vinifera HOM05D007201 ORTHO05D009122 2.3e-61 240.0 283 51.2
Dinv26498 Davidia involucrata HOM05D007201 ORTHO05D009122 6.7e-61 238.4 283 54.8
RcHm_v2.0_Chr4g0384751 Rosa chinensis HOM05D007201 ORTHO05D009122 1.1e-60 237.7 285 48.4
Gorai.012G009900 Gossypium raimondii HOM05D007201 ORTHO05D009122 9.6e-60 234.6 286 51.7
CsaV3_1G044360 Cucumis sativus L. HOM05D007201 ORTHO05D009122 6.2e-59 231.9 283 50.9
MELO3C010035.2 Cucumis melo HOM05D007201 ORTHO05D009122 1.4e-58 230.7 283 50.5
FvH4_4g00131 Fragaria vesca HOM05D007201 ORTHO05D009122 2.4e-58 229.9 284 48.9
Potri.006G081100 Populus trichocarpa HOM05D007201 ORTHO05D009122 4.0e-58 229.2 324 46.6
Peaxi162Scf00047g02450 Petunia axillaris HOM05D007201 ORTHO05D009122 5.3e-58 228.8 285 48.8
Prupe.1G000600 Prunus persica HOM05D007201 ORTHO05D009122 4.5e-57 225.7 282 47.2
MD04G1000600 Malus domestica HOM05D007201 ORTHO05D009122 6.4e-56 221.9 264 51.1
Manes.02G222200 Manihot esculenta HOM05D007201 ORTHO05D009122 6.4e-56 221.9 280 48.9
COL.COLO4_09000 Corchorus olitorius HOM05D007201 ORTHO05D009122 1.1e-55 221.1 284 49.3
Nn8g41282 Nelumbo nucifera HOM05D007201 ORTHO05D009122 2.1e-54 216.9 257 51.4
Sc10g0006090 Simmondsia chinensis HOM05D007201 ORTHO05D009122 6.0e-54 215.3 270 48.5
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 1.3e-53 214.2 275 46.9
FAN12G0236 Fragaria x ananassa HOM05D007201 ORTHO05D009122 5.6e-52 208.8 285 45.6
HanXRQChr10g0309261 Helianthus annuus HOM05D007201 ORTHO05D009122 7.4e-52 208.4 209 54.5
CAN.G1591.3 Capsicum annuum HOM05D007201 ORTHO05D009122 1.1e-50 204.5 179 63.7
arahy.Tifrunner.gnm1.ann1.X4HTYC Arachis hypogaea HOM05D007201 ORTHO05D009122 6.9e-50 201.8 268 50.4
EL10Ac2g03602 Beta vulgaris HOM05D007201 ORTHO05D009122 6.9e-50 201.8 239 49.8
SHI24431 Sapria himalayana HOM05D007201 ORTHO05D009122 2.0e-49 200.3 185 55.7
arahy.Tifrunner.gnm1.ann1.G7GJBK Arachis hypogaea HOM05D007201 ORTHO05D009122 5.8e-49 198.7 268 50.0
Nitab4.5_0004827g0030 Nicotiana tabacum HOM05D007201 ORTHO05D009122 1.7e-48 197.2 316 45.6
Hund22525 Selenicereus undatus HOM05D007201 ORTHO05D009122 3.8e-48 196.1 278 44.2
PSO339G5324 Papaver somniferum HOM05D007201 ORTHO05D009122 1.9e-47 193.7 288 45.8
ECA240G0013 Erigeron canadensis HOM05D006383 ORTHO05D007815 1.2e-46 191.0 295 41.4
Zm00001eb227240 Zea mays HOM05D007201 ORTHO05D009122 2.7e-46 189.9 231 48.5
ATR0626G320 Amborella trichopoda HOM05D007201 ORTHO05D009122 4.6e-46 189.1 250 48.4
SGA_v2.0_scaffold21G09583 Striga asiatica HOM05D007201 ORTHO05D009122 4.6e-46 189.1 259 46.3
Eucgr.C00055 Eucalyptus grandis HOM05D007201 ORTHO05D009122 6.0e-46 188.7 218 51.8
Lsat_1_v5_gn_5_80700 Lactuca sativa HOM05D007201 ORTHO05D009122 5.1e-45 185.7 239 46.4
Lalb_Chr19g0140031 Lupinus albus HOM05D007201 ORTHO05D009122 5.1e-45 185.7 164 59.1
PGR142G4385 Punica granatum HOM05D007201 ORTHO05D009122 6.7e-45 185.3 266 45.9
PGSC0003DMG400002893 Solanum tuberosum HOM05D007201 ORTHO05D009122 1.1e-44 184.5 322 40.4
Sopen12g004380 Solanum pennellii HOM05D007201 ORTHO05D009122 1.5e-44 184.1 329 41.9
VMungo1127G0228 Vigna mungo HOM05D007201 ORTHO05D009122 1.5e-44 184.1 255 43.1
Psat7g169960 Pisum sativum HOM05D007201 ORTHO05D009122 2.5e-44 183.3 200 50.0
Lj3g0009807 Lotus japonicus HOM05D007201 ORTHO05D009122 4.3e-44 182.6 208 49.0
Solyc12g009390.2 Solanum lycopersicum HOM05D007201 ORTHO05D009122 5.7e-44 182.2 326 40.8
Cpa.g.sc46.114 Carica papaya HOM05D007201 ORTHO05D009122 1.6e-43 180.6 286 43.0
FAN12G1512 Fragaria x ananassa HOM05D007201 ORTHO05D009122 2.2e-43 180.3 128 66.4
Aqoxy7G02518 Aquilegia oxysepala HOM05D007201 ORTHO05D009122 2.8e-43 179.9 289 43.3
Nitab4.5_0000073g0490 Nicotiana tabacum HOM05D007201 ORTHO05D009122 1.8e-42 177.2 338 41.4
ECA234G1264 Erigeron canadensis HOM05D007201 ORTHO05D009122 4.1e-42 176.0 282 40.8
SEGI_05170 Sequoiadendron giganteum HOM05D007201 ORTHO05D009122 4.1e-42 176.0 286 43.0
Phvul.011G018600 Phaseolus vulgaris HOM05D007201 ORTHO05D009122 5.3e-42 175.6 236 43.2
Glyma.12G016400 Glycine max HOM05D007201 ORTHO05D009122 2.0e-41 173.7 239 44.8
Aqoxy37s001 Aquilegia oxysepala HOM05D007201 ORTHO05D009122 3.8e-40 169.5 206 46.6
CANSAT25G2467 Cannabis sativa HOM05D007201 ORTHO05D009122 3.8e-40 169.5 131 61.1
Medtr4g078160 Medicago truncatula HOM05D007201 ORTHO05D009122 8.5e-40 168.3 263 44.1
CDE04G0352 Ceratophyllum demersum HOM05D007201 ORTHO05D009122 1.1e-39 167.9 179 50.3
HPP92_017373 Vanilla planifolia HOM05D007201 ORTHO05D009122 4.2e-39 166.0 258 46.1
Glyma.11G109000 Glycine max HOM05D007201 ORTHO05D009122 7.2e-39 165.2 244 43.0
Thhalv10018711m.g Eutrema salsugineum HOM05D007201 ORTHO05D009122 1.6e-38 164.1 166 51.8
Os06g0704300 Oryza sativa ssp. japonica HOM05D007201 ORTHO05D009122 2.1e-38 163.7 265 40.0
TPR.G28027 Trifolium pratense HOM05D007201 ORTHO05D009122 2.1e-38 163.7 326 38.0
Aa31LG4G5550 Aethionema arabicum HOM05D007201 ORTHO05D009122 1.0e-37 161.4 228 43.9
AL2G35270 Arabidopsis lyrata HOM05D007201 ORTHO05D009122 3.9e-37 159.5 144 53.5
Sp5g30480 Schrenkiella parvula HOM05D007201 ORTHO05D009122 5.1e-37 159.1 168 49.4
A07p40900 Brassica napus HOM05D007201 ORTHO05D009122 2.0e-36 157.1 146 56.8
BraA07t31630Z Brassica rapa HOM05D007201 ORTHO05D009122 2.0e-36 157.1 146 56.8
Carub.0002s2218 Capsella rubella HOM05D007201 ORTHO05D009122 7.4e-36 155.2 225 43.6
AT1G75340 Arabidopsis thaliana HOM05D007201 ORTHO05D009122 9.7e-36 154.8 138 53.6
C06p49330 Brassica napus HOM05D007201 ORTHO05D009122 9.7e-36 154.8 147 54.4
THA.LOC104809224 Tarenaya hassleriana HOM05D007201 ORTHO05D009122 1.8e-34 150.6 194 42.8
CARHR068690 Cardamine hirsuta HOM05D007201 ORTHO05D009122 3.1e-34 149.8 162 48.1
BcaC08g47362 Brassica carinata HOM05D007201 ORTHO05D009122 5.3e-34 149.1 143 53.8
BolC6t39968H Brassica oleracea HOM05D007201 ORTHO05D009122 5.3e-34 149.1 143 53.8
AUR62027959 Chenopodium quinoa HOM05D007201 ORTHO05D009122 4.5e-33 146.0 132 58.3
FAN17G0247 Fragaria x ananassa HOM05D007201 ORTHO05D009122 2.5e-31 140.2 84 71.4
FAN22G0406 Fragaria x ananassa HOM05D007201 ORTHO05D009122 2.3e-29 133.7 284 38.0
Duzib168G1263 Durio zibethinus HOM05D007201 ORTHO05D009122 5.1e-29 132.5 202 44.1
CSS0006520 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 2.8e-27 126.7 62 90.3
CSS0048863 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 2.8e-27 126.7 62 90.3
Oeu000954.1 Olea europaea HOM05D007201 ORTHO05D009122 6.3e-27 125.6 219 37.4
unitig_8.g3542 Utricularia gibba HOM05D007201 ORTHO05D009122 9.1e-26 121.7 196 39.8
Mapoly0005s0044 Marchantia polymorpha HOM05D007201 ORTHO05D009122 5.5e-23 112.5 183 39.3
Migut.L01609 Erythranthe guttata HOM05D007201 ORTHO05D009122 2.0e-20 104.0 220 35.5
AagrBONN_evm.TU.Sc2ySwM_117.2509 Anthoceros agrestis HOM05D007201 ORTHO05D009122 6.3e-19 99.0 197 35.0
Pp3c7_12210 Physcomitrium patens HOM05D007201 ORTHO05D009122 1.3e-16 91.3 267 33.7
CBR_g15955 Chara braunii HOM05D007201 ORTHO05D009122 2.9e-16 90.1 94 48.9
ClCG03G010480 Citrullus lanatus HOM05D007201 ORTHO05D009122 2.9e-16 90.1 193 40.4
Gohir.A05G407400 Gossypium hirsutum HOM05D007201 ORTHO05D009122 6.1e-14 82.4 208 37.5
Ah.11g043520 Amaranthus hybridus HOM05D000145 ORTHO05D000115 3.2e-07 60.1 147 38.1


User provided reference genes

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