Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018271 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 2612.0 1279 100.0
CSS0002284 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 2553.5 1291 97.5
Actinidia15577 Actinidia chinensis HOM05D004874 ORTHO05D006796 0.0e+00 2203.7 1274 84.4
Dinv19497 Davidia involucrata HOM05D004874 ORTHO05D006796 0.0e+00 2166.0 1277 83.6
Rhsim10G0151300 Rhododendron simsii HOM05D004874 ORTHO05D006796 0.0e+00 2146.3 1276 82.4
GSVIVG01022217001 Vitis vinifera HOM05D004874 ORTHO05D006796 0.0e+00 2011.9 1277 77.1
Ciclev10024728m.g Citrus clementina HOM05D004874 ORTHO05D006796 0.0e+00 1988.0 1276 76.0
Thecc.01G111200 Theobroma cacao HOM05D004874 ORTHO05D006796 0.0e+00 1983.0 1278 75.1
Atru.chr4.387 Acer truncatum HOM05D004874 ORTHO05D006796 0.0e+00 1969.9 1276 75.5
Gorai.011G111800 Gossypium raimondii HOM05D004874 ORTHO05D006796 0.0e+00 1962.6 1278 74.6
Gohir.D10G102100 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1956.0 1278 74.5
Manes.13G077640 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1954.9 1280 74.8
Gohir.A10G086600 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1949.5 1278 74.3
Potri.005G083800 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1948.7 1276 74.5
QL06p032401 Quercus lobata HOM05D004874 ORTHO05D006796 0.0e+00 1947.9 1274 74.1
CANSAT01G0647 Cannabis sativa HOM05D004874 ORTHO05D006796 0.0e+00 1932.9 1277 72.7
Prupe.6G174100 Prunus persica HOM05D004874 ORTHO05D006796 0.0e+00 1932.5 1277 74.5
Sabra05G0068900 Salix brachista HOM05D004874 ORTHO05D006796 0.0e+00 1931.8 1283 73.5
Oeu028379.4 Olea europaea HOM05D004874 ORTHO05D006796 0.0e+00 1924.4 1374 69.2
MD15G1333600 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1921.4 1277 73.7
TWI74G1507 Tripterygium wilfordii HOM05D004874 ORTHO05D006796 0.0e+00 1919.8 1277 72.6
Potri.007G081900 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1918.3 1274 73.7
Cc07_g16070 Coffea canephora HOM05D004874 ORTHO05D006796 0.0e+00 1915.2 1275 74.0
Peaxi162Scf00323g00112 Petunia axillaris HOM05D004874 ORTHO05D006796 0.0e+00 1911.3 1245 75.6
Glyma.06G145900 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1908.3 1275 71.7
Phvul.009G140100 Phaseolus vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1906.0 1276 71.4
CAN.G1728.1 Capsicum annuum HOM05D004874 ORTHO05D006796 0.0e+00 1905.2 1275 73.6
Sopen04g023580 Solanum pennellii HOM05D004874 ORTHO05D006796 0.0e+00 1893.6 1279 73.2
Nn5g28922 Nelumbo nucifera HOM05D004874 ORTHO05D006796 0.0e+00 1893.2 1275 72.3
Glyma.04G220000 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1891.3 1275 71.3
Solyc04g054140.4 Solanum lycopersicum HOM05D004874 ORTHO05D006796 0.0e+00 1890.2 1284 73.0
RcHm_v2.0_Chr2g0116231 Rosa chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1889.8 1276 71.8
VMungo1309G2704 Vigna mungo HOM05D004874 ORTHO05D006796 0.0e+00 1884.8 1277 70.3
ECA238G3208 Erigeron canadensis HOM05D004874 ORTHO05D006796 0.0e+00 1883.2 1277 70.6
HanXRQChr14g0446191 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1876.7 1274 70.7
FvH4_1g22150 Fragaria vesca HOM05D004874 ORTHO05D006796 0.0e+00 1872.1 1279 71.4
Haze_25029 Corylus avellana HOM05D004874 ORTHO05D006796 0.0e+00 1870.9 1241 74.0
Lj1g0000337 Lotus japonicus HOM05D004874 ORTHO05D006796 0.0e+00 1860.9 1278 70.0
Migut.H02425 Erythranthe guttata HOM05D004874 ORTHO05D006796 0.0e+00 1858.2 1280 72.1
Lsat_1_v5_gn_2_65401 Lactuca sativa HOM05D004874 ORTHO05D006796 0.0e+00 1857.0 1277 70.8
FAN23G3027 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1856.3 1279 70.9
FAN26G2351 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1855.5 1279 71.1
FAN28G2703 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1855.5 1279 70.9
Ca_16889_v3 Cicer arietinum L. HOM05D004874 ORTHO05D006796 0.0e+00 1852.8 1278 70.5
Medtr3g094770 Medicago truncatula HOM05D004874 ORTHO05D006796 0.0e+00 1848.9 1278 70.0
FAN19G0866 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1845.5 1305 69.7
PSO675G8458 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1845.1 1274 71.1
HanXRQChr10g0295251 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1844.7 1274 69.7
PSO541G0735 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1841.6 1274 70.6
CsaV3_6G042450 Cucumis sativus L. HOM05D004874 ORTHO05D006796 0.0e+00 1838.2 1277 70.1
TPR.G23744 Trifolium pratense HOM05D004874 ORTHO05D006796 0.0e+00 1838.2 1277 69.4
Psat5g065960 Pisum sativum HOM05D004874 ORTHO05D006796 0.0e+00 1835.1 1277 69.0
Manes.12G141800 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1832.4 1274 70.2
ClCG01G016180 Citrullus lanatus HOM05D004874 ORTHO05D006796 0.0e+00 1820.4 1275 69.6
Lalb_Chr11g0068041 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1818.1 1280 69.0
Aqoxy6G00493 Aquilegia oxysepala HOM05D004874 ORTHO05D006796 0.0e+00 1815.8 1289 69.2
arahy.Tifrunner.gnm1.ann1.ZQBN5H Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1810.8 1277 68.8
arahy.Tifrunner.gnm1.ann1.M2IALY Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1806.6 1277 68.6
Eucgr.H04838 Eucalyptus grandis HOM05D004874 ORTHO05D006796 0.0e+00 1805.4 1276 69.7
EL10Ac6g14746 Beta vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1779.6 1357 64.0
THA.LOC104804146 Tarenaya hassleriana HOM05D004874 ORTHO05D006796 0.0e+00 1774.6 1273 68.6
SGA_v2.0_scaffold2G01299 Striga asiatica HOM05D004874 ORTHO05D006796 0.0e+00 1759.2 1364 65.6
SalBow6G4347 Salvia bowleyana HOM05D004874 ORTHO05D006796 0.0e+00 1749.6 1183 72.4
AUR62003312 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1746.1 1279 65.9
DCAR_014257 Daucus carota HOM05D004874 ORTHO05D006796 0.0e+00 1745.7 1271 68.8
AUR62016271 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1737.6 1279 65.7
Sed0015455 Sechium edule HOM05D004874 ORTHO05D006796 0.0e+00 1727.2 1275 66.7
TAR628G0415 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1726.8 1192 72.5
Carub.0004s0115 Capsella rubella HOM05D004874 ORTHO05D006796 0.0e+00 1724.1 1280 66.2
Hund19660 Selenicereus undatus HOM05D004874 ORTHO05D006796 0.0e+00 1717.6 1225 68.7
AL4G11330 Arabidopsis lyrata HOM05D004874 ORTHO05D006796 0.0e+00 1714.5 1276 66.2
AT2G22010 Arabidopsis thaliana HOM05D004874 ORTHO05D006796 0.0e+00 1713.7 1279 66.1
CARHR113090 Cardamine hirsuta HOM05D004874 ORTHO05D006796 0.0e+00 1713.0 1277 66.0
BcaC07g41106 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1712.6 1279 66.3
PGR102G1404 Punica granatum HOM05D004874 ORTHO05D006796 0.0e+00 1710.3 1272 66.7
C08p41080 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1708.7 1283 65.9
Sp4g01070 Schrenkiella parvula HOM05D004874 ORTHO05D006796 0.0e+00 1706.4 1276 65.9
MELO3C007488.2 Cucumis melo HOM05D004874 ORTHO05D006796 0.0e+00 1705.3 1286 65.9
BolC8t51674H Brassica oleracea HOM05D004874 ORTHO05D006796 0.0e+00 1702.2 1289 65.6
A09p57840 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1700.6 1268 66.5
BcaB08g35028 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1696.4 1279 65.8
Lalb_Chr13g0296191 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1690.2 1277 64.6
BraA09t41177Z Brassica rapa HOM05D004874 ORTHO05D006796 0.0e+00 1689.1 1274 66.1
Thhalv10000015m.g Eutrema salsugineum HOM05D004874 ORTHO05D006796 0.0e+00 1682.9 1273 65.9
ATR0564G436 Amborella trichopoda HOM05D004874 ORTHO05D006796 0.0e+00 1655.2 1274 63.9
Nitab4.5_0000156g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 0.0e+00 1640.2 1045 77.0
TAR376G0110 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1618.6 1043 75.6
Aa31LG7G14640 Aethionema arabicum HOM05D004874 ORTHO05D006796 0.0e+00 1595.5 1278 63.1
PGSC0003DMG400012951 Solanum tuberosum HOM05D004874 ORTHO05D006796 0.0e+00 1580.8 1051 74.0
MD01G1017400 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1550.0 1036 73.9
Zm00001eb328050 Zea mays HOM05D004874 ORTHO05D006796 0.0e+00 1518.8 1268 59.3
CDE07G0820 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1508.8 1276 59.3
Duzib147G0760 Durio zibethinus HOM05D004874 ORTHO05D006796 0.0e+00 1469.9 1278 59.9
SEGI_33214 Sequoiadendron giganteum HOM05D004874 ORTHO05D006796 0.0e+00 1410.6 1271 56.2
unitig_899.g14600 Utricularia gibba HOM05D004874 ORTHO05D006796 0.0e+00 1378.2 1191 59.9
COL.COLO4_11028 Corchorus olitorius HOM05D004874 ORTHO05D006796 0.0e+00 1355.1 1277 56.8
CDE04G1796 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1345.5 1217 56.5
Lj2C562G3 Lonicera japonica HOM05D004874 ORTHO05D006796 0.0e+00 1343.6 831 78.5
vmacro12908 Vaccinium macrocarpon HOM05D004874 ORTHO05D006796 0.0e+00 1279.2 777 79.7
FAN01G2715 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1236.5 942 65.3
CiPaw.04G092800 Carya illinoinensis HOM05D004874 ORTHO05D006796 0.0e+00 1228.8 808 76.0
Ah.02g124400 Amaranthus hybridus HOM05D004874 ORTHO05D006796 0.0e+00 1211.1 877 66.0
Cpa.g.sc196.7 Carica papaya HOM05D004874 ORTHO05D006796 0.0e+00 1196.8 831 69.8
Oeu030684.1 Olea europaea HOM05D004874 ORTHO05D006796 0.0e+00 1184.1 760 75.3
FAN06G3019 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1163.3 943 62.9
MBI02_g13022_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 0.0e+00 1152.1 835 67.4
Mapoly0047s0138 Marchantia polymorpha HOM05D004874 ORTHO05D006796 0.0e+00 1144.4 1331 48.2
SMO143G0116 Selaginella moellendorffii HOM05D004874 ORTHO05D006796 0.0e+00 1117.4 1198 48.8
Pp3c2_2760 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1107.8 1324 46.4
Pp3c1_33900 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1102.0 1291 46.4
FAN06G4447 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1100.9 943 60.4
MSTRG.2539 Avicennia marina HOM05D004874 ORTHO05D006796 0.0e+00 1080.1 760 70.9
Pp3c17_14550 Physcomitrium patens HOM05D004874 ORTHO05D006796 8.1e-308 1060.8 1342 45.1
AagrBONN_evm.TU.Sc2ySwM_228.911 Anthoceros agrestis HOM05D004874 ORTHO05D006796 8.7e-302 1040.8 1154 49.2
FAN10G0201 Fragaria x ananassa HOM05D004874 ORTHO05D006796 2.9e-297 1025.8 693 72.0
CBR_g4334 Chara braunii HOM05D004874 ORTHO05D006796 7.7e-234 815.1 1462 36.0
HPP92_016848 Vanilla planifolia HOM05D004874 ORTHO05D006796 6.5e-233 812.0 622 64.8
FvH4_7g04730 Fragaria vesca HOM05D004874 ORTHO05D006796 9.2e-227 791.6 552 69.4
Oeu030685.1 Olea europaea HOM05D004874 ORTHO05D006796 4.3e-216 756.1 501 71.5
FAN03G2613 Fragaria x ananassa HOM05D004874 ORTHO05D006796 1.2e-210 738.0 503 72.0
HPP92_016847 Vanilla planifolia HOM05D004874 ORTHO05D006796 1.2e-210 738.0 614 56.8
Lj2A562T49 Lonicera japonica HOM05D004874 ORTHO05D006796 3.4e-205 719.9 468 76.7
Cc07_g14920 Coffea canephora HOM05D004874 ORTHO05D006796 2.6e-144 517.7 396 67.4
MBI02_g44126_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 8.5e-140 502.7 361 71.5
Cpa.g.sc196.6 Carica papaya HOM05D004874 ORTHO05D006796 7.4e-136 489.6 320 74.7
Ah.02g124390 Amaranthus hybridus HOM05D004874 ORTHO05D006796 3.6e-130 470.7 333 70.3
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 3.3e-99 367.9 1395 26.5
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 3.6e-90 337.8 1284 25.1
Os07g0626900 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 2.1e-82 312.0 264 59.5
Nitab4.5_0010573g0010 Nicotiana tabacum HOM05D004874 ORTHO05D006796 1.0e-52 213.4 148 68.9
Sabra07G0068700 Salix brachista HOM05D004874 ORTHO05D006796 1.0e-52 213.4 308 43.2
FvH4_7g04731 Fragaria vesca HOM05D004874 ORTHO05D006796 1.4e-49 203.0 129 75.2
Solyc05g055570.3 Solanum lycopersicum HOM05D004874 ORTHO05D014502 1.0e-31 143.7 101 73.3
HanXRQChr11g0324541 Helianthus annuus HOM05D004874 ORTHO05D006796 2.8e-26 125.6 78 71.8
Zm00001eb137300 Zea mays HOM05D004874 ORTHO05D006796 8.5e-15 87.4 68 58.8
Nitab4.5_0000904g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 1.5e-14 86.7 46 89.1
unitig_899.g14599 Utricularia gibba HOM05D002815 ORTHO05D025745 3.6e-13 82.0 71 57.7
BcaC09g48952 Brassica carinata HOM05D004874 ORTHO05D014502 3.3e-11 75.5 53 67.9
HanXRQChr11g0341101 Helianthus annuus HOM05D004874 ORTHO05D006796 4.4e-11 75.1 50 68.0
BcaC06g36156 Brassica carinata HOM05D004874 ORTHO05D014502 7.5e-11 74.3 53 66.0
HanXRQChr12g0385291 Helianthus annuus HOM05D004874 ORTHO05D006796 6.3e-10 71.2 39 84.6
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 1.1e-09 70.5 95 37.9
MCO11G679 Micromonas commoda HOM05D000032 ORTHO05D028824 1.4e-09 70.1 151 28.5
BcaC04g21885 Brassica carinata HOM05D004874 ORTHO05D014502 1.8e-09 69.7 56 58.9
C07p07140 Brassica napus HOM05D004874 ORTHO05D014502 1.6e-08 66.6 46 67.4
A01p36370 Brassica napus HOM05D004874 ORTHO05D014502 2.7e-08 65.9 46 67.4
A02p42430 Brassica napus HOM05D004874 ORTHO05D014502 2.7e-08 65.9 46 67.4
C01p44130 Brassica napus HOM05D004874 ORTHO05D014502 2.7e-08 65.9 46 67.4
BraA01t04208Z Brassica rapa HOM05D004874 ORTHO05D014502 2.7e-08 65.9 46 67.4
BraA02t09174Z Brassica rapa HOM05D004874 ORTHO05D014502 2.7e-08 65.9 46 67.4
C09p26200 Brassica napus HOM05D004874 ORTHO05D014502 3.5e-08 65.5 46 67.4
BolC9t55523H Brassica oleracea HOM05D004874 ORTHO05D014502 3.5e-08 65.5 46 67.4
BolC7t41133H Brassica oleracea HOM05D004874 ORTHO05D014502 5.9e-08 64.7 46 65.2
Zm00001eb182000 Zea mays HOM05D003906 ORTHO05D004776 5.9e-08 64.7 118 33.1
Cre09.g387801 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 1.3e-07 63.5 135 33.3
PRCOL_00002342 Prasinoderma coloniale HOM05D003906 ORTHO05D004776 1.3e-07 63.5 94 39.4
Cre01.g007150 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 2.2e-07 62.8 96 37.5
Os03g0428000 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 2.9e-07 62.4 78 46.2
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 1.1e-06 60.5 187 30.5
CBR_g30766 Chara braunii HOM05D000019 ORTHO05D000048 1.9e-06 59.7 88 33.0
Os02g0556600 Oryza sativa ssp. japonica HOM05D003906 ORTHO05D004776 7.2e-06 57.8 118 31.4
Zm00001eb243840 Zea mays HOM05D003906 ORTHO05D004776 7.2e-06 57.8 118 30.5


User provided reference genes

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