Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024691 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.5e-92 342.8 175 100.0
CSS0031844 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 3.3e-71 271.9 180 81.7
Lsat_1_v5_gn_5_102820 Lactuca sativa HOM05D005935 ORTHO05D007012 1.8e-45 186.4 142 73.9
MD12G1207200 Malus domestica HOM05D005935 ORTHO05D007012 2.4e-45 186.0 143 72.0
Cc02_g34830 Coffea canephora HOM05D005935 ORTHO05D007012 5.4e-45 184.9 147 72.1
Eucgr.H03282 Eucalyptus grandis HOM05D005935 ORTHO05D007012 5.4e-45 184.9 146 72.6
Manes.09G175700 Manihot esculenta HOM05D005935 ORTHO05D007012 5.4e-45 184.9 146 72.6
Dinv24425 Davidia involucrata HOM05D005935 ORTHO05D007012 7.0e-45 184.5 149 70.5
MD04G1195100 Malus domestica HOM05D005935 ORTHO05D007012 1.2e-44 183.7 147 71.4
Sed0001365 Sechium edule HOM05D005935 ORTHO05D007012 1.2e-44 183.7 145 74.5
ClCG02G015080 Citrullus lanatus HOM05D005935 ORTHO05D007012 3.5e-44 182.2 145 71.7
MELO3C004198.2 Cucumis melo HOM05D005935 ORTHO05D007012 3.5e-44 182.2 145 71.7
Hma1.2p1_0008F-1.1_g005750 Hydrangea macrophylla HOM05D005935 ORTHO05D007012 3.5e-44 182.2 148 70.3
Prupe.6G314900 Prunus persica HOM05D005935 ORTHO05D007012 4.5e-44 181.8 146 71.2
PGR031G1309 Punica granatum HOM05D005935 ORTHO05D007012 4.5e-44 181.8 146 70.5
CsaV3_2G006940 Cucumis sativus L. HOM05D005935 ORTHO05D007012 7.7e-44 181.0 145 71.0
Glyma.19G228900 Glycine max HOM05D005935 ORTHO05D007012 7.7e-44 181.0 146 71.2
Phvul.001G225500 Phaseolus vulgaris HOM05D005935 ORTHO05D007012 7.7e-44 181.0 146 71.2
SGA_v2.0_scaffold81G26126 Striga asiatica HOM05D005935 ORTHO05D007012 7.7e-44 181.0 148 68.9
GSVIVG01031220001 Vitis vinifera HOM05D005935 ORTHO05D007012 7.7e-44 181.0 149 69.1
MSTRG.27950 Avicennia marina HOM05D005935 ORTHO05D007012 1.0e-43 180.6 148 68.9
arahy.Tifrunner.gnm1.ann1.I9BDFC Arachis hypogaea HOM05D005935 ORTHO05D007012 1.7e-43 179.9 146 70.5
VMungo1383G1193 Vigna mungo HOM05D005935 ORTHO05D007012 2.3e-43 179.5 146 70.5
Lj1g0021681 Lotus japonicus HOM05D005935 ORTHO05D007012 2.9e-43 179.1 147 70.7
SGA_v2.0_scaffold80G25879 Striga asiatica HOM05D005935 ORTHO05D007012 3.8e-43 178.7 148 67.6
arahy.Tifrunner.gnm1.ann1.7UDZ1N Arachis hypogaea HOM05D005935 ORTHO05D007012 5.0e-43 178.3 146 70.5
arahy.Tifrunner.gnm1.ann1.G5WI6L Arachis hypogaea HOM05D005935 ORTHO05D007012 5.0e-43 178.3 146 70.5
arahy.Tifrunner.gnm1.ann1.H1X696 Arachis hypogaea HOM05D005935 ORTHO05D007012 5.0e-43 178.3 146 70.5
Os03g0831900 Oryza sativa ssp. japonica HOM05D005935 ORTHO05D007012 5.0e-43 178.3 146 68.5
Atru.chr2.148 Acer truncatum HOM05D005935 ORTHO05D007012 6.6e-43 177.9 149 68.5
CiPaw.07G028100 Carya illinoinensis HOM05D005935 ORTHO05D007012 6.6e-43 177.9 144 70.1
Haze_04079 Corylus avellana HOM05D005935 ORTHO05D007012 8.6e-43 177.6 143 71.3
Ah.06g188880 Amaranthus hybridus HOM05D005935 ORTHO05D007012 1.1e-42 177.2 146 67.8
EL10Ac4g09829 Beta vulgaris HOM05D005935 ORTHO05D007012 1.1e-42 177.2 146 67.8
Cpa.g.sc48.144 Carica papaya HOM05D005935 ORTHO05D007012 1.1e-42 177.2 146 70.5
Glyma.03G231900 Glycine max HOM05D005935 ORTHO05D007012 1.1e-42 177.2 146 70.5
Actinidia16851 Actinidia chinensis HOM05D005935 ORTHO05D007012 1.9e-42 176.4 146 69.9
Ca_09298_v3 Cicer arietinum L. HOM05D005935 ORTHO05D007012 2.5e-42 176.0 146 69.9
FvH4_6g07240 Fragaria vesca HOM05D005935 ORTHO05D007012 2.5e-42 176.0 146 70.5
Nn3g21642 Nelumbo nucifera HOM05D005935 ORTHO05D007012 2.5e-42 176.0 145 69.0
SalBow3G1520 Salvia bowleyana HOM05D005935 ORTHO05D007012 2.5e-42 176.0 147 68.0
TWI36G1229 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 2.5e-42 176.0 146 69.2
Nitab4.5_0000155g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 3.3e-42 175.6 147 66.7
Migut.N01391 Erythranthe guttata HOM05D005935 ORTHO05D007012 4.2e-42 175.3 148 66.9
Aqoxy2G00839 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 5.6e-42 174.9 149 67.8
Lalb_Chr18g0046051 Lupinus albus HOM05D005935 ORTHO05D007012 7.2e-42 174.5 145 69.0
TAR362G1094 Trochodendron aralioides HOM05D005935 ORTHO05D007012 7.2e-42 174.5 148 68.2
Gohir.D08G223300 Gossypium hirsutum HOM05D005935 ORTHO05D007012 9.5e-42 174.1 146 69.2
Gorai.004G237200 Gossypium raimondii HOM05D005935 ORTHO05D007012 9.5e-42 174.1 146 69.2
RcHm_v2.0_Chr3g0456881 Rosa chinensis HOM05D005935 ORTHO05D007012 9.5e-42 174.1 146 69.2
Gohir.A08G206600 Gossypium hirsutum HOM05D005935 ORTHO05D007012 1.2e-41 173.7 146 69.2
HanXRQChr10g0299201 Helianthus annuus HOM05D005935 ORTHO05D007012 1.2e-41 173.7 144 68.8
Zm00001eb121760 Zea mays HOM05D005935 ORTHO05D007012 2.1e-41 172.9 148 66.2
Medtr7g112060 Medicago truncatula HOM05D005935 ORTHO05D007012 2.8e-41 172.6 145 69.0
FAN05G5324 Fragaria x ananassa HOM05D005935 ORTHO05D007012 3.6e-41 172.2 155 65.8
FAN14G3557 Fragaria x ananassa HOM05D005935 ORTHO05D007012 4.7e-41 171.8 155 65.8
Ciclev10002528m.g Citrus clementina HOM05D005935 ORTHO05D007012 6.1e-41 171.4 146 67.8
FAN09G4449 Fragaria x ananassa HOM05D005935 ORTHO05D007012 8.0e-41 171.0 146 69.2
FAN02G1619 Fragaria x ananassa HOM05D005935 ORTHO05D007012 1.0e-40 170.6 155 65.2
TAR636G0846 Trochodendron aralioides HOM05D005935 ORTHO05D007012 1.0e-40 170.6 149 67.1
CDE11G0767 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 1.4e-40 170.2 145 66.9
TWI56G1463 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 1.4e-40 170.2 146 67.8
Duzib128G1094 Durio zibethinus HOM05D005935 ORTHO05D007012 1.8e-40 169.9 146 67.8
Lalb_Chr04g0260471 Lupinus albus HOM05D005935 ORTHO05D007012 1.8e-40 169.9 168 60.7
Nitab4.5_0000368g0260 Nicotiana tabacum HOM05D005935 ORTHO05D007012 1.8e-40 169.9 157 61.1
Aqoxy4G02482 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 2.3e-40 169.5 149 66.4
unitig_21.g20172 Utricularia gibba HOM05D005935 ORTHO05D007012 3.0e-40 169.1 145 66.9
vmacro01555 Vaccinium macrocarpon HOM05D005935 ORTHO05D007012 3.0e-40 169.1 186 55.9
CDE05G0147 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 5.2e-40 168.3 145 66.2
ECA234G4853 Erigeron canadensis HOM05D005935 ORTHO05D007012 5.2e-40 168.3 146 67.1
Psat3g013040 Pisum sativum HOM05D005935 ORTHO05D007012 5.2e-40 168.3 146 67.1
Thecc.05G321000 Theobroma cacao HOM05D005935 ORTHO05D007012 6.8e-40 167.9 146 66.4
SEGI_34613 Sequoiadendron giganteum HOM05D005935 ORTHO05D007012 1.2e-39 167.2 147 67.3
COL.COLO4_04140 Corchorus olitorius HOM05D005935 ORTHO05D007012 2.0e-39 166.4 146 66.4
Peaxi162Scf00673g00126 Petunia axillaris HOM05D005935 ORTHO05D007012 2.0e-39 166.4 140 67.9
AUR62000683 Chenopodium quinoa HOM05D005935 ORTHO05D007012 2.6e-39 166.0 148 64.2
Potri.013G010300 Populus trichocarpa HOM05D005935 ORTHO05D007012 2.6e-39 166.0 147 66.7
Sc09g0002670 Simmondsia chinensis HOM05D005935 ORTHO05D007012 2.6e-39 166.0 146 65.1
ATR0767G209 Amborella trichopoda HOM05D005935 ORTHO05D007012 3.4e-39 165.6 143 67.1
CANSAT54G1507 Cannabis sativa HOM05D005935 ORTHO05D007012 3.4e-39 165.6 146 65.1
CSS0034550 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 4.4e-39 165.2 219 52.1
CAN.G1715.16 Capsicum annuum HOM05D005935 ORTHO05D007012 4.4e-39 165.2 147 65.3
Mapoly0111s0002 Marchantia polymorpha HOM05D005935 ORTHO05D007012 4.4e-39 165.2 145 64.1
CARHR080230 Cardamine hirsuta HOM05D005935 ORTHO05D007012 5.7e-39 164.9 145 65.5
Solyc01g100330.3 Solanum lycopersicum HOM05D005935 ORTHO05D007012 5.7e-39 164.9 147 65.3
Sopen01g043840 Solanum pennellii HOM05D005935 ORTHO05D007012 5.7e-39 164.9 147 65.3
THA.LOC104802776 Tarenaya hassleriana HOM05D005935 ORTHO05D007012 5.7e-39 164.9 145 65.5
BcaC05g30089 Brassica carinata HOM05D005935 ORTHO05D007012 7.5e-39 164.5 140 67.1
C05p61480 Brassica napus HOM05D002110 ORTHO05D007012 7.5e-39 164.5 140 67.1
BolC5t34806H Brassica oleracea HOM05D002110 ORTHO05D007012 7.5e-39 164.5 140 67.1
BraA05t22944Z Brassica rapa HOM05D002110 ORTHO05D007012 7.5e-39 164.5 140 67.1
Nitab4.5_0013342g0020 Nicotiana tabacum HOM05D000001 ORTHO05D004269 7.5e-39 164.5 150 62.0
QL01p019294 Quercus lobata HOM05D005935 ORTHO05D007012 7.5e-39 164.5 141 67.4
QL03p018299 Quercus lobata HOM05D005935 ORTHO05D007012 7.5e-39 164.5 146 65.8
AUR62005273 Chenopodium quinoa HOM05D005935 ORTHO05D007012 9.8e-39 164.1 144 63.9
PGSC0003DMG400002806 Solanum tuberosum HOM05D005935 ORTHO05D007012 9.8e-39 164.1 147 65.3
Carub.0003s0513 Capsella rubella HOM05D005935 ORTHO05D007012 2.9e-38 162.5 142 66.9
Rhsim11G0094200 Rhododendron simsii HOM05D005935 ORTHO05D007012 4.9e-38 161.8 186 53.8
PSO170G3047 Papaver somniferum HOM05D005935 ORTHO05D007012 6.4e-38 161.4 144 65.3
PSO357G0321 Papaver somniferum HOM05D005935 ORTHO05D007012 6.4e-38 161.4 144 65.3
PSO478G5244 Papaver somniferum HOM05D005935 ORTHO05D007012 1.1e-37 160.6 142 66.2
Sp3g04650 Schrenkiella parvula HOM05D005935 ORTHO05D007012 1.1e-37 160.6 145 64.1
AT3G05760 Arabidopsis thaliana HOM05D005935 ORTHO05D007012 3.2e-37 159.1 145 64.1
TPR.G1633 Trifolium pratense HOM05D005935 ORTHO05D007012 1.6e-36 156.8 139 66.2
AL3G16500 Arabidopsis lyrata HOM05D005935 ORTHO05D007012 2.7e-36 156.0 145 62.8
BcaC05g29782 Brassica carinata HOM05D005935 ORTHO05D007012 4.6e-36 155.2 140 65.0
Aa31LG5G16170 Aethionema arabicum HOM05D005935 ORTHO05D007012 5.9e-36 154.8 186 53.8
Thhalv10022198m.g Eutrema salsugineum HOM05D005935 ORTHO05D007012 7.8e-36 154.5 193 51.8
Pp3c4_20180 Physcomitrium patens HOM05D005935 ORTHO05D007012 1.0e-35 154.1 146 62.3
CSS0009551 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 2.9e-35 152.5 148 62.8
CSS0047945 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.9e-34 149.8 107 76.6
AagrBONN_evm.TU.Sc2ySwM_344.1201 Anthoceros agrestis HOM05D005935 ORTHO05D007012 2.5e-34 149.4 146 56.8
AagrBONN_evm.TU.Sc2ySwM_228.1845 Anthoceros agrestis HOM05D005935 ORTHO05D007012 1.2e-33 147.1 142 57.7
AagrBONN_evm.TU.Sc2ySwM_368.1862 Anthoceros agrestis HOM05D005935 ORTHO05D007012 1.6e-33 146.7 142 59.2
Hund07136 Selenicereus undatus HOM05D005935 ORTHO05D007012 2.1e-33 146.4 146 60.3
Lj5A336T44 Lonicera japonica HOM05D005935 ORTHO05D007012 3.6e-33 145.6 116 69.8
DCAR_005416 Daucus carota HOM05D005935 ORTHO05D007012 1.0e-32 144.1 114 71.1
HPP92_015241 Vanilla planifolia HOM05D005935 ORTHO05D007012 6.8e-32 141.4 141 63.1
SMO201G0167 Selaginella moellendorffii HOM05D005935 ORTHO05D007012 9.8e-31 137.5 146 54.1
Hund21747 Selenicereus undatus HOM05D005935 ORTHO05D007012 2.5e-26 122.9 135 52.6
Sabra13G0008800 Salix brachista HOM05D005935 ORTHO05D007012 3.6e-25 119.0 201 42.3
Oeu013219.2 Olea europaea HOM05D005935 ORTHO05D007012 8.1e-25 117.9 159 53.5
Pp3c12_7700 Physcomitrium patens HOM05D005935 ORTHO05D007012 5.2e-24 115.2 100 66.0
RcHm_v2.0_Chr7g0179971 Rosa chinensis HOM05D005935 ORTHO05D007012 1.3e-22 110.5 144 50.0
CBR_g38440 Chara braunii HOM05D005935 ORTHO05D007012 3.0e-19 99.4 105 55.2
Cre07.g341650 Chlamydomonas reinhardtii HOM05D005935 ORTHO05D007012 1.5e-18 97.1 167 40.1
Nitab4.5_0007747g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 7.3e-18 94.7 61 82.0
Actinidia35528 Actinidia chinensis HOM05D005935 ORTHO05D007012 1.8e-16 90.1 270 33.3
MCO03G264 Micromonas commoda HOM05D005935 ORTHO05D007012 6.4e-14 81.6 140 41.4
FAN04G2955 Fragaria x ananassa HOM05D005935 ORTHO05D007012 2.4e-08 63.2 134 40.3
CSS0011561 Camellia sinensis var. sinensis HOM05D044005 ORTHO05D110049 5.8e-07 58.5 29 100.0


User provided reference genes

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