Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017399 Camellia sinensis var. sinensis HOM05D005238 ORTHO05D006337 4.9e-105 385.2 315 100.0
CSS0024118 Camellia sinensis var. sinensis HOM05D005238 ORTHO05D006337 2.7e-87 326.2 302 88.1
vmacro11663 Vaccinium macrocarpon HOM05D005238 ORTHO05D006337 8.2e-52 208.4 182 76.9
Oeu052006.1 Olea europaea HOM05D005238 ORTHO05D006337 7.6e-50 201.8 205 68.3
TAR627G0595 Trochodendron aralioides HOM05D005238 ORTHO05D006337 1.3e-46 191.0 295 70.2
Gorai.013G178100 Gossypium raimondii HOM05D005238 ORTHO05D006337 7.4e-45 185.3 295 61.7
Manes.06G171800 Manihot esculenta HOM05D005238 ORTHO05D006337 7.4e-45 185.3 298 60.1
Oeu003828.2 Olea europaea HOM05D005238 ORTHO05D006337 5.3e-43 179.1 190 67.4
Dinv19619 Davidia involucrata HOM05D005238 ORTHO05D006337 3.4e-42 176.4 311 68.5
ECA240G2789 Erigeron canadensis HOM05D005238 ORTHO05D006337 3.4e-42 176.4 283 64.7
Dinv42511 Davidia involucrata HOM05D005238 ORTHO05D006337 1.3e-41 174.5 192 75.0
Sabra11G0127900 Salix brachista HOM05D001622 ORTHO05D007320 2.2e-41 173.7 301 57.5
Lj8A188G51 Lonicera japonica HOM05D005238 ORTHO05D006337 1.4e-40 171.0 123 72.4
Cc05_g16060 Coffea canephora HOM05D005238 ORTHO05D006337 2.5e-40 170.2 298 58.4
Hma1.2p1_0334F.1_g128770 Hydrangea macrophylla HOM05D005238 ORTHO05D006337 2.5e-40 170.2 297 63.0
Manes.14G016200 Manihot esculenta HOM05D005238 ORTHO05D006337 1.6e-39 167.5 297 69.0
Duzib268G1788 Durio zibethinus HOM05D005238 ORTHO05D006337 2.1e-39 167.2 119 71.4
Potri.011G143100 Populus trichocarpa HOM05D005238 ORTHO05D006337 6.1e-39 165.6 294 61.2
Actinidia07350 Actinidia chinensis HOM05D005238 ORTHO05D006337 1.8e-38 164.1 284 62.3
CARHR017080 Cardamine hirsuta HOM05D005238 ORTHO05D006337 2.3e-38 163.7 295 56.3
Hma1.2p1_0637F.1_g193540 Hydrangea macrophylla HOM05D005238 ORTHO05D006337 3.0e-38 163.3 197 65.5
Gohir.D13G157300 Gossypium hirsutum HOM05D005238 ORTHO05D006337 1.1e-37 161.4 287 62.7
SalBow8G4928 Salvia bowleyana HOM05D005238 ORTHO05D006337 1.5e-37 161.0 202 58.4
Eucgr.F03179 Eucalyptus grandis HOM05D005238 ORTHO05D006337 4.3e-37 159.5 305 59.3
Cpa.g.sc10.47 Carica papaya HOM05D005238 ORTHO05D006337 9.7e-37 158.3 294 63.9
Duzib187G0607 Durio zibethinus HOM05D005238 ORTHO05D006337 9.7e-37 158.3 124 66.1
TPR.G9757 Trifolium pratense HOM05D005238 ORTHO05D006337 9.7e-37 158.3 132 65.2
GSVIVG01020424001 Vitis vinifera HOM05D005238 ORTHO05D006337 1.3e-36 157.9 197 69.0
Rhsim06G0238800 Rhododendron simsii HOM05D005238 ORTHO05D006337 2.2e-36 157.1 97 80.4
MBI16_g40051_MAGBIO Magnolia biondii HOM05D005238 ORTHO05D006337 1.1e-35 154.8 110 70.9
C08p17490 Brassica napus HOM05D005238 ORTHO05D006337 1.4e-35 154.5 292 55.8
Atru.chr2.1794 Acer truncatum HOM05D005238 ORTHO05D006337 3.1e-35 153.3 300 59.0
BcaC07g38806 Brassica carinata HOM05D005238 ORTHO05D006337 4.1e-35 152.9 288 56.6
Gohir.D01G026750 Gossypium hirsutum HOM05D005238 ORTHO05D006337 5.3e-35 152.5 133 63.2
Gohir.D01G026800 Gossypium hirsutum HOM05D005238 ORTHO05D006337 5.3e-35 152.5 133 63.2
CiPaw.12G006900 Carya illinoinensis HOM05D005238 ORTHO05D006337 9.1e-35 151.8 117 67.5
CDE01G0718 Ceratophyllum demersum HOM05D005238 ORTHO05D006337 9.1e-35 151.8 128 64.8
Duzib213G1032 Durio zibethinus HOM05D005238 ORTHO05D006337 1.2e-34 151.4 297 61.6
FAN16G2086 Fragaria x ananassa HOM05D005238 ORTHO05D006337 1.5e-34 151.0 296 56.4
SGA_v2.0_scaffold186G40218 Striga asiatica HOM05D005238 ORTHO05D006337 1.5e-34 151.0 129 62.8
Haze_24974 Corylus avellana HOM05D005238 ORTHO05D006337 2.0e-34 150.6 117 68.4
Lj3g0001441 Lotus japonicus HOM05D005238 ORTHO05D006337 2.6e-34 150.2 296 54.7
PSO017G0328 Papaver somniferum HOM05D005238 ORTHO05D006337 2.6e-34 150.2 132 60.6
PSO170G0319 Papaver somniferum HOM05D005238 ORTHO05D006337 2.6e-34 150.2 132 60.6
BcaB03g13039 Brassica carinata HOM05D000001 ORTHO05D000003 3.4e-34 149.8 198 64.6
BcaC05g25524 Brassica carinata HOM05D005238 ORTHO05D006337 3.4e-34 149.8 296 58.4
Cfa002698 Carpinus fangiana HOM05D005238 ORTHO05D006337 4.5e-34 149.4 117 67.5
FvH4_3g15770 Fragaria vesca HOM05D005238 ORTHO05D006337 4.5e-34 149.4 320 43.1
Aa31LG7G1130 Aethionema arabicum HOM05D005238 ORTHO05D006337 1.0e-33 148.3 296 64.5
A08p31340 Brassica napus HOM05D000001 ORTHO05D000003 1.0e-33 148.3 126 63.5
FAN11G0128 Fragaria x ananassa HOM05D006308 ORTHO05D007820 1.3e-33 147.9 319 42.9
BolC8t49374H Brassica oleracea HOM05D005238 ORTHO05D006337 1.7e-33 147.5 292 54.8
Ca_03677_v3 Cicer arietinum L. HOM05D005238 ORTHO05D006337 2.2e-33 147.1 112 66.1
Gohir.A13G153000 Gossypium hirsutum HOM05D005238 ORTHO05D006337 2.2e-33 147.1 297 64.3
VMungo1080G1161 Vigna mungo HOM05D005238 ORTHO05D006337 3.8e-33 146.4 311 56.6
MSTRG.7059 Avicennia marina HOM05D005238 ORTHO05D006337 5.0e-33 146.0 303 53.5
Nn6g31521 Nelumbo nucifera HOM05D005238 ORTHO05D006337 1.4e-32 144.4 297 59.9
Nitab4.5_0008429g0030 Nicotiana tabacum HOM05D005238 ORTHO05D006337 1.9e-32 144.1 308 49.7
C05p14890 Brassica napus HOM05D005238 ORTHO05D006337 2.5e-32 143.7 295 57.3
BolC5t30204H Brassica oleracea HOM05D005238 ORTHO05D006337 2.5e-32 143.7 295 57.3
HanXRQChr03g0071621 Helianthus annuus HOM05D005238 ORTHO05D006337 3.2e-32 143.3 112 67.9
TWI39G0564 Tripterygium wilfordii HOM05D005238 ORTHO05D006337 3.2e-32 143.3 118 66.9
QL04p073782 Quercus lobata HOM05D005238 ORTHO05D006337 4.2e-32 142.9 112 65.2
Medtr2g069490 Medicago truncatula HOM05D005238 ORTHO05D006337 5.5e-32 142.5 217 59.4
Phvul.005G056900 Phaseolus vulgaris HOM05D005238 ORTHO05D006337 7.2e-32 142.1 305 54.8
Thecc.07G152800 Theobroma cacao HOM05D005238 ORTHO05D006337 9.4e-32 141.7 296 58.8
Psat1g011080 Pisum sativum HOM05D005238 ORTHO05D006337 1.2e-31 141.4 217 57.6
MD10G1202400 Malus domestica HOM05D005238 ORTHO05D006337 1.6e-31 141.0 112 67.9
Carub.0001s1636 Capsella rubella HOM05D005238 ORTHO05D006337 2.7e-31 140.2 296 61.8
CANSAT80G2747 Cannabis sativa HOM05D005238 ORTHO05D006337 3.6e-31 139.8 99 72.7
FAN21G1113 Fragaria x ananassa HOM05D005238 ORTHO05D006337 3.6e-31 139.8 132 61.4
Sp1g14750 Schrenkiella parvula HOM05D005238 ORTHO05D006337 3.6e-31 139.8 283 64.3
unitig_748.g7636 Utricularia gibba HOM05D005238 ORTHO05D006337 3.6e-31 139.8 306 55.6
Ciclev10020284m.g Citrus clementina HOM05D005238 ORTHO05D006337 4.7e-31 139.4 112 67.0
Migut.M01557 Erythranthe guttata HOM05D005238 ORTHO05D006337 4.7e-31 139.4 212 56.6
Glyma.15G255400 Glycine max HOM05D005238 ORTHO05D006337 4.7e-31 139.4 296 59.5
TWI38G1616 Tripterygium wilfordii HOM05D005238 ORTHO05D006337 1.0e-30 138.3 287 63.8
CDE12G0696 Ceratophyllum demersum HOM05D005238 ORTHO05D006337 1.4e-30 137.9 114 65.8
Prupe.4G139800 Prunus persica HOM05D005238 ORTHO05D006337 1.4e-30 137.9 112 65.2
Peaxi162Scf00018g00105 Petunia axillaris HOM05D005238 ORTHO05D006337 1.8e-30 137.5 123 61.8
Lsat_1_v5_gn_7_65541 Lactuca sativa HOM05D005238 ORTHO05D006337 3.9e-30 136.3 100 70.0
AL1G28770 Arabidopsis lyrata HOM05D005238 ORTHO05D006337 5.1e-30 136.0 112 62.5
Glyma.08G172000 Glycine max HOM05D005238 ORTHO05D006337 5.1e-30 136.0 296 59.1
Solyc10g005590.4 Solanum lycopersicum HOM05D005238 ORTHO05D006337 5.1e-30 136.0 102 64.7
Sopen10g001560 Solanum pennellii HOM05D005238 ORTHO05D006337 5.1e-30 136.0 102 64.7
SEGI_03141 Sequoiadendron giganteum HOM05D005238 ORTHO05D006337 6.7e-30 135.6 130 59.2
PGSC0003DMG400011240 Solanum tuberosum HOM05D005238 ORTHO05D006337 1.1e-29 134.8 102 63.7
AT1G16610 Arabidopsis thaliana HOM05D005238 ORTHO05D006337 2.6e-29 133.7 115 66.1
BraA08t35057Z Brassica rapa HOM05D000001 ORTHO05D000003 5.7e-29 132.5 299 48.5
FAN25G0513 Fragaria x ananassa HOM05D006308 ORTHO05D007820 7.4e-29 132.1 113 64.6
BraA09t41454Z Brassica rapa HOM05D005238 ORTHO05D006337 1.3e-28 131.3 307 54.7
Lalb_Chr20g0108761 Lupinus albus HOM05D005238 ORTHO05D006337 1.7e-28 131.0 292 62.0
Lalb_Chr25g0284971 Lupinus albus HOM05D005238 ORTHO05D006337 3.7e-28 129.8 199 57.8
HPP92_011420 Vanilla planifolia HOM05D005238 ORTHO05D006337 3.7e-28 129.8 112 61.6
Gorai.002G036200 Gossypium raimondii HOM05D005238 ORTHO05D006337 8.2e-28 128.6 304 56.2
C08p44400 Brassica napus HOM05D005238 ORTHO05D006337 1.4e-27 127.9 208 63.0
RcHm_v2.0_Chr5g0026571 Rosa chinensis HOM05D005238 ORTHO05D006337 1.4e-27 127.9 200 54.0
MELO3C026965.2 Cucumis melo HOM05D005238 ORTHO05D006337 2.4e-27 127.1 113 61.9
ATR1136G058 Amborella trichopoda HOM05D005238 ORTHO05D006337 3.1e-27 126.7 287 56.4
THA.LOC104813616 Tarenaya hassleriana HOM05D005238 ORTHO05D006337 5.3e-27 125.9 311 53.7
AUR62039165 Chenopodium quinoa HOM05D005238 ORTHO05D006337 9.1e-27 125.2 312 58.3
BcaB07g32526 Brassica carinata HOM05D002708 ORTHO05D006337 1.5e-26 124.4 105 62.9
A06p12590 Brassica napus HOM05D005238 ORTHO05D006337 3.4e-26 123.2 295 56.9
BraA06t24421Z Brassica rapa HOM05D005238 ORTHO05D006337 3.4e-26 123.2 295 56.9
arahy.Tifrunner.gnm1.ann1.7NR7Q4 Arachis hypogaea HOM05D005238 ORTHO05D006337 7.7e-26 122.1 335 60.3
DCAR_013738 Daucus carota HOM05D005238 ORTHO05D006337 1.3e-25 121.3 290 48.6
A09p60810 Brassica napus HOM05D005238 ORTHO05D006337 1.7e-25 120.9 208 61.5
DCAR_016821 Daucus carota HOM05D005238 ORTHO05D006337 2.2e-25 120.6 296 53.0
PSO782G5275 Papaver somniferum HOM05D005238 ORTHO05D006337 3.8e-25 119.8 327 55.4
Aqoxy6G00105 Aquilegia oxysepala HOM05D005238 ORTHO05D006337 6.5e-25 119.0 113 56.6
arahy.Tifrunner.gnm1.ann1.K2PXHZ Arachis hypogaea HOM05D005238 ORTHO05D006337 1.1e-24 118.2 343 58.3
CsaV3_4G031880 Cucumis sativus L. HOM05D005238 ORTHO05D006337 1.4e-24 117.9 91 62.6
SEGI_37868 Sequoiadendron giganteum HOM05D005238 ORTHO05D006337 1.4e-24 117.9 308 54.9
ClCG11G016430 Citrullus lanatus HOM05D005238 ORTHO05D006337 2.5e-24 117.1 91 62.6
PSO170G6647 Papaver somniferum HOM05D005238 ORTHO05D006337 2.5e-24 117.1 310 55.2
BolC8t51981H Brassica oleracea HOM05D005238 ORTHO05D006337 4.2e-24 116.3 208 61.1
AUR62043127 Chenopodium quinoa HOM05D005238 ORTHO05D006337 1.2e-23 114.8 132 54.5
Os05g0105900 Oryza sativa ssp. japonica HOM05D005238 ORTHO05D006337 2.1e-23 114.0 285 58.6
EL10Ac2g03318 Beta vulgaris HOM05D005238 ORTHO05D006337 2.7e-23 113.6 114 57.9
Pp3c8_3970 Physcomitrium patens HOM05D005238 ORTHO05D006337 4.7e-23 112.8 198 56.6
Sed0003933 Sechium edule HOM05D005238 ORTHO05D006337 1.0e-22 111.7 82 64.6
Zm00001eb362580 Zea mays HOM05D005238 ORTHO05D006337 1.0e-22 111.7 102 57.8
Os01g0959000 Oryza sativa ssp. japonica HOM05D005238 ORTHO05D006337 3.9e-22 109.8 83 66.3
Zm00001eb140450 Zea mays HOM05D005238 ORTHO05D006337 1.1e-21 108.2 95 57.9
Gohir.A01G039100 Gossypium hirsutum HOM05D005238 ORTHO05D006337 4.8e-20 102.8 304 52.6
Pp3c12_22790 Physcomitrium patens HOM05D005238 ORTHO05D006337 1.4e-19 101.3 110 56.4
PGR031G1019 Punica granatum HOM05D005238 ORTHO05D006337 5.3e-19 99.4 292 52.4
Mapoly0011s0143 Marchantia polymorpha HOM05D005238 ORTHO05D006337 9.1e-19 98.6 199 53.3
HPP92_027055 Vanilla planifolia HOM05D005238 ORTHO05D006337 3.8e-17 93.2 116 50.0
PSO063G3689 Papaver somniferum HOM05D005238 ORTHO05D006337 1.5e-16 91.3 82 58.5
Pp3c3_28550 Physcomitrium patens HOM05D005238 ORTHO05D006337 2.5e-16 90.5 112 50.9
Aa31LG4G1900 Aethionema arabicum HOM05D005238 ORTHO05D006337 3.2e-16 90.1 102 53.9
Sc06g0001540 Simmondsia chinensis HOM05D005238 ORTHO05D006337 9.4e-16 88.6 114 47.4
Thhalv10007778m.g Eutrema salsugineum HOM05D005238 ORTHO05D006337 1.2e-15 88.2 297 53.9
SMO364G0823 Selaginella moellendorffii HOM05D005238 ORTHO05D006337 5.7e-13 79.3 122 45.9
CAN.G24.9 Capsicum annuum HOM05D005238 ORTHO05D006337 7.5e-13 79.0 72 56.9
SMO271G0048 Selaginella moellendorffii HOM05D005238 ORTHO05D006337 3.7e-12 76.6 126 43.7
SGA_v2.0_scaffold7G03583 Striga asiatica HOM05D005238 ORTHO05D006337 2.4e-11 73.9 81 58.0
Nitab4.5_0000611g0070 Nicotiana tabacum HOM05D005238 ORTHO05D006337 8.5e-09 65.5 47 63.8
PSO478G0211 Papaver somniferum HOM05D005238 ORTHO05D006337 1.1e-08 65.1 208 36.1
COL.COLO4_16853 Corchorus olitorius HOM05D000629 ORTHO05D016154 9.4e-08 62.0 51 58.8
Cre03.g164950 Chlamydomonas reinhardtii HOM05D005238 ORTHO05D006337 1.6e-07 61.2 60 48.3
PSO675G5048 Papaver somniferum HOM05D001197 ORTHO05D000124 2.3e-06 57.4 66 42.4
Atru.chr2.3111 Acer truncatum HOM05D001197 ORTHO05D000124 3.0e-06 57.0 80 36.2
Atru.chr2.3134 Acer truncatum HOM05D001197 ORTHO05D000124 3.0e-06 57.0 80 36.2
CBR_g46302 Chara braunii HOM05D005238 ORTHO05D006337 3.0e-06 57.0 55 52.7
Sed0010178 Sechium edule HOM05D001197 ORTHO05D000124 4.0e-06 56.6 66 42.4
Eucgr.B03825 Eucalyptus grandis HOM05D001197 ORTHO05D000124 5.2e-06 56.2 75 38.7
MSTRG.2302 Avicennia marina HOM05D006251 ORTHO05D007695 6.8e-06 55.8 60 41.7
HPP92_006952 Vanilla planifolia HOM05D000142 ORTHO05D000124 6.8e-06 55.8 78 39.7
Atru.chr2.3112 Acer truncatum HOM05D000142 ORTHO05D000124 8.8e-06 55.5 82 39.0
Atru.chr2.3133 Acer truncatum HOM05D000142 ORTHO05D000124 8.8e-06 55.5 82 39.0
CANSAT54G2387 Cannabis sativa HOM05D000142 ORTHO05D000124 8.8e-06 55.5 78 38.5
MELO3C018147.2 Cucumis melo HOM05D000142 ORTHO05D000124 8.8e-06 55.5 84 39.3
Eucgr.L03666 Eucalyptus grandis HOM05D000142 ORTHO05D000124 8.8e-06 55.5 59 35.6
Prupe.6G252100 Prunus persica HOM05D000142 ORTHO05D000124 8.8e-06 55.5 75 41.3


User provided reference genes

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