Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012548 Camellia sinensis var. sinensis HOM05D004526 ORTHO05D005548 1.3e-185 652.9 323 100.0
CSS0008092 Camellia sinensis var. sinensis HOM05D004526 ORTHO05D005548 7.3e-173 610.5 325 94.8
CSS0019571 Camellia sinensis var. sinensis HOM05D004526 ORTHO05D005548 6.7e-134 481.1 407 67.6
Dinv06512 Davidia involucrata HOM05D004526 ORTHO05D005548 4.5e-130 468.4 414 64.5
Dinv07025 Davidia involucrata HOM05D004526 ORTHO05D005548 8.7e-126 454.1 407 64.4
Nn3g17130 Nelumbo nucifera HOM05D004526 ORTHO05D005548 3.8e-121 438.7 408 61.0
Cfa007509 Carpinus fangiana HOM05D004526 ORTHO05D005548 1.9e-120 436.4 408 61.8
Actinidia06070 Actinidia chinensis HOM05D004526 ORTHO05D005548 5.5e-120 434.9 396 62.9
CiPaw.03G030200 Carya illinoinensis HOM05D004526 ORTHO05D005548 3.6e-119 432.2 408 61.0
Nitab4.5_0000157g0090 Nicotiana tabacum HOM05D004526 ORTHO05D005548 4.6e-119 431.8 407 59.2
CAN.G226.26 Capsicum annuum HOM05D004526 ORTHO05D005548 3.0e-118 429.1 407 58.7
Peaxi162Scf00345g00811 Petunia axillaris HOM05D004526 ORTHO05D005548 3.0e-118 429.1 407 59.5
PGSC0003DMG400030284 Solanum tuberosum HOM05D004526 ORTHO05D005548 3.0e-118 429.1 407 59.2
TAR481G0009 Trochodendron aralioides HOM05D004526 ORTHO05D005548 3.9e-118 428.7 408 60.5
CiPaw.04G020200 Carya illinoinensis HOM05D004526 ORTHO05D005548 5.1e-118 428.3 408 60.3
Cc08_g10980 Coffea canephora HOM05D004526 ORTHO05D005548 5.1e-118 428.3 403 60.3
GSVIVG01032607001 Vitis vinifera HOM05D004526 ORTHO05D005548 1.5e-117 426.8 408 60.3
Sopen01g004780 Solanum pennellii HOM05D004526 ORTHO05D005548 2.6e-117 426.0 407 58.7
Solyc01g009290.4 Solanum lycopersicum HOM05D004526 ORTHO05D005548 4.4e-117 425.2 407 58.5
Haze_14584 Corylus avellana HOM05D004526 ORTHO05D005548 5.7e-117 424.9 434 58.5
Lj7A401T78 Lonicera japonica HOM05D004526 ORTHO05D005548 5.7e-117 424.9 407 60.4
Gohir.D04G050600 Gossypium hirsutum HOM05D004526 ORTHO05D005548 2.2e-116 422.9 408 60.0
Gorai.012G056100 Gossypium raimondii HOM05D004526 ORTHO05D005548 2.2e-116 422.9 408 60.0
Potri.017G077200 Populus trichocarpa HOM05D004526 ORTHO05D005548 2.2e-116 422.9 404 58.9
Glyma.10G292700 Glycine max HOM05D004526 ORTHO05D005548 1.1e-115 420.6 408 59.1
Prupe.3G272100 Prunus persica HOM05D004526 ORTHO05D005548 1.1e-115 420.6 410 59.3
Glyma.20G242900 Glycine max HOM05D004526 ORTHO05D005548 1.8e-115 419.9 408 58.6
Manes.17G021000 Manihot esculenta HOM05D004526 ORTHO05D005548 1.8e-115 419.9 408 58.6
Gohir.A05G364100 Gossypium hirsutum HOM05D004526 ORTHO05D005548 2.4e-115 419.5 408 59.8
Thecc.04G074400 Theobroma cacao HOM05D004526 ORTHO05D005548 2.4e-115 419.5 408 59.6
DCAR_021672 Daucus carota HOM05D004526 ORTHO05D005548 4.1e-115 418.7 414 56.3
CsaV3_5G037880 Cucumis sativus L. HOM05D004526 ORTHO05D005548 5.3e-115 418.3 408 59.1
ClCG09G018400 Citrullus lanatus HOM05D004526 ORTHO05D005548 6.9e-115 417.9 409 58.7
MSTRG.1703 Avicennia marina HOM05D004526 ORTHO05D005548 1.5e-114 416.8 405 58.3
QL02p080561 Quercus lobata HOM05D004526 ORTHO05D005548 1.5e-114 416.8 408 59.1
Ca_11340_v3 Cicer arietinum L. HOM05D004526 ORTHO05D005548 2.6e-114 416.0 408 58.3
Duzib147G0459 Durio zibethinus HOM05D004526 ORTHO05D005548 3.4e-114 415.6 408 59.1
Oeu018626.2 Olea europaea HOM05D004526 ORTHO05D005548 5.9e-114 414.8 443 55.1
TWI60G0005 Tripterygium wilfordii HOM05D004526 ORTHO05D005548 1.0e-113 414.1 408 57.6
Hund13244 Selenicereus undatus HOM05D004526 ORTHO05D005548 1.3e-113 413.7 409 58.7
Sed0004091 Sechium edule HOM05D004526 ORTHO05D005548 1.7e-113 413.3 408 58.3
Ciclev10011737m.g Citrus clementina HOM05D004526 ORTHO05D005548 3.8e-113 412.1 408 58.6
Migut.E01591 Erythranthe guttata HOM05D004526 ORTHO05D005548 8.5e-113 411.0 405 57.0
Phvul.007G007300 Phaseolus vulgaris HOM05D004526 ORTHO05D005548 8.5e-113 411.0 408 56.9
RcHm_v2.0_Chr2g0169161 Rosa chinensis HOM05D004526 ORTHO05D005548 8.5e-113 411.0 410 56.1
COL.COLO4_25181 Corchorus olitorius HOM05D004526 ORTHO05D005548 1.1e-112 410.6 408 58.6
RhsimUnG0055200 Rhododendron simsii HOM05D004526 ORTHO05D005548 1.9e-112 409.8 407 58.0
EL10Ac2g02933 Beta vulgaris HOM05D004526 ORTHO05D005548 2.5e-112 409.5 409 57.5
PSO478G0915 Papaver somniferum HOM05D004526 ORTHO05D005548 2.5e-112 409.5 408 56.1
PSO591G0197 Papaver somniferum HOM05D004526 ORTHO05D005548 5.5e-112 408.3 408 56.6
PSO832G1140 Papaver somniferum HOM05D004526 ORTHO05D005548 5.5e-112 408.3 408 56.6
PGR142G4111 Punica granatum HOM05D004526 ORTHO05D005548 9.4e-112 407.5 408 57.4
PSO017G3834 Papaver somniferum HOM05D004526 ORTHO05D005548 1.2e-111 407.1 408 55.9
Psat6g239400 Pisum sativum HOM05D004526 ORTHO05D005548 2.7e-111 406.0 408 56.6
arahy.Tifrunner.gnm1.ann1.S1RF4U Arachis hypogaea HOM05D004526 ORTHO05D005548 1.0e-110 404.1 408 57.8
Aqoxy3G03268 Aquilegia oxysepala HOM05D004526 ORTHO05D005548 1.4e-110 403.7 408 57.8
Lalb_Chr21g0307111 Lupinus albus HOM05D004526 ORTHO05D005548 1.8e-110 403.3 408 56.4
PGR142G2860 Punica granatum HOM05D004526 ORTHO05D005548 2.3e-110 402.9 408 57.4
Atru.chr8.1914 Acer truncatum HOM05D004526 ORTHO05D005548 6.7e-110 401.4 410 55.9
arahy.Tifrunner.gnm1.ann1.31SG4H Arachis hypogaea HOM05D004526 ORTHO05D005548 8.8e-110 401.0 408 57.6
arahy.Tifrunner.gnm1.ann1.PC3EEW Arachis hypogaea HOM05D004526 ORTHO05D005548 8.8e-110 401.0 408 57.6
MD17G1047000 Malus domestica HOM05D004526 ORTHO05D005548 1.1e-109 400.6 414 56.0
Sc11g0006930 Simmondsia chinensis HOM05D004526 ORTHO05D005548 1.5e-109 400.2 411 56.9
Lsat_1_v5_gn_4_176840 Lactuca sativa HOM05D004526 ORTHO05D005548 4.4e-109 398.7 407 56.0
Nn4g23045 Nelumbo nucifera HOM05D004526 ORTHO05D005548 7.4e-109 397.9 408 58.1
SalBow1G4721 Salvia bowleyana HOM05D004526 ORTHO05D005548 7.4e-109 397.9 405 57.0
VMungo0720G0008 Vigna mungo HOM05D004526 ORTHO05D005548 3.7e-108 395.6 397 57.2
FAN02G4162 Fragaria x ananassa HOM05D004526 ORTHO05D005548 8.2e-108 394.4 410 54.6
Medtr1g116060 Medicago truncatula HOM05D004526 ORTHO05D005548 1.1e-107 394.0 404 55.7
FvH4_6g49260 Fragaria vesca HOM05D004526 ORTHO05D005548 1.4e-107 393.7 410 54.6
Eucgr.I01917 Eucalyptus grandis HOM05D004526 ORTHO05D005548 2.4e-107 392.9 408 55.1
HanXRQChr09g0265571 Helianthus annuus HOM05D004526 ORTHO05D005548 3.1e-107 392.5 407 55.3
TAR622G0275 Trochodendron aralioides HOM05D004526 ORTHO05D005548 7.0e-107 391.3 378 60.8
unitig_578.g15969 Utricularia gibba HOM05D004526 ORTHO05D005548 2.6e-106 389.4 405 54.8
THA.LOC104811064 Tarenaya hassleriana HOM05D004526 ORTHO05D005548 3.8e-105 385.6 408 54.9
FAN05G4948 Fragaria x ananassa HOM05D004526 ORTHO05D005548 1.1e-104 384.0 428 52.3
MD09G1046200 Malus domestica HOM05D004526 ORTHO05D005548 3.2e-104 382.5 392 56.9
Sabra17G0069000 Salix brachista HOM05D004526 ORTHO05D005548 1.2e-103 380.6 391 55.8
FAN09G4881 Fragaria x ananassa HOM05D004526 ORTHO05D005548 1.6e-103 380.2 444 50.7
arahy.Tifrunner.gnm1.ann1.C6A6VI Arachis hypogaea HOM05D004526 ORTHO05D005548 8.0e-103 377.9 408 54.7
Aa31LG5G15080 Aethionema arabicum HOM05D004526 ORTHO05D005548 4.4e-101 372.1 404 53.0
CDE04G0248 Ceratophyllum demersum HOM05D004526 ORTHO05D005548 1.7e-100 370.2 420 53.8
ECA232G3358 Erigeron canadensis HOM05D004526 ORTHO05D005548 2.8e-100 369.4 397 52.4
ATR0051G026 Amborella trichopoda HOM05D004526 ORTHO05D005548 2.4e-99 366.3 412 52.7
HPP92_012836 Vanilla planifolia HOM05D004526 ORTHO05D005548 4.1e-99 365.5 393 55.0
BcaB04g19307 Brassica carinata HOM05D004526 ORTHO05D005548 1.2e-98 364.0 404 51.0
BraA03t12552Z Brassica rapa HOM05D004526 ORTHO05D005548 1.6e-98 363.6 404 50.7
Carub.0003s0384 Capsella rubella HOM05D004526 ORTHO05D005548 1.6e-98 363.6 406 51.5
Sp3g03530 Schrenkiella parvula HOM05D004526 ORTHO05D005548 2.0e-98 363.2 404 51.0
Thhalv10020725m.g Eutrema salsugineum HOM05D004526 ORTHO05D005548 5.9e-98 361.7 406 50.7
A03p33780 Brassica napus HOM05D004526 ORTHO05D005548 7.7e-98 361.3 404 50.5
C03p41080 Brassica napus HOM05D004526 ORTHO05D005548 7.7e-98 361.3 404 50.5
BcaC01g04355 Brassica carinata HOM05D004526 ORTHO05D005548 1.0e-97 360.9 404 50.5
BolC3t16397H Brassica oleracea HOM05D004526 ORTHO05D005548 1.0e-97 360.9 404 50.5
Lj5g0010112 Lotus japonicus HOM05D004526 ORTHO05D004861 1.7e-97 360.1 383 55.4
MD09G1046500 Malus domestica HOM05D004526 ORTHO05D005548 1.7e-97 360.1 397 53.9
Nitab4.5_0001504g0050 Nicotiana tabacum HOM05D004526 ORTHO05D005548 6.5e-97 358.2 582 40.9
AL3G14740 Arabidopsis lyrata HOM05D004526 ORTHO05D005548 1.5e-96 357.1 404 49.8
MELO3C021974.2 Cucumis melo HOM05D004526 ORTHO05D005548 1.9e-96 356.7 343 59.2
FAN14G2223 Fragaria x ananassa HOM05D004526 ORTHO05D005548 1.9e-96 356.7 444 48.6
AT3G04680 Arabidopsis thaliana HOM05D004526 ORTHO05D005548 2.5e-96 356.3 404 49.5
Zm00001eb205260 Zea mays HOM05D004526 ORTHO05D005548 5.5e-96 355.1 410 48.5
HanXRQChr12g0357441 Helianthus annuus HOM05D004526 ORTHO05D005548 1.6e-95 353.6 407 52.1
CARHR078910 Cardamine hirsuta HOM05D004526 ORTHO05D005548 1.4e-94 350.5 403 49.4
SEGI_10762 Sequoiadendron giganteum HOM05D004526 ORTHO05D005548 1.3e-92 344.0 406 48.0
CSS0037061 Camellia sinensis var. sinensis HOM05D004526 ORTHO05D005548 3.1e-91 339.3 360 57.8
Os02g0217500 Oryza sativa ssp. japonica HOM05D004526 ORTHO05D005548 1.7e-89 333.6 410 45.9
Sp1g35350 Schrenkiella parvula HOM05D004526 ORTHO05D005548 2.9e-89 332.8 401 47.6
Cfa007708 Carpinus fangiana HOM05D004526 ORTHO05D005548 4.2e-88 328.9 375 54.4
Mapoly0016s0080 Marchantia polymorpha HOM05D004526 ORTHO05D005548 3.4e-85 319.3 418 44.5
SMO165G0052 Selaginella moellendorffii HOM05D004526 ORTHO05D005548 5.4e-83 312.0 414 43.7
AagrBONN_evm.TU.Sc2ySwM_344.3939 Anthoceros agrestis HOM05D004526 ORTHO05D005548 9.2e-83 311.2 420 44.3
HPP92_009728 Vanilla planifolia HOM05D004526 ORTHO05D005548 5.6e-80 302.0 390 44.1
AUR62031643 Chenopodium quinoa HOM05D004526 ORTHO05D005548 2.4e-75 286.6 308 54.5
TPR.G10385 Trifolium pratense HOM05D004526 ORTHO05D005548 4.1e-75 285.8 229 67.7
AUR62038875 Chenopodium quinoa HOM05D004526 ORTHO05D005548 1.7e-73 280.4 305 54.8
CBR_g42172 Chara braunii HOM05D004526 ORTHO05D005548 3.1e-70 269.6 430 39.3
vmacro05738 Vaccinium macrocarpon HOM05D004526 ORTHO05D005548 1.5e-64 250.8 242 58.7
TAR305G0002 Trochodendron aralioides HOM05D004526 ORTHO05D005548 9.5e-64 248.1 258 55.0
Pp3c21_6910 Physcomitrium patens HOM05D004526 ORTHO05D005548 1.4e-62 244.2 346 44.8
AT5G39930 Arabidopsis thaliana HOM05D004526 ORTHO05D005548 1.4e-59 234.2 406 38.7
A04p15620 Brassica napus HOM05D004526 ORTHO05D005548 1.4e-59 234.2 401 38.4
C04p49900 Brassica napus HOM05D004526 ORTHO05D005548 1.2e-58 231.1 394 39.1
BcaC02g08842 Brassica carinata HOM05D004526 ORTHO05D005548 1.6e-58 230.7 394 39.3
BolC4t26581H Brassica oleracea HOM05D004526 ORTHO05D005548 1.6e-58 230.7 388 39.7
AL7G50210 Arabidopsis lyrata HOM05D004526 ORTHO05D005548 1.0e-57 228.0 400 38.2
C06p02960 Brassica napus HOM05D004526 ORTHO05D005548 1.7e-57 227.3 404 39.6
BolC6t35419H Brassica oleracea HOM05D004526 ORTHO05D005548 1.7e-57 227.3 404 39.6
BraA04t17197Z Brassica rapa HOM05D004526 ORTHO05D005548 1.9e-56 223.8 417 36.9
BcaB06g27742 Brassica carinata HOM05D004526 ORTHO05D005548 2.8e-55 219.9 396 37.9
SHI08813 Sapria himalayana HOM05D004526 ORTHO05D005548 4.7e-55 219.2 346 41.9
PRCOL_00003252 Prasinoderma coloniale HOM05D004526 ORTHO05D005548 7.6e-53 211.8 405 35.1
Thhalv10028283m.g Eutrema salsugineum HOM05D004526 ORTHO05D005548 1.4e-51 207.6 369 36.6
AUR62010753 Chenopodium quinoa HOM05D004526 ORTHO05D005548 1.9e-51 207.2 207 57.0
BcaC08g43036 Brassica carinata HOM05D004526 ORTHO05D005548 4.1e-51 206.1 398 36.9
MCO09G184 Micromonas commoda HOM05D004526 ORTHO05D005548 2.3e-49 200.3 419 33.4
arahy.Tifrunner.gnm1.ann1.QUI3Q9 Arachis hypogaea HOM05D004526 ORTHO05D005548 1.1e-43 181.4 237 46.8
CARHR262250 Cardamine hirsuta HOM05D004526 ORTHO05D005548 2.5e-40 170.2 393 31.6
Cre03.g194800 Chlamydomonas reinhardtii HOM05D004526 ORTHO05D005548 1.8e-38 164.1 396 31.3
Sp7g01800 Schrenkiella parvula HOM05D004526 ORTHO05D005548 9.0e-38 161.8 418 32.8
Carub.0007s3580 Capsella rubella HOM05D004526 ORTHO05D005548 4.5e-37 159.5 351 33.9
Cpa.g.sc14.41 Carica papaya HOM05D004526 ORTHO05D005548 1.7e-36 157.5 94 80.9
arahy.Tifrunner.gnm1.ann1.9G88ZW Arachis hypogaea HOM05D004526 ORTHO05D005548 1.8e-30 137.5 194 47.9
BcaB07g33761 Brassica carinata HOM05D004526 ORTHO05D005548 1.1e-27 128.3 296 30.7
arahy.Tifrunner.gnm1.ann1.HJC8LN Arachis hypogaea HOM05D004526 ORTHO05D005548 1.2e-26 124.8 191 43.5
Actinidia27487 Actinidia chinensis HOM05D004526 ORTHO05D005548 3.3e-24 116.7 110 60.0
arahy.Tifrunner.gnm1.ann1.TUDV7U Arachis hypogaea HOM05D004526 ORTHO05D005548 5.8e-21 105.9 96 58.3
SpUn0485_0020 Schrenkiella parvula HOM05D004526 ORTHO05D005548 1.8e-17 94.4 231 31.2
CAN.G742.26 Capsicum annuum HOM05D004526 ORTHO05D005548 9.7e-16 88.6 82 57.3
MD09G1046100 Malus domestica HOM05D004526 ORTHO05D005548 1.0e-12 78.6 67 61.2
Sp7g07820 Schrenkiella parvula HOM05D004526 ORTHO05D005548 1.1e-11 75.1 118 39.0
SHI08814 Sapria himalayana HOM05D004526 ORTHO05D005548 4.2e-11 73.2 42 73.8
TPR.G73 Trifolium pratense HOM05D004526 ORTHO05D005548 1.4e-09 68.2 39 79.5
Sp5g20800 Schrenkiella parvula HOM05D004526 ORTHO05D005548 3.9e-09 66.6 43 67.4
Actinidia23573 Actinidia chinensis HOM05D004526 ORTHO05D005548 1.8e-06 57.8 33 81.8


User provided reference genes

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