Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012209 Camellia sinensis var. sinensis HOM05D005326 ORTHO05D006734 2.1e-42 175.3 86 100.0
Actinidia34453 Actinidia chinensis HOM05D005326 ORTHO05D006734 8.5e-28 126.7 97 68.0
CSS0031446 Camellia sinensis var. sinensis HOM05D005326 ORTHO05D006734 1.6e-26 122.5 97 67.0
GSVIVG01024759001 Vitis vinifera HOM05D005326 ORTHO05D006734 3.0e-25 118.2 97 63.9
Glyma.14G115100 Glycine max HOM05D005326 ORTHO05D006734 5.2e-25 117.5 96 63.5
TWI79G0029 Tripterygium wilfordii HOM05D005326 ORTHO05D006734 1.2e-24 116.3 98 63.3
Cpa.g.sc112.33 Carica papaya HOM05D005326 ORTHO05D006734 3.3e-24 114.8 97 62.9
LjContig00155g0006083 Lotus japonicus HOM05D005326 ORTHO05D006734 9.7e-24 113.2 97 60.8
Actinidia23890 Actinidia chinensis HOM05D005326 ORTHO05D006734 1.3e-23 112.8 98 62.2
Dinv28633 Davidia involucrata HOM05D005326 ORTHO05D006734 2.8e-23 111.7 97 60.8
Sed0006470 Sechium edule HOM05D005326 ORTHO05D006734 2.8e-23 111.7 97 60.8
Aa31LG4G16050 Aethionema arabicum HOM05D005326 ORTHO05D006734 4.8e-23 110.9 97 57.7
Lj2A1080T48 Lonicera japonica HOM05D005326 ORTHO05D006734 4.8e-23 110.9 97 58.8
Thhalv10010556m.g Eutrema salsugineum HOM05D005326 ORTHO05D006734 8.3e-23 110.2 97 57.7
SGA_v2.0_scaffold16G07793 Striga asiatica HOM05D005326 ORTHO05D006734 8.3e-23 110.2 97 56.7
SGA_v2.0_scaffold89G27368 Striga asiatica HOM05D005326 ORTHO05D006734 8.3e-23 110.2 97 56.7
THA.LOC104810721 Tarenaya hassleriana HOM05D005326 ORTHO05D006734 1.1e-22 109.8 97 57.7
Aqoxy1G01640 Aquilegia oxysepala HOM05D005326 ORTHO05D006734 1.4e-22 109.4 97 57.7
Aqoxy2G00917 Aquilegia oxysepala HOM05D005326 ORTHO05D006734 1.4e-22 109.4 97 57.7
vmacro14591 Vaccinium macrocarpon HOM05D005326 ORTHO05D006734 3.1e-22 108.2 97 59.8
Sp5g14620 Schrenkiella parvula HOM05D005326 ORTHO05D006734 4.1e-22 107.8 97 56.7
Migut.N00441 Erythranthe guttata HOM05D005326 ORTHO05D006734 7.0e-22 107.1 97 56.7
Sabra09G0032400 Salix brachista HOM05D005326 ORTHO05D006734 7.0e-22 107.1 97 58.8
BcaB01g00945 Brassica carinata HOM05D005326 ORTHO05D006734 1.2e-21 106.3 97 55.7
CARHR155770 Cardamine hirsuta HOM05D005326 ORTHO05D006734 1.2e-21 106.3 97 56.7
Rhsim01G0236200 Rhododendron simsii HOM05D005326 ORTHO05D006734 1.6e-21 105.9 97 58.8
AL5G26380 Arabidopsis lyrata HOM05D005326 ORTHO05D006734 3.5e-21 104.8 97 56.7
FvH4_3g38440 Fragaria vesca HOM05D005326 ORTHO05D006734 4.5e-21 104.4 97 55.7
FAN11G3572 Fragaria x ananassa HOM05D005326 ORTHO05D006734 4.5e-21 104.4 97 55.7
FAN16G2933 Fragaria x ananassa HOM05D005326 ORTHO05D006734 4.5e-21 104.4 97 55.7
FAN21G1851 Fragaria x ananassa HOM05D005326 ORTHO05D006734 4.5e-21 104.4 97 55.7
FAN25G3125 Fragaria x ananassa HOM05D005326 ORTHO05D006734 4.5e-21 104.4 97 55.7
Medtr5g070100 Medicago truncatula HOM05D005326 ORTHO05D006734 4.5e-21 104.4 97 56.7
Potri.009G044900 Populus trichocarpa HOM05D005326 ORTHO05D006734 4.5e-21 104.4 97 56.7
BcaB01g00943 Brassica carinata HOM05D005326 ORTHO05D006734 5.9e-21 104.0 97 53.6
C03p71400 Brassica napus HOM05D005326 ORTHO05D006734 5.9e-21 104.0 97 53.6
BolC3t19423H Brassica oleracea HOM05D005326 ORTHO05D006734 5.9e-21 104.0 97 53.6
AT3G47120 Arabidopsis thaliana HOM05D005326 ORTHO05D006734 7.7e-21 103.6 97 56.7
BraA06t25116Z Brassica rapa HOM05D005326 ORTHO05D006734 2.2e-20 102.1 97 52.6
Glyma.08G231300 Glycine max HOM05D005567 ORTHO05D005651 2.9e-20 101.7 96 57.3
Nn2g13685 Nelumbo nucifera HOM05D005326 ORTHO05D006734 2.9e-20 101.7 98 56.1
A06p20410 Brassica napus HOM05D005326 ORTHO05D006734 5.0e-20 100.9 97 51.5
AL8G35090 Arabidopsis lyrata HOM05D005326 ORTHO05D006734 8.5e-20 100.1 97 52.6
Ciclev10028940m.g Citrus clementina HOM05D005326 ORTHO05D006734 8.5e-20 100.1 97 54.6
Nitab4.5_0002906g0020 Nicotiana tabacum HOM05D005326 ORTHO05D006734 8.5e-20 100.1 97 54.6
Carub.0005s1334 Capsella rubella HOM05D005326 ORTHO05D006734 1.1e-19 99.8 97 52.6
ClCG02G019610 Citrullus lanatus HOM05D005326 ORTHO05D006734 1.1e-19 99.8 97 54.6
MELO3C025859.2 Cucumis melo HOM05D005326 ORTHO05D006734 1.5e-19 99.4 97 54.6
CANSAT54G2601 Cannabis sativa HOM05D005326 ORTHO05D006734 1.9e-19 99.0 97 54.6
Cfa011686 Carpinus fangiana HOM05D005326 ORTHO05D006734 1.9e-19 99.0 97 54.6
Haze_24293 Corylus avellana HOM05D005326 ORTHO05D006734 1.9e-19 99.0 97 54.6
CsaV3_4G026080 Cucumis sativus L. HOM05D005326 ORTHO05D006734 1.9e-19 99.0 97 53.6
HanXRQChr08g0229511 Helianthus annuus HOM05D005326 ORTHO05D006734 1.9e-19 99.0 97 55.7
Solyc03g119430.4 Solanum lycopersicum HOM05D005326 ORTHO05D006734 1.9e-19 99.0 97 54.6
Sopen03g038280 Solanum pennellii HOM05D005326 ORTHO05D006734 1.9e-19 99.0 97 54.6
Peaxi162Scf00015g01035 Petunia axillaris HOM05D005326 ORTHO05D006734 2.5e-19 98.6 91 54.9
Manes.02G120400 Manihot esculenta HOM05D005326 ORTHO05D006734 3.2e-19 98.2 97 54.6
Eucgr.B02263 Eucalyptus grandis HOM05D005326 ORTHO05D006734 4.2e-19 97.8 97 53.6
Hma1.2p1_0227F.1_g096450 Hydrangea macrophylla HOM05D005326 ORTHO05D006734 4.2e-19 97.8 97 55.7
PGR102G1694 Punica granatum HOM05D005326 ORTHO05D006734 4.2e-19 97.8 97 55.7
Sc21g0006290 Simmondsia chinensis HOM05D005326 ORTHO05D006734 4.2e-19 97.8 97 53.6
MELO3C003237.2 Cucumis melo HOM05D005326 ORTHO05D006734 5.5e-19 97.4 97 52.6
Duzib168G0373 Durio zibethinus HOM05D005326 ORTHO05D006734 5.5e-19 97.4 97 54.6
Mapoly0013s0140 Marchantia polymorpha HOM05D005326 ORTHO05D006734 5.5e-19 97.4 97 54.6
Oeu000445.1 Olea europaea HOM05D005326 ORTHO05D006734 5.5e-19 97.4 97 52.6
PGSC0003DMG400005636 Solanum tuberosum HOM05D005326 ORTHO05D006734 5.5e-19 97.4 97 53.6
Thecc.09G302900 Theobroma cacao HOM05D005326 ORTHO05D006734 5.5e-19 97.4 97 54.6
MBI14_g28264_MAGBIO Magnolia biondii HOM05D005326 ORTHO05D006734 7.2e-19 97.1 97 53.6
CiPaw.13G078700 Carya illinoinensis HOM05D005326 ORTHO05D006734 9.4e-19 96.7 97 53.6
Cc10_g11040 Coffea canephora HOM05D005326 ORTHO05D006734 9.4e-19 96.7 97 53.6
Lsat_1_v5_gn_9_19460 Lactuca sativa HOM05D005326 ORTHO05D006734 9.4e-19 96.7 97 54.6
Pp3c19_15660 Physcomitrium patens HOM05D005326 ORTHO05D006734 1.2e-18 96.3 97 52.6
QL01p038020 Quercus lobata HOM05D005326 ORTHO05D006734 1.2e-18 96.3 97 54.6
Os03g0826400 Oryza sativa ssp. japonica HOM05D005326 ORTHO05D006734 3.6e-18 94.7 97 50.5
TAR369G0957 Trochodendron aralioides HOM05D005326 ORTHO05D006734 3.6e-18 94.7 96 53.1
Hund18851 Selenicereus undatus HOM05D005326 ORTHO05D006734 4.7e-18 94.4 97 52.6
TPR.G23707 Trifolium pratense HOM05D005326 ORTHO05D006734 4.7e-18 94.4 97 53.6
Prupe.6G058600 Prunus persica HOM05D005326 ORTHO05D006734 6.1e-18 94.0 97 51.5
Zm00001eb063190 Zea mays HOM05D005326 ORTHO05D006734 6.1e-18 94.0 97 50.5
AagrBONN_evm.TU.Sc2ySwM_344.2701 Anthoceros agrestis HOM05D005326 ORTHO05D006734 8.0e-18 93.6 97 50.5
Ca_05594_v3 Cicer arietinum L. HOM05D005326 ORTHO05D006734 1.0e-17 93.2 97 52.6
TPR.G17337 Trifolium pratense HOM05D005326 ORTHO05D006734 1.0e-17 93.2 97 52.6
CAN.G1425.2 Capsicum annuum HOM05D005326 ORTHO05D006734 1.4e-17 92.8 97 52.6
ECA247G1506 Erigeron canadensis HOM05D005326 ORTHO05D006734 1.4e-17 92.8 97 52.6
CDE02G0086 Ceratophyllum demersum HOM05D005326 ORTHO05D006734 1.8e-17 92.4 100 53.0
PSO339G2131 Papaver somniferum HOM05D005326 ORTHO05D006734 1.8e-17 92.4 97 52.6
Glyma.02G226100 Glycine max HOM05D005326 ORTHO05D006734 2.3e-17 92.0 97 52.6
Glyma.14G192900 Glycine max HOM05D005326 ORTHO05D006734 2.3e-17 92.0 97 52.6
unitig_699.g19203 Utricularia gibba HOM05D005326 ORTHO05D006734 2.3e-17 92.0 99 49.5
ATR0787G171 Amborella trichopoda HOM05D005326 ORTHO05D006734 3.0e-17 91.7 97 49.5
DCAR_007383 Daucus carota HOM05D005326 ORTHO05D006734 3.0e-17 91.7 97 51.5
Thhalv10015340m.g Eutrema salsugineum HOM05D005326 ORTHO05D006734 3.0e-17 91.7 82 58.5
MD03G1072000 Malus domestica HOM05D005326 ORTHO05D006734 3.0e-17 91.7 97 51.5
PSO801G0040 Papaver somniferum HOM05D005326 ORTHO05D006734 3.0e-17 91.7 97 52.6
arahy.Tifrunner.gnm1.ann1.2AHU2Q Arachis hypogaea HOM05D005326 ORTHO05D006734 4.0e-17 91.3 96 52.1
RcHm_v2.0_Chr5g0069091 Rosa chinensis HOM05D005326 ORTHO05D006734 5.2e-17 90.9 97 50.5
arahy.Tifrunner.gnm1.ann1.0DMM9R Arachis hypogaea HOM05D005326 ORTHO05D006734 6.8e-17 90.5 97 51.5
COL.COLO4_19142 Corchorus olitorius HOM05D005326 ORTHO05D006734 6.8e-17 90.5 97 50.5
Lalb_Chr04g0252261 Lupinus albus HOM05D005326 ORTHO05D006734 6.8e-17 90.5 97 50.5
Psat2g058880 Pisum sativum HOM05D005326 ORTHO05D006734 6.8e-17 90.5 97 51.5
TAR369G0610 Trochodendron aralioides HOM05D005326 ORTHO05D006734 6.8e-17 90.5 64 67.2
Phvul.008G261900 Phaseolus vulgaris HOM05D005326 ORTHO05D006734 8.8e-17 90.1 97 51.5
MD11G1076000 Malus domestica HOM05D005326 ORTHO05D006734 1.2e-16 89.7 97 50.5
arahy.Tifrunner.gnm1.ann1.V0GB02 Arachis hypogaea HOM05D005326 ORTHO05D006734 1.5e-16 89.4 96 51.0
Thhalv10011154m.g Eutrema salsugineum HOM05D005326 ORTHO05D006734 1.5e-16 89.4 100 50.0
Oeu045044.1 Olea europaea HOM05D005326 ORTHO05D006734 1.5e-16 89.4 100 50.0
VMungo0647G1210 Vigna mungo HOM05D005326 ORTHO05D006734 1.5e-16 89.4 96 50.0
HPP92_016952 Vanilla planifolia HOM05D005326 ORTHO05D006734 2.0e-16 89.0 98 51.0
arahy.Tifrunner.gnm1.ann1.L63P0H Arachis hypogaea HOM05D005326 ORTHO05D006734 2.6e-16 88.6 97 50.5
Gohir.D05G090100 Gossypium hirsutum HOM05D005326 ORTHO05D006734 3.4e-16 88.2 98 52.0
Gorai.009G092500 Gossypium raimondii HOM05D005326 ORTHO05D006734 3.4e-16 88.2 98 52.0
Gohir.A05G089100 Gossypium hirsutum HOM05D005326 ORTHO05D006734 5.7e-16 87.4 100 51.0
PSO832G2220 Papaver somniferum HOM05D005326 ORTHO05D006734 5.7e-16 87.4 97 49.5
EL10Ac7g16152 Beta vulgaris HOM05D005326 ORTHO05D006734 9.8e-16 86.7 97 49.5
Ah.08g221100 Amaranthus hybridus HOM05D005326 ORTHO05D006734 2.8e-15 85.1 97 49.5
Nitab4.5_0005224g0010 Nicotiana tabacum HOM05D005326 ORTHO05D006734 1.1e-14 83.2 76 56.6
CBR_g29333 Chara braunii HOM05D005326 ORTHO05D006734 1.8e-14 82.4 94 47.9
Eucgr.B02261 Eucalyptus grandis HOM05D005326 ORTHO05D006734 1.8e-14 82.4 64 60.9
HPP92_016949 Vanilla planifolia HOM05D005326 ORTHO05D006734 1.6e-13 79.3 76 51.3
Eucgr.L03188 Eucalyptus grandis HOM05D005326 ORTHO05D006734 2.3e-12 75.5 82 50.0
CBR_g921 Chara braunii HOM05D005326 ORTHO05D006734 1.2e-10 69.7 94 41.5
PGSC0003DMG400035454 Solanum tuberosum HOM05D005326 ORTHO05D006734 1.2e-10 69.7 69 56.5


User provided reference genes

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