Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018491 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 1.3e-46 189.5 103 100.0
CSS0038290 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 2.1e-41 172.2 103 94.2
CSS0027843 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 4.9e-38 161.0 89 98.9
Actinidia03796 Actinidia chinensis HOM05D007201 ORTHO05D009122 1.3e-19 99.8 89 68.5
Dinv26498 Davidia involucrata HOM05D007201 ORTHO05D009122 6.6e-19 97.4 89 67.4
Solyc12g009390.2 Solanum lycopersicum HOM05D007201 ORTHO05D009122 4.3e-18 94.7 89 68.5
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 5.6e-18 94.4 90 68.9
PGSC0003DMG400002893 Solanum tuberosum HOM05D007201 ORTHO05D009122 5.6e-18 94.4 89 66.3
Rhsim03G0269700 Rhododendron simsii HOM05D007201 ORTHO05D009122 1.3e-17 93.2 89 66.3
Manes.02G222200 Manihot esculenta HOM05D007201 ORTHO05D009122 8.1e-17 90.5 89 50.6
CSS0012149 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 2.6e-15 85.5 103 48.5
CSS0032596 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 2.6e-15 85.5 103 48.5
SGA_v2.0_scaffold21G09583 Striga asiatica HOM05D007201 ORTHO05D009122 5.8e-15 84.3 89 60.7
Lju50A20G7 Lonicera japonica HOM05D007201 ORTHO05D009122 1.3e-14 83.2 89 62.9
COL.COLO4_09000 Corchorus olitorius HOM05D007201 ORTHO05D009122 1.7e-14 82.8 89 59.6
vmacro22702 Vaccinium macrocarpon HOM05D007201 ORTHO05D009122 1.7e-14 82.8 52 71.2
unitig_8.g3542 Utricularia gibba HOM05D007201 ORTHO05D009122 1.1e-13 80.1 55 65.5
Duzib168G1263 Durio zibethinus HOM05D007201 ORTHO05D009122 1.9e-13 79.3 86 59.3
Gorai.012G009900 Gossypium raimondii HOM05D007201 ORTHO05D009122 2.4e-13 79.0 89 57.3
HanXRQChr10g0309261 Helianthus annuus HOM05D007201 ORTHO05D009122 2.4e-13 79.0 48 70.8
Thecc.09G202300 Theobroma cacao HOM05D007201 ORTHO05D009122 2.4e-13 79.0 86 59.3
CANSAT25G2467 Cannabis sativa HOM05D007201 ORTHO05D009122 4.2e-13 78.2 89 46.1
ECA240G0013 Erigeron canadensis HOM05D006383 ORTHO05D007815 4.2e-13 78.2 55 65.5
Nn8g41282 Nelumbo nucifera HOM05D007201 ORTHO05D009122 5.4e-13 77.8 87 62.1
Prupe.1G000600 Prunus persica HOM05D007201 ORTHO05D009122 7.1e-13 77.4 89 59.6
Hund22525 Selenicereus undatus HOM05D007201 ORTHO05D009122 9.3e-13 77.0 54 61.1
TAR626G0209 Trochodendron aralioides HOM05D007201 ORTHO05D009122 1.2e-12 76.6 73 53.4
Cc06_g23490 Coffea canephora HOM05D007201 ORTHO05D009122 2.7e-12 75.5 89 60.7
ECA234G1264 Erigeron canadensis HOM05D007201 ORTHO05D009122 2.7e-12 75.5 47 72.3
Sopen12g004380 Solanum pennellii HOM05D007201 ORTHO05D009122 2.7e-12 75.5 77 68.8
CsaV3_1G044360 Cucumis sativus L. HOM05D007201 ORTHO05D009122 1.7e-11 72.8 86 45.3
Sabra06G0061200 Salix brachista HOM05D007201 ORTHO05D009122 3.9e-11 71.6 44 68.2
Potri.006G081100 Populus trichocarpa HOM05D007201 ORTHO05D009122 5.1e-11 71.2 47 66.0
AUR62027959 Chenopodium quinoa HOM05D007201 ORTHO05D009122 6.6e-11 70.9 50 60.0
Eucgr.C00055 Eucalyptus grandis HOM05D007201 ORTHO05D009122 8.7e-11 70.5 43 72.1
Gohir.D04G008200 Gossypium hirsutum HOM05D007201 ORTHO05D009122 1.1e-10 70.1 46 67.4
Sc10g0006090 Simmondsia chinensis HOM05D007201 ORTHO05D009122 1.1e-10 70.1 82 57.3
HPP92_017373 Vanilla planifolia HOM05D007201 ORTHO05D009122 1.1e-10 70.1 50 66.0
MELO3C010035.2 Cucumis melo HOM05D007201 ORTHO05D009122 1.9e-10 69.3 86 44.2
THA.LOC104809224 Tarenaya hassleriana HOM05D007201 ORTHO05D009122 1.9e-10 69.3 47 68.1
Cpa.g.sc46.114 Carica papaya HOM05D007201 ORTHO05D009122 2.5e-10 68.9 45 71.1
QL11p005700 Quercus lobata HOM05D007201 ORTHO05D009122 4.3e-10 68.2 89 44.9
arahy.Tifrunner.gnm1.ann1.X4HTYC Arachis hypogaea HOM05D007201 ORTHO05D009122 5.6e-10 67.8 43 62.8
Glyma.11G109000 Glycine max HOM05D007201 ORTHO05D009122 7.3e-10 67.4 44 65.9
Glyma.12G016400 Glycine max HOM05D007201 ORTHO05D009122 7.3e-10 67.4 44 65.9
CAN.G1591.3 Capsicum annuum HOM05D007201 ORTHO05D009122 9.6e-10 67.0 74 66.2
MD04G1000600 Malus domestica HOM05D007201 ORTHO05D009122 9.6e-10 67.0 90 56.7
PSO339G5324 Papaver somniferum HOM05D007201 ORTHO05D009122 1.3e-09 66.6 90 56.7
RcHm_v2.0_Chr4g0384751 Rosa chinensis HOM05D007201 ORTHO05D009122 1.3e-09 66.6 80 45.0
PGR142G4385 Punica granatum HOM05D007201 ORTHO05D009122 2.1e-09 65.9 42 61.9
FvH4_4g00131 Fragaria vesca HOM05D007201 ORTHO05D009122 6.2e-09 64.3 41 68.3
FAN22G0406 Fragaria x ananassa HOM05D007201 ORTHO05D009122 6.2e-09 64.3 41 68.3
CiPaw.15G000100 Carya illinoinensis HOM05D007201 ORTHO05D009122 1.1e-08 63.5 96 51.0
FAN12G0236 Fragaria x ananassa HOM05D007201 ORTHO05D009122 1.1e-08 63.5 41 68.3
FAN12G1512 Fragaria x ananassa HOM05D007201 ORTHO05D009122 1.1e-08 63.5 41 68.3
GSVIVG01034266001 Vitis vinifera HOM05D007201 ORTHO05D009122 1.1e-08 63.5 78 61.5
Cfa012872 Carpinus fangiana HOM05D007201 ORTHO05D009122 1.4e-08 63.2 90 52.2
SHI24431 Sapria himalayana HOM05D007201 ORTHO05D009122 1.4e-08 63.2 50 60.0
VMungo1127G0228 Vigna mungo HOM05D007201 ORTHO05D009122 1.4e-08 63.2 53 56.6
Atru.chr7.298 Acer truncatum HOM05D007201 ORTHO05D009122 3.1e-08 62.0 48 56.2
arahy.Tifrunner.gnm1.ann1.G7GJBK Arachis hypogaea HOM05D007201 ORTHO05D009122 3.1e-08 62.0 43 62.8
Psat7g169960 Pisum sativum HOM05D007201 ORTHO05D009122 3.1e-08 62.0 46 63.0
Nitab4.5_0000073g0490 Nicotiana tabacum HOM05D007201 ORTHO05D009122 5.3e-08 61.2 74 60.8
Peaxi162Scf00047g02450 Petunia axillaris HOM05D007201 ORTHO05D009122 5.3e-08 61.2 87 48.3
Sp5g30480 Schrenkiella parvula HOM05D007201 ORTHO05D009122 6.9e-08 60.8 44 65.9
Carub.0002s2218 Capsella rubella HOM05D007201 ORTHO05D009122 1.5e-07 59.7 44 63.6
Haze_21242 Corylus avellana HOM05D007201 ORTHO05D009122 1.5e-07 59.7 90 50.0
Phvul.011G018600 Phaseolus vulgaris HOM05D007201 ORTHO05D009122 1.5e-07 59.7 53 54.7
TPR.G28027 Trifolium pratense HOM05D007201 ORTHO05D009122 1.5e-07 59.7 44 63.6
Lsat_1_v5_gn_5_80700 Lactuca sativa HOM05D007201 ORTHO05D009122 2.6e-07 58.9 47 53.2
Sed0005629 Sechium edule HOM05D007201 ORTHO05D009122 3.4e-07 58.5 99 38.4
AT1G75340 Arabidopsis thaliana HOM05D007201 ORTHO05D009122 4.5e-07 58.2 44 61.4
EL10Ac2g03602 Beta vulgaris HOM05D007201 ORTHO05D009122 4.5e-07 58.2 36 69.4
AL2G35270 Arabidopsis lyrata HOM05D007201 ORTHO05D009122 5.8e-07 57.8 43 62.8
CARHR068690 Cardamine hirsuta HOM05D007201 ORTHO05D009122 5.8e-07 57.8 43 62.8
A07p40900 Brassica napus HOM05D007201 ORTHO05D009122 9.9e-07 57.0 43 60.5
BraA07t31630Z Brassica rapa HOM05D007201 ORTHO05D009122 9.9e-07 57.0 43 60.5
Thhalv10018711m.g Eutrema salsugineum HOM05D007201 ORTHO05D009122 9.9e-07 57.0 44 61.4
SEGI_05170 Sequoiadendron giganteum HOM05D007201 ORTHO05D009122 2.2e-06 55.8 46 54.3
Lj3g0009807 Lotus japonicus HOM05D007201 ORTHO05D009122 3.8e-06 55.1 34 70.6
BcaC08g47362 Brassica carinata HOM05D007201 ORTHO05D009122 4.9e-06 54.7 42 57.1
C06p49330 Brassica napus HOM05D007201 ORTHO05D009122 4.9e-06 54.7 42 57.1
BolC6t39968H Brassica oleracea HOM05D007201 ORTHO05D009122 4.9e-06 54.7 42 57.1


User provided reference genes

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