Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019840 Camellia sinensis var. sinensis HOM05D004635 ORTHO05D005899 0.0e+00 1238.8 629 100.0
Actinidia02016 Actinidia chinensis HOM05D004635 ORTHO05D005899 1.9e-286 988.8 637 80.8
Dinv38955 Davidia involucrata HOM05D004635 ORTHO05D005899 3.2e-265 918.3 636 75.2
vmacro11312 Vaccinium macrocarpon HOM05D004635 ORTHO05D005899 9.6e-262 906.7 620 77.3
Lj6A677T80 Lonicera japonica HOM05D004635 ORTHO05D005899 9.0e-236 820.5 646 67.5
Hma1.2p1_0377F.1_g139240 Hydrangea macrophylla HOM05D004635 ORTHO05D005899 3.8e-234 815.1 629 69.6
Atru.chr9.2220 Acer truncatum HOM05D004635 ORTHO05D005899 2.2e-229 799.3 636 66.5
COL.COLO4_34438 Corchorus olitorius HOM05D004635 ORTHO05D005899 1.4e-228 796.6 637 65.5
Duzib084G1397 Durio zibethinus HOM05D004635 ORTHO05D005899 9.1e-228 793.9 629 66.0
TAR636G1354 Trochodendron aralioides HOM05D004635 ORTHO05D005899 1.4e-223 780.0 632 67.6
RcHm_v2.0_Chr7g0211871 Rosa chinensis HOM05D004635 ORTHO05D005899 3.3e-222 775.4 629 65.2
Thecc.03G276500 Theobroma cacao HOM05D004635 ORTHO05D005899 2.2e-221 772.7 629 64.9
Gohir.A09G192700 Gossypium hirsutum HOM05D004635 ORTHO05D005899 1.2e-219 766.9 627 64.6
Gohir.D09G186900 Gossypium hirsutum HOM05D004635 ORTHO05D005899 1.2e-219 766.9 627 64.6
Gorai.006G209700 Gossypium raimondii HOM05D004635 ORTHO05D005899 4.5e-219 765.0 627 64.4
CAN.G792.84 Capsicum annuum HOM05D004635 ORTHO05D005899 5.5e-217 758.1 603 66.2
Manes.01G063000 Manihot esculenta HOM05D004635 ORTHO05D005899 1.6e-216 756.5 631 62.9
PGR042G2640 Punica granatum HOM05D004635 ORTHO05D005899 1.4e-215 753.4 630 64.4
Ciclev10019281m.g Citrus clementina HOM05D004635 ORTHO05D005899 3.0e-215 752.3 634 62.0
Nitab4.5_0003907g0020 Nicotiana tabacum HOM05D004635 ORTHO05D005899 2.6e-214 749.2 607 65.4
SGA_v2.0_scaffold146G36254 Striga asiatica HOM05D004635 ORTHO05D005899 7.5e-214 747.7 642 62.6
TAR629G3080 Trochodendron aralioides HOM05D004635 ORTHO05D005899 7.5e-214 747.7 619 66.2
ECA240G4094 Erigeron canadensis HOM05D004635 ORTHO05D005899 2.8e-213 745.7 630 63.7
Sabra03G0088200 Salix brachista HOM05D004635 ORTHO05D005899 3.7e-213 745.3 626 63.3
MD14G1101800 Malus domestica HOM05D004635 ORTHO05D005899 1.4e-212 743.4 626 64.2
Peaxi162Scf00102g01512 Petunia axillaris HOM05D004635 ORTHO05D005899 1.8e-212 743.0 634 63.7
Potri.003G124700 Populus trichocarpa HOM05D004635 ORTHO05D005899 3.1e-212 742.3 627 63.3
Nitab4.5_0004836g0050 Nicotiana tabacum HOM05D004635 ORTHO05D005899 1.2e-211 740.3 622 63.3
Prupe.5G097400 Prunus persica HOM05D004635 ORTHO05D005899 2.7e-211 739.2 623 63.7
Eucgr.E00572 Eucalyptus grandis HOM05D004635 ORTHO05D005899 7.7e-211 737.6 627 62.2
PGSC0003DMG400029793 Solanum tuberosum HOM05D004635 ORTHO05D005899 1.0e-210 737.3 604 65.1
DCAR_000603 Daucus carota HOM05D004635 ORTHO05D005899 2.2e-210 736.1 625 62.2
Cpa.g.sc202.13 Carica papaya HOM05D004635 ORTHO05D005899 4.2e-209 731.9 629 61.5
Sopen08g003860 Solanum pennellii HOM05D004635 ORTHO05D005899 8.0e-208 727.6 602 64.1
FAN18G0535 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.0e-207 727.2 632 62.8
Solyc08g007990.3 Solanum lycopersicum HOM05D004635 ORTHO05D005899 3.0e-207 725.7 604 63.9
FAN04G0694 Fragaria x ananassa HOM05D004635 ORTHO05D005899 4.0e-207 725.3 632 62.3
FvH4_5g23090 Fragaria vesca HOM05D004635 ORTHO05D005899 6.8e-207 724.5 632 62.7
CsaV3_5G002950 Cucumis sativus L. HOM05D004635 ORTHO05D005899 8.8e-207 724.2 630 62.1
Cc08_g14490 Coffea canephora HOM05D004635 ORTHO05D005899 1.5e-206 723.4 638 61.6
FAN13G3179 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.6e-206 722.6 632 62.3
MELO3C005661.2 Cucumis melo HOM05D004635 ORTHO05D005899 4.4e-206 721.8 633 62.1
FAN18G1690 Fragaria x ananassa HOM05D004635 ORTHO05D005899 4.4e-206 721.8 632 62.5
Nn5g27546 Nelumbo nucifera HOM05D004635 ORTHO05D005899 1.7e-205 719.9 625 62.9
PGSC0003DMG400005819 Solanum tuberosum HOM05D004635 ORTHO05D005899 3.7e-205 718.8 604 63.4
TWI81G1014 Tripterygium wilfordii HOM05D004635 ORTHO05D005899 7.0e-204 714.5 637 61.5
Aqoxy5G04278 Aquilegia oxysepala HOM05D004635 ORTHO05D005899 4.5e-203 711.8 636 61.2
Nn1g02763 Nelumbo nucifera HOM05D004635 ORTHO05D005899 3.8e-202 708.8 626 62.5
GSVIVG01019776001 Vitis vinifera HOM05D004635 ORTHO05D005899 8.5e-202 707.6 628 61.0
Phvul.002G288000 Phaseolus vulgaris HOM05D004635 ORTHO05D005899 5.5e-201 704.9 630 58.6
HanXRQChr13g0416481 Helianthus annuus HOM05D004635 ORTHO05D005899 9.5e-201 704.1 635 62.0
MSTRG.13840 Avicennia marina HOM05D004635 ORTHO05D005899 2.8e-200 702.6 631 60.1
Glyma.08G013300 Glycine max HOM05D004635 ORTHO05D005899 3.6e-200 702.2 631 58.8
Lj4g0017456 Lotus japonicus HOM05D004635 ORTHO05D005899 4.7e-200 701.8 632 58.9
SalBow6G1328 Salvia bowleyana HOM05D004635 ORTHO05D005899 4.7e-200 701.8 632 60.8
Haze_08871 Corylus avellana HOM05D004635 ORTHO05D005899 6.1e-200 701.4 645 60.8
VMungo0251G2718 Vigna mungo HOM05D004635 ORTHO05D005899 4.0e-199 698.7 630 58.6
CANSAT78G0227 Cannabis sativa HOM05D004635 ORTHO05D005899 6.8e-199 698.0 632 61.7
ClCG01G002860 Citrullus lanatus HOM05D004635 ORTHO05D005899 2.0e-198 696.4 634 61.0
PSO339G4625 Papaver somniferum HOM05D004635 ORTHO05D005899 1.3e-197 693.7 633 60.2
Hund11485 Selenicereus undatus HOM05D004635 ORTHO05D005899 1.3e-197 693.7 639 59.9
Lsat_1_v5_gn_6_87181 Lactuca sativa HOM05D004635 ORTHO05D005899 3.7e-197 692.2 630 61.3
Cfa012156 Carpinus fangiana HOM05D004635 ORTHO05D005899 1.4e-196 690.3 640 60.5
PSO017G3139 Papaver somniferum HOM05D004635 ORTHO05D005899 3.1e-196 689.1 630 60.3
PSO384G0809 Papaver somniferum HOM05D004635 ORTHO05D005899 4.1e-196 688.7 630 60.5
QL01p003129 Quercus lobata HOM05D004635 ORTHO05D005899 5.4e-196 688.3 654 60.1
PSO170G0760 Papaver somniferum HOM05D004635 ORTHO05D005899 9.2e-196 687.6 630 59.8
arahy.Tifrunner.gnm1.ann1.NB74KP Arachis hypogaea HOM05D004635 ORTHO05D005899 5.9e-195 684.9 625 58.4
AUR62017259 Chenopodium quinoa HOM05D004635 ORTHO05D005899 1.0e-194 684.1 634 61.2
arahy.Tifrunner.gnm1.ann1.Y4HLQF Arachis hypogaea HOM05D004635 ORTHO05D005899 3.8e-194 682.2 623 58.1
THA.LOC104818064 Tarenaya hassleriana HOM05D004635 ORTHO05D005899 4.3e-193 678.7 639 57.1
TPR.G12861 Trifolium pratense HOM05D004635 ORTHO05D005899 1.6e-192 676.8 629 57.2
AUR62010616 Chenopodium quinoa HOM05D004635 ORTHO05D005899 2.1e-192 676.4 643 58.9
Ca_17544_v3 Cicer arietinum L. HOM05D004635 ORTHO05D005899 2.1e-192 676.4 635 57.5
Carub.0007s3429 Capsella rubella HOM05D004635 ORTHO05D005899 6.1e-192 674.9 626 58.8
Aa31LG9G660 Aethionema arabicum HOM05D004635 ORTHO05D005899 1.4e-191 673.7 633 58.8
Medtr8g098490 Medicago truncatula HOM05D004635 ORTHO05D005899 5.2e-191 671.8 629 57.1
Actinidia14552 Actinidia chinensis HOM05D004635 ORTHO05D005899 1.2e-190 670.6 644 62.6
arahy.Tifrunner.gnm1.ann1.BGY2GF Arachis hypogaea HOM05D004635 ORTHO05D005899 1.5e-190 670.2 632 57.6
MBI18_g19087_MAGBIO Magnolia biondii HOM05D004635 ORTHO05D005899 3.4e-190 669.1 647 57.7
AT5G41190 Arabidopsis thaliana HOM05D004635 ORTHO05D005899 5.7e-190 668.3 627 58.4
Lalb_Chr05g0224871 Lupinus albus HOM05D004635 ORTHO05D005899 1.3e-189 667.2 635 57.5
arahy.Tifrunner.gnm1.ann1.MF5MQE Arachis hypogaea HOM05D004635 ORTHO05D005899 6.4e-189 664.8 624 57.1
AL7G48240 Arabidopsis lyrata HOM05D004635 ORTHO05D005899 1.1e-188 664.1 628 57.2
Psat7g034520 Pisum sativum HOM05D004635 ORTHO05D005899 4.7e-184 648.7 597 58.5
EL10Ac1g00317 Beta vulgaris HOM05D004635 ORTHO05D005899 1.4e-183 647.1 640 58.6
Sp7g00720 Schrenkiella parvula HOM05D004635 ORTHO05D005899 1.4e-183 647.1 629 56.4
SpUn0010_0200 Schrenkiella parvula HOM05D004635 ORTHO05D005899 1.4e-183 647.1 629 56.4
EL10Ac5g12781 Beta vulgaris HOM05D004635 ORTHO05D005899 5.2e-183 645.2 634 59.0
FAN08G3353 Fragaria x ananassa HOM05D004635 ORTHO05D005899 5.8e-182 641.7 560 61.8
RcHm_v2.0_Chr7g0179141 Rosa chinensis HOM05D004635 ORTHO05D005899 3.2e-180 636.0 632 56.3
Thhalv10027696m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 6.0e-179 631.7 627 57.1
ATR0064G111 Amborella trichopoda HOM05D004635 ORTHO05D005899 2.3e-178 629.8 637 56.0
C04p48290 Brassica napus HOM05D004635 ORTHO05D005899 3.3e-177 625.9 631 54.8
Sed0015372 Sechium edule HOM05D004635 ORTHO05D005899 9.5e-177 624.4 632 57.3
BcaC02g08976 Brassica carinata HOM05D004635 ORTHO05D005899 1.6e-176 623.6 631 54.5
BolC4t26422H Brassica oleracea HOM05D004635 ORTHO05D005899 1.6e-176 623.6 631 54.5
BraA04t17085Z Brassica rapa HOM05D004635 ORTHO05D005899 5.2e-175 618.6 631 54.4
A04p14360 Brassica napus HOM05D004635 ORTHO05D005899 2.0e-174 616.7 631 54.2
BcaB06g27604 Brassica carinata HOM05D004635 ORTHO05D005899 1.3e-173 614.0 626 55.0
A07p20710 Brassica napus HOM05D004635 ORTHO05D005899 1.5e-169 600.5 633 53.6
BraA07t29762Z Brassica rapa HOM05D004635 ORTHO05D005899 1.1e-167 594.3 632 53.8
Sed0018462 Sechium edule HOM05D004635 ORTHO05D005899 2.2e-165 586.6 527 60.7
CiPaw.11G137400 Carya illinoinensis HOM05D004635 ORTHO05D005899 5.4e-164 582.0 546 59.7
CARHR213190 Cardamine hirsuta HOM05D004635 ORTHO05D005899 3.6e-160 569.3 629 52.8
Glyma.05G206400 Glycine max HOM05D004635 ORTHO05D005899 3.1e-159 566.2 557 56.7
HPP92_020857 Vanilla planifolia HOM05D004635 ORTHO05D005899 1.9e-156 557.0 632 49.8
BcaB02g07904 Brassica carinata HOM05D004635 ORTHO05D005899 6.6e-154 548.5 629 50.9
unitig_37.g12250 Utricularia gibba HOM05D004635 ORTHO05D005899 5.8e-150 535.4 647 49.6
Oeu011058.1 Olea europaea HOM05D004635 ORTHO05D005899 1.7e-149 533.9 637 50.1
SEGI_23350 Sequoiadendron giganteum HOM05D004635 ORTHO05D005899 2.7e-147 526.6 660 47.7
Os02g0114700 Oryza sativa ssp. japonica HOM05D004635 ORTHO05D005899 1.8e-146 523.9 614 49.7
Zm00001eb209610 Zea mays HOM05D004635 ORTHO05D005899 2.9e-141 506.5 631 47.5
CDE06G0591 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 3.8e-141 506.1 535 51.4
BcaC08g44516 Brassica carinata HOM05D004635 ORTHO05D005899 5.1e-138 495.7 620 47.7
Sc01g0009470 Simmondsia chinensis HOM05D004635 ORTHO05D005899 2.1e-131 473.8 459 59.3
Thhalv10009994m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 1.0e-130 471.5 643 44.8
Dinv37658 Davidia involucrata HOM05D004635 ORTHO05D005899 3.2e-124 449.9 337 71.2
RcHm_v2.0_Chr7g0211921 Rosa chinensis HOM05D004635 ORTHO05D005899 4.6e-123 446.0 402 60.9
Zm00001eb229850 Zea mays HOM05D004635 ORTHO05D005899 7.4e-121 438.7 530 48.3
RcHm_v2.0_Chr2g0099081 Rosa chinensis HOM05D004635 ORTHO05D005899 7.2e-116 422.2 540 48.9
Carub.0004s0410 Capsella rubella HOM05D004635 ORTHO05D005899 1.7e-109 401.0 526 46.4
Migut.A00784 Erythranthe guttata HOM05D004635 ORTHO05D005899 1.0e-106 391.7 446 53.1
Pp3c2_34320 Physcomitrium patens HOM05D004635 ORTHO05D005899 2.3e-106 390.6 656 40.5
Dinv37657 Davidia involucrata HOM05D004635 ORTHO05D005899 4.5e-102 376.3 248 76.6
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.8e-95 354.4 384 54.7
FAN28G2416 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.8e-95 354.4 384 54.7
AagrBONN_evm.TU.Sc2ySwM_362.355 Anthoceros agrestis HOM05D004635 ORTHO05D005899 3.8e-93 346.7 638 37.6
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 3.8e-93 346.7 447 47.7
C06p19650 Brassica napus HOM05D004635 ORTHO05D005899 1.2e-91 341.7 443 46.7
SMO171G0086 Selaginella moellendorffii HOM05D004635 ORTHO05D005899 9.2e-79 298.9 591 34.7
BolC6t37157H Brassica oleracea HOM05D004635 ORTHO05D005899 6.6e-77 292.7 283 55.1
BolC6t37158H Brassica oleracea HOM05D004635 ORTHO05D005899 1.8e-74 284.6 244 60.2
BcaC04g18687 Brassica carinata HOM05D004635 ORTHO05D005899 4.3e-68 263.5 380 43.9
RcHm_v2.0_Chr7g0211961 Rosa chinensis HOM05D004635 ORTHO05D005899 1.2e-67 261.9 203 64.0
BolC9t58686H Brassica oleracea HOM05D004635 ORTHO05D005899 4.7e-67 260.0 367 43.9
Mapoly0033s0014 Marchantia polymorpha HOM05D004635 ORTHO05D005899 2.3e-66 257.7 575 34.1
C09p58220 Brassica napus HOM05D000111 ORTHO05D000134 3.4e-65 253.8 380 42.9
CBR_g50931 Chara braunii HOM05D004635 ORTHO05D005899 2.1e-59 234.6 768 29.4
BcaC08g44514 Brassica carinata HOM05D004635 ORTHO05D005899 5.2e-58 229.9 145 69.7
C06p19660 Brassica napus HOM05D004635 ORTHO05D005899 1.1e-42 179.1 155 61.3
MCO14G249 Micromonas commoda HOM05D004635 ORTHO05D005899 1.4e-42 178.7 610 29.7
QL12p018319 Quercus lobata HOM05D004635 ORTHO05D005899 1.3e-40 172.2 407 34.9
PRCOL_00006831 Prasinoderma coloniale HOM05D004635 ORTHO05D005899 7.1e-39 166.4 580 28.4
VMungo1127G2192 Vigna mungo HOM05D004635 ORTHO05D005899 1.0e-37 162.5 165 49.7
Cre01.g031750 Chlamydomonas reinhardtii HOM05D004635 ORTHO05D005899 3.6e-35 154.1 586 27.5
Solyc12g015770.3 Solanum lycopersicum HOM05D000074 ORTHO05D001262 2.7e-22 111.3 60 85.0
BcaC08g44517 Brassica carinata HOM05D004635 ORTHO05D005899 3.0e-21 107.8 270 36.7
Lj2C188G13 Lonicera japonica HOM05D004635 ORTHO05D005899 3.9e-21 107.5 79 65.8
EL10Ac8g19215 Beta vulgaris HOM05D000238 ORTHO05D001043 1.5e-20 105.5 97 57.7
Lj2C188G12 Lonicera japonica HOM05D004635 ORTHO05D005899 2.6e-17 94.7 290 31.0
EL10Ac5g10794 Beta vulgaris HOM05D004635 ORTHO05D005899 3.3e-12 77.8 90 55.6
Sopen12g007660 Solanum pennellii HOM05D000006 ORTHO05D000695 5.9e-09 67.0 43 72.1
arahy.Tifrunner.gnm1.ann1.CCN99U Arachis hypogaea HOM05D004635 ORTHO05D085572 1.6e-06 58.9 47 66.0


User provided reference genes

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