Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022858 Camellia sinensis var. sinensis HOM05D004511 ORTHO05D005348 8.6e-136 486.9 229 100.0
CSS0015875 Camellia sinensis var. sinensis HOM05D004511 ORTHO05D005348 4.3e-127 458.0 225 96.9
Dinv29796 Davidia involucrata HOM05D004511 ORTHO05D005348 2.5e-111 405.6 208 91.8
Oeu061869.1 Olea europaea HOM05D004511 ORTHO05D005348 2.5e-106 389.0 208 86.5
Atru.chr4.1900 Acer truncatum HOM05D004511 ORTHO05D005348 4.2e-106 388.3 208 86.5
QL06p021350 Quercus lobata HOM05D004511 ORTHO05D005348 4.2e-106 388.3 208 88.0
vmacro08562 Vaccinium macrocarpon HOM05D004511 ORTHO05D005348 7.1e-106 387.5 208 87.5
CiPaw.01G177000 Carya illinoinensis HOM05D004511 ORTHO05D005348 4.6e-105 384.8 208 87.0
Duzib151G0197 Durio zibethinus HOM05D004511 ORTHO05D005348 4.6e-105 384.8 208 85.6
Thecc.04G266800 Theobroma cacao HOM05D004511 ORTHO05D005348 4.6e-105 384.8 208 86.1
CANSAT78G2334 Cannabis sativa HOM05D004511 ORTHO05D005348 6.0e-105 384.4 208 85.6
Lj6A637T63 Lonicera japonica HOM05D004511 ORTHO05D005348 3.0e-104 382.1 216 83.8
RcHm_v2.0_Chr4g0395811 Rosa chinensis HOM05D004511 ORTHO05D005348 3.0e-104 382.1 208 85.6
Ciclev10004190m.g Citrus clementina HOM05D004511 ORTHO05D005348 5.1e-104 381.3 208 84.1
SGA_v2.0_scaffold67G22677 Striga asiatica HOM05D004511 ORTHO05D005348 5.1e-104 381.3 208 84.1
GSVIVG01027931001 Vitis vinifera HOM05D004511 ORTHO05D005348 8.7e-104 380.6 208 85.1
COL.COLO4_15984 Corchorus olitorius HOM05D004511 ORTHO05D005348 1.9e-103 379.4 208 85.6
MD13G1223200 Malus domestica HOM05D004511 ORTHO05D005348 3.3e-103 378.6 208 84.6
MSTRG.9851 Avicennia marina HOM05D004511 ORTHO05D005348 4.3e-103 378.3 208 82.7
Potri.010G065000 Populus trichocarpa HOM05D004511 ORTHO05D005348 9.6e-103 377.1 208 82.7
FvH4_4g05000 Fragaria vesca HOM05D004511 ORTHO05D005348 1.3e-102 376.7 208 83.7
FAN12G0867 Fragaria x ananassa HOM05D004511 ORTHO05D005348 1.3e-102 376.7 208 83.7
Prupe.1G050200 Prunus persica HOM05D004511 ORTHO05D005348 2.8e-102 375.6 208 84.1
TWI73G0808 Tripterygium wilfordii HOM05D004511 ORTHO05D005348 2.8e-102 375.6 208 84.6
TAR365G1143 Trochodendron aralioides HOM05D004511 ORTHO05D005348 2.8e-102 375.6 208 85.6
Sc11g0002730 Simmondsia chinensis HOM05D004511 ORTHO05D005348 6.2e-102 374.4 208 84.6
ClCG05G003940 Citrullus lanatus HOM05D004511 ORTHO05D005348 1.1e-101 373.6 208 81.7
Migut.G00563 Erythranthe guttata HOM05D004511 ORTHO05D005348 1.1e-101 373.6 208 82.2
Sed0014740 Sechium edule HOM05D004511 ORTHO05D005348 1.1e-101 373.6 208 81.7
MELO3C006369.2 Cucumis melo HOM05D004511 ORTHO05D005348 4.0e-101 371.7 208 81.2
CsaV3_3G011610 Cucumis sativus L. HOM05D004511 ORTHO05D005348 9.0e-101 370.5 208 81.2
Cc03_g06420 Coffea canephora HOM05D004511 ORTHO05D005348 2.0e-100 369.4 212 81.6
Nitab4.5_0005154g0040 Nicotiana tabacum HOM05D004511 ORTHO05D005348 2.6e-100 369.0 208 81.7
Nitab4.5_0001041g0180 Nicotiana tabacum HOM05D004511 ORTHO05D005348 7.6e-100 367.5 208 81.2
Peaxi162Scf00531g00610 Petunia axillaris HOM05D004511 ORTHO05D005348 2.9e-99 365.5 208 82.2
Solyc09g090870.3 Solanum lycopersicum HOM05D004511 ORTHO05D005348 2.9e-99 365.5 208 82.2
BcaC06g35683 Brassica carinata HOM05D004511 ORTHO05D005348 3.8e-99 365.2 208 80.8
C07p12050 Brassica napus HOM05D004511 ORTHO05D005348 3.8e-99 365.2 208 80.8
BolC7t41673H Brassica oleracea HOM05D004511 ORTHO05D005348 3.8e-99 365.2 208 80.8
EL10Ac9g21855 Beta vulgaris HOM05D004511 ORTHO05D005348 8.4e-99 364.0 208 80.8
Gohir.A09G230900 Gossypium hirsutum HOM05D004511 ORTHO05D005348 8.4e-99 364.0 208 82.2
Gohir.D09G232000 Gossypium hirsutum HOM05D004511 ORTHO05D005348 8.4e-99 364.0 208 82.2
Gorai.006G254800 Gossypium raimondii HOM05D004511 ORTHO05D005348 8.4e-99 364.0 208 82.2
Lalb_Chr02g0150721 Lupinus albus HOM05D004511 ORTHO05D005348 8.4e-99 364.0 208 80.3
Sp3g22130 Schrenkiella parvula HOM05D004511 ORTHO05D005348 8.4e-99 364.0 208 80.8
AUR62011461 Chenopodium quinoa HOM05D004511 ORTHO05D005348 1.4e-98 363.2 208 81.2
AUR62016594 Chenopodium quinoa HOM05D004511 ORTHO05D005348 1.9e-98 362.8 208 81.2
ECA248G2418 Erigeron canadensis HOM05D004511 ORTHO05D005348 1.9e-98 362.8 208 80.8
Sopen09g033830 Solanum pennellii HOM05D004511 ORTHO05D005348 2.5e-98 362.5 208 81.7
A07p07990 Brassica napus HOM05D004511 ORTHO05D005348 3.2e-98 362.1 208 80.3
BraA07t28586Z Brassica rapa HOM05D004511 ORTHO05D005348 3.2e-98 362.1 208 80.3
BcaB06g26614 Brassica carinata HOM05D004511 ORTHO05D005348 4.2e-98 361.7 208 80.3
Thhalv10002376m.g Eutrema salsugineum HOM05D004511 ORTHO05D005348 4.2e-98 361.7 208 80.3
CAN.G524.10 Capsicum annuum HOM05D004511 ORTHO05D005348 5.5e-98 361.3 200 84.0
DCAR_027355 Daucus carota HOM05D004511 ORTHO05D005348 5.5e-98 361.3 208 81.7
Actinidia27093 Actinidia chinensis HOM05D004511 ORTHO05D005348 7.1e-98 360.9 208 84.1
AT3G24320 Arabidopsis thaliana HOM05D004511 ORTHO05D005348 7.1e-98 360.9 208 79.3
Ah.01g020260 Amaranthus hybridus HOM05D004511 ORTHO05D005348 9.3e-98 360.5 208 79.8
Carub.0003s2466 Capsella rubella HOM05D004511 ORTHO05D005348 9.3e-98 360.5 208 79.3
Eucgr.H02905 Eucalyptus grandis HOM05D004511 ORTHO05D005348 9.3e-98 360.5 208 79.8
Nn1g02989 Nelumbo nucifera HOM05D004511 ORTHO05D005348 2.1e-97 359.4 208 77.9
HanXRQChr06g0182821 Helianthus annuus HOM05D004511 ORTHO05D005348 2.7e-97 359.0 208 80.8
THA.LOC104821629 Tarenaya hassleriana HOM05D004511 ORTHO05D005348 3.5e-97 358.6 208 79.3
CARHR100420 Cardamine hirsuta HOM05D004511 ORTHO05D005348 4.6e-97 358.2 208 79.3
HanXRQChr01g0023051 Helianthus annuus HOM05D004511 ORTHO05D005348 4.6e-97 358.2 208 81.2
Aa31LG8G11050 Aethionema arabicum HOM05D004511 ORTHO05D005348 6.0e-97 357.8 208 78.8
unitig_747.g21671 Utricularia gibba HOM05D004511 ORTHO05D005348 1.8e-96 356.3 208 78.8
Aqoxy5G00136 Aquilegia oxysepala HOM05D004511 ORTHO05D005348 3.0e-96 355.5 208 78.8
Hund00489 Selenicereus undatus HOM05D004511 ORTHO05D005348 3.0e-96 355.5 200 81.0
PGR004G0717 Punica granatum HOM05D004511 ORTHO05D005348 3.9e-96 355.1 208 77.9
Lsat_1_v5_gn_2_41221 Lactuca sativa HOM05D004511 ORTHO05D005348 1.5e-95 353.2 208 79.3
arahy.Tifrunner.gnm1.ann1.Z900IQ Arachis hypogaea HOM05D004511 ORTHO05D005348 5.7e-95 351.3 209 78.0
Lj6g0021678 Lotus japonicus HOM05D004511 ORTHO05D005348 2.2e-94 349.4 208 76.9
arahy.Tifrunner.gnm1.ann1.QET6JI Arachis hypogaea HOM05D004511 ORTHO05D005348 4.8e-94 348.2 208 77.9
PSO210G5810 Papaver somniferum HOM05D004511 ORTHO05D005348 4.8e-94 348.2 208 76.0
Glyma.10G130700 Glycine max HOM05D004511 ORTHO05D005348 2.4e-93 345.9 211 75.8
PSO170G1037 Papaver somniferum HOM05D004511 ORTHO05D005348 5.3e-93 344.7 208 75.5
Glyma.20G073500 Glycine max HOM05D004511 ORTHO05D005348 1.0e-91 340.5 208 76.0
Zm00001eb426210 Zea mays HOM05D004511 ORTHO05D005348 1.3e-91 340.1 208 73.1
Medtr1g045670 Medicago truncatula HOM05D004511 ORTHO05D005348 5.0e-91 338.2 204 76.0
Os04g0507000 Oryza sativa ssp. japonica HOM05D004511 ORTHO05D005348 8.5e-91 337.4 208 73.1
Phvul.007G232900 Phaseolus vulgaris HOM05D004511 ORTHO05D005348 7.9e-89 330.9 208 74.0
Psat6g108520 Pisum sativum HOM05D004511 ORTHO05D005348 2.3e-88 329.3 208 73.1
HPP92_015182 Vanilla planifolia HOM05D004511 ORTHO05D005348 5.1e-88 328.2 208 71.2
ATR0787G210 Amborella trichopoda HOM05D004511 ORTHO05D005348 3.7e-86 322.0 208 70.2
Manes.03G157900 Manihot esculenta HOM05D004511 ORTHO05D005348 1.1e-85 320.5 176 85.8
CDE08G1197 Ceratophyllum demersum HOM05D004511 ORTHO05D005348 4.2e-82 308.5 210 69.0
Hund00476 Selenicereus undatus HOM05D004511 ORTHO05D005348 7.2e-82 307.8 176 80.7
AL2G22890 Arabidopsis lyrata HOM05D004511 ORTHO05D005348 7.9e-81 304.3 166 81.9
TPR.G23996 Trifolium pratense HOM05D004511 ORTHO05D005348 1.0e-80 303.9 186 74.2
AL3G39770 Arabidopsis lyrata HOM05D004511 ORTHO05D005348 3.9e-80 302.0 208 69.2
FAN22G0933 Fragaria x ananassa HOM05D004511 ORTHO05D005348 7.7e-76 287.7 183 75.4
SEGI_11740 Sequoiadendron giganteum HOM05D004511 ORTHO05D005348 2.2e-75 286.2 208 63.0
SHI00812 Sapria himalayana HOM05D004511 ORTHO05D005348 8.0e-73 277.7 212 63.2
FAN17G0167 Fragaria x ananassa HOM05D004511 ORTHO05D005348 8.8e-72 274.2 208 66.8
Rhsim04G0171100 Rhododendron simsii HOM05D004511 ORTHO05D005348 5.7e-71 271.6 302 51.3
Mapoly0067s0046 Marchantia polymorpha HOM05D004511 ORTHO05D005348 4.8e-70 268.5 212 57.5
SMO364G0324 Selaginella moellendorffii HOM05D004511 ORTHO05D005348 1.3e-67 260.4 208 58.2
Pp3c8_22090 Physcomitrium patens HOM05D004511 ORTHO05D005348 4.5e-60 235.3 213 51.2
Ca_11884_v3 Cicer arietinum L. HOM05D004511 ORTHO05D005348 1.1e-58 230.7 208 55.3
Pp3c23_17640 Physcomitrium patens HOM05D004511 ORTHO05D005348 1.3e-54 217.2 209 47.4
VMungo0720G0419 Vigna mungo HOM05D004511 ORTHO05D005348 4.2e-50 202.2 184 56.0
Ca_07387_v3 Cicer arietinum L. HOM05D004511 ORTHO05D005348 2.3e-48 196.4 204 51.5
CBR_g22304 Chara braunii HOM05D000019 ORTHO05D000002 2.0e-44 183.3 210 43.8
Ca_26419_v3 Cicer arietinum L. HOM05D004511 ORTHO05D005348 7.3e-42 174.9 185 50.3
Solyc09g090890.3 Solanum lycopersicum HOM05D004511 ORTHO05D005348 4.1e-29 132.5 98 70.4
Sopen09g033860 Solanum pennellii HOM05D004511 ORTHO05D005348 6.4e-22 108.6 65 81.5
Atru.chr4.2015 Acer truncatum HOM05D004511 ORTHO05D005348 1.9e-21 107.1 203 35.5
PRCOL_00002937 Prasinoderma coloniale HOM05D004511 ORTHO05D005348 1.9e-21 107.1 218 33.9
MCO07G727 Micromonas commoda HOM05D004511 ORTHO05D005348 1.3e-14 84.3 223 30.0
Ca_21499_v3 Cicer arietinum L. HOM05D004511 ORTHO05D005348 3.1e-08 63.2 31 83.9
ATR0787G159 Amborella trichopoda HOM05D004511 ORTHO05D005348 5.3e-08 62.4 39 66.7


User provided reference genes

Program Settings