Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011135 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 0.0e+00 3444.4 1789 100.0
Dinv33821 Davidia involucrata HOM05D003939 ORTHO05D005979 0.0e+00 2799.6 1714 84.0
Rhsim10G0043700 Rhododendron simsii HOM05D003939 ORTHO05D005979 0.0e+00 2799.2 1876 78.0
vmacro05651 Vaccinium macrocarpon HOM05D003939 ORTHO05D005979 0.0e+00 2795.4 1791 81.6
QL02p067905 Quercus lobata HOM05D003939 ORTHO05D005979 0.0e+00 2602.0 1804 74.8
Cfa007652 Carpinus fangiana HOM05D003939 ORTHO05D005979 0.0e+00 2558.1 1803 74.6
GSVIVG01011514001 Vitis vinifera HOM05D003939 ORTHO05D005979 0.0e+00 2538.8 1787 76.4
Actinidia01988 Actinidia chinensis HOM05D003939 ORTHO05D005979 0.0e+00 2529.2 1521 86.1
Prupe.3G256700 Prunus persica HOM05D003939 ORTHO05D005979 0.0e+00 2491.5 1811 73.1
Ciclev10010894m.g Citrus clementina HOM05D003939 ORTHO05D005979 0.0e+00 2480.3 1815 72.0
Thecc.04G092900 Theobroma cacao HOM05D003939 ORTHO05D005979 0.0e+00 2473.0 1804 71.8
Manes.01G097400 Manihot esculenta HOM05D003939 ORTHO05D005979 0.0e+00 2471.4 1812 73.0
Potri.017G092600 Populus trichocarpa HOM05D003939 ORTHO05D005979 0.0e+00 2469.1 1808 72.6
MD17G1057600 Malus domestica HOM05D003939 ORTHO05D005979 0.0e+00 2462.2 1814 72.0
Duzib264G0523 Durio zibethinus HOM05D003939 ORTHO05D005979 0.0e+00 2461.4 1805 71.7
Nn3g17411 Nelumbo nucifera HOM05D003939 ORTHO05D005979 0.0e+00 2450.2 1792 71.4
MD09G1064300 Malus domestica HOM05D003939 ORTHO05D005979 0.0e+00 2432.5 1812 71.5
Atru.chr8.419 Acer truncatum HOM05D003939 ORTHO05D005979 0.0e+00 2423.3 1710 75.0
RcHm_v2.0_Chr2g0166131 Rosa chinensis HOM05D003939 ORTHO05D005979 0.0e+00 2423.3 1808 71.0
TWI60G0125 Tripterygium wilfordii HOM05D003939 ORTHO05D005979 0.0e+00 2421.0 1813 71.2
COL.COLO4_21400 Corchorus olitorius HOM05D003939 ORTHO05D005979 0.0e+00 2414.8 1802 70.3
Gorai.006G011000 Gossypium raimondii HOM05D003939 ORTHO05D005979 0.0e+00 2402.9 1804 69.8
Gohir.A09G010200 Gossypium hirsutum HOM05D003939 ORTHO05D005979 0.0e+00 2402.5 1804 70.0
Cc07_g03930 Coffea canephora HOM05D003939 ORTHO05D005979 0.0e+00 2396.3 1799 71.1
Sabra17G0081700 Salix brachista HOM05D003939 ORTHO05D005979 0.0e+00 2395.9 1876 69.3
PGR083G1596 Punica granatum HOM05D003939 ORTHO05D005979 0.0e+00 2389.4 1816 69.5
FAN05G1397 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2378.2 1813 70.0
Eucgr.J01370 Eucalyptus grandis HOM05D003939 ORTHO05D005979 0.0e+00 2369.3 1809 70.0
DCAR_025422 Daucus carota HOM05D003939 ORTHO05D005979 0.0e+00 2364.0 1749 70.5
FAN09G4101 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2360.5 1813 69.4
FAN02G0596 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2355.5 1814 69.5
FvH4_6g47080 Fragaria vesca HOM05D003939 ORTHO05D005979 0.0e+00 2354.7 1813 69.4
CANSAT64G0725 Cannabis sativa HOM05D003939 ORTHO05D005979 0.0e+00 2354.3 1805 68.8
Glyma.13G057300 Glycine max HOM05D003939 ORTHO05D005979 0.0e+00 2354.3 1759 70.1
Sopen03g014250 Solanum pennellii HOM05D003939 ORTHO05D005979 0.0e+00 2347.8 1789 69.9
Migut.H00638 Erythranthe guttata HOM05D003939 ORTHO05D005979 0.0e+00 2342.4 1750 69.4
MSTRG.3009 Avicennia marina HOM05D003939 ORTHO05D005979 0.0e+00 2335.8 1785 68.3
Lalb_Chr06g0175001 Lupinus albus HOM05D003939 ORTHO05D005979 0.0e+00 2332.8 1751 69.7
Sed0008583 Sechium edule HOM05D003939 ORTHO05D005979 0.0e+00 2316.2 1809 67.8
CAN.G381.1 Capsicum annuum HOM05D003939 ORTHO05D005979 0.0e+00 2310.4 1741 69.7
arahy.Tifrunner.gnm1.ann1.U2J8P8 Arachis hypogaea HOM05D003939 ORTHO05D005979 0.0e+00 2305.4 1780 68.6
SGA_v2.0_scaffold52G19175 Striga asiatica HOM05D003939 ORTHO05D005979 0.0e+00 2302.7 1788 67.2
ECA246G3607 Erigeron canadensis HOM05D003939 ORTHO05D005979 0.0e+00 2298.1 1810 67.5
FAN14G2443 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 2294.6 1813 68.2
Phvul.004G035100 Phaseolus vulgaris HOM05D003939 ORTHO05D005979 0.0e+00 2292.7 1760 68.7
Duzib187G1101 Durio zibethinus HOM05D003939 ORTHO05D005979 0.0e+00 2292.3 1804 67.3
VMungo0464G1977 Vigna mungo HOM05D003939 ORTHO05D005979 0.0e+00 2290.8 1803 67.6
arahy.Tifrunner.gnm1.ann1.HNPA74 Arachis hypogaea HOM05D003939 ORTHO05D005979 0.0e+00 2288.1 1815 67.3
Lj2g0019419 Lotus japonicus HOM05D003939 ORTHO05D005979 0.0e+00 2268.4 1813 66.7
Medtr6g015060 Medicago truncatula HOM05D003939 ORTHO05D005979 0.0e+00 2260.3 1754 67.8
Aqoxy3G03594 Aquilegia oxysepala HOM05D003939 ORTHO05D005979 0.0e+00 2254.6 1751 66.8
CsaV3_4G008740 Cucumis sativus L. HOM05D003939 ORTHO05D005979 0.0e+00 2242.6 1692 70.4
AUR62018173 Chenopodium quinoa HOM05D003939 ORTHO05D005979 0.0e+00 2236.8 1781 66.1
AUR62042423 Chenopodium quinoa HOM05D003939 ORTHO05D005979 0.0e+00 2233.0 1753 66.7
Lsat_1_v5_gn_3_98161 Lactuca sativa HOM05D003939 ORTHO05D005979 0.0e+00 2230.3 1818 66.0
Solyc03g059420.4 Solanum lycopersicum HOM05D003939 ORTHO05D005979 0.0e+00 2222.2 1712 68.9
Ca_04301_v3 Cicer arietinum L. HOM05D003939 ORTHO05D005979 0.0e+00 2212.6 1660 69.5
PSO013G0104 Papaver somniferum HOM05D003939 ORTHO05D005979 0.0e+00 2206.4 1822 64.9
HanXRQChr17g0546541 Helianthus annuus HOM05D003939 ORTHO05D005979 0.0e+00 2202.6 1771 66.5
Sc10g0004620 Simmondsia chinensis HOM05D003939 ORTHO05D005979 0.0e+00 2202.2 1645 69.9
THA.LOC104821002 Tarenaya hassleriana HOM05D003939 ORTHO05D005979 0.0e+00 2199.1 1811 63.7
Hund13156 Selenicereus undatus HOM05D003939 ORTHO05D005979 0.0e+00 2191.0 1826 65.1
AL6G26400 Arabidopsis lyrata HOM05D003939 ORTHO05D005979 0.0e+00 2182.1 1800 63.6
Thhalv10012417m.g Eutrema salsugineum HOM05D003939 ORTHO05D005979 0.0e+00 2179.4 1800 63.6
Sp6g28560 Schrenkiella parvula HOM05D003939 ORTHO05D005979 0.0e+00 2178.7 1809 63.2
TPR.G10018 Trifolium pratense HOM05D003939 ORTHO05D005979 0.0e+00 2173.7 1731 67.2
AT5G15540 Arabidopsis thaliana HOM05D003939 ORTHO05D005979 0.0e+00 2170.6 1799 63.1
Nitab4.5_0002960g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 0.0e+00 2156.7 1666 68.4
Carub.0006s1371 Capsella rubella HOM05D003939 ORTHO05D005979 0.0e+00 2154.4 1801 62.9
C09p61660 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 2152.9 1805 63.0
BolC9t59004H Brassica oleracea HOM05D003939 ORTHO05D005979 0.0e+00 2152.9 1805 63.0
EL10Ac2g03123 Beta vulgaris HOM05D003939 ORTHO05D005979 0.0e+00 2146.3 1789 64.5
A10p23410 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 2132.8 1803 62.9
BraA10t44409Z Brassica rapa HOM05D003939 ORTHO05D005979 0.0e+00 2132.8 1803 62.9
Lju41A4T71 Lonicera japonica HOM05D003939 ORTHO05D005979 0.0e+00 2129.8 1511 74.2
C02p07770 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 2128.2 1819 61.5
A02p03080 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 2125.1 1802 62.0
MELO3C016065.2 Cucumis melo HOM05D003939 ORTHO05D005979 0.0e+00 2114.3 1818 64.9
BolC2t06707H Brassica oleracea HOM05D003939 ORTHO05D005979 0.0e+00 2113.6 1824 61.3
BraA02t05278Z Brassica rapa HOM05D003939 ORTHO05D005979 0.0e+00 2112.0 1811 61.6
Haze_14442 Corylus avellana HOM05D003939 ORTHO05D005979 0.0e+00 2103.9 1460 75.5
Aa31LG11G14050 Aethionema arabicum HOM05D003939 ORTHO05D005979 0.0e+00 2097.0 1812 61.5
Ah.10g032070 Amaranthus hybridus HOM05D003939 ORTHO05D005979 0.0e+00 2058.1 1879 60.8
Peaxi162Scf00451g00326 Petunia axillaris HOM05D003939 ORTHO05D005979 0.0e+00 2057.0 1581 68.9
MBI19_g03793_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D005979 0.0e+00 2044.6 1541 69.7
ClCG07G007360 Citrullus lanatus HOM05D003939 ORTHO05D005979 0.0e+00 2034.6 1497 71.5
Psat1g067400 Pisum sativum HOM05D003939 ORTHO05D005979 0.0e+00 1989.2 1815 60.8
Nitab4.5_0001637g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 0.0e+00 1986.8 1647 65.1
SHI25772 Sapria himalayana HOM05D003939 ORTHO05D005979 0.0e+00 1903.6 1689 60.7
Gohir.D09G009300 Gossypium hirsutum HOM05D003939 ORTHO05D005979 0.0e+00 1808.9 1347 69.9
ATR0064G076 Amborella trichopoda HOM05D003939 ORTHO05D005979 0.0e+00 1771.5 1496 62.1
Zm00001eb298600 Zea mays HOM05D003939 ORTHO05D005979 0.0e+00 1711.8 1764 54.3
Zm00001eb118180 Zea mays HOM05D003939 ORTHO05D005979 0.0e+00 1675.2 1586 57.7
PSO063G3321 Papaver somniferum HOM05D003939 ORTHO05D005979 0.0e+00 1604.7 1370 62.8
Mapoly0011s0050 Marchantia polymorpha HOM05D003939 ORTHO05D005979 0.0e+00 1478.0 1815 46.4
Pp3c15_14600 Physcomitrium patens HOM05D003939 ORTHO05D005979 0.0e+00 1409.4 1776 46.5
TAR371G0557 Trochodendron aralioides HOM05D003939 ORTHO05D005979 0.0e+00 1397.5 986 76.5
SMO116G0168 Selaginella moellendorffii HOM05D003939 ORTHO05D005979 0.0e+00 1377.1 1760 45.7
Oeu007060.1 Olea europaea HOM05D003939 ORTHO05D005979 0.0e+00 1374.4 1214 62.5
Glyma.19G029100 Glycine max HOM05D003939 ORTHO05D005979 0.0e+00 1322.0 998 69.4
AagrBONN_evm.TU.Sc2ySwM_344.3096 Anthoceros agrestis HOM05D003939 ORTHO05D005979 0.0e+00 1321.6 1734 44.2
SEGI_00927 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 0.0e+00 1113.6 1082 54.3
HPP92_012299 Vanilla planifolia HOM05D003939 ORTHO05D005979 0.0e+00 1096.6 957 62.1
TAR371G1006 Trochodendron aralioides HOM05D003939 ORTHO05D005979 1.5e-296 1023.8 788 68.7
CBR_g19320 Chara braunii HOM05D003939 ORTHO05D005979 8.7e-292 1008.1 1514 40.2
Os07g0110400 Oryza sativa ssp. japonica HOM05D003939 ORTHO05D005979 3.1e-289 999.6 915 59.5
CiPaw.03G089600 Carya illinoinensis HOM05D003939 ORTHO05D005979 1.2e-264 917.9 655 72.7
CARHR197770 Cardamine hirsuta HOM05D003939 ORTHO05D005979 7.7e-264 915.2 644 71.6
CSS0005126 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 3.6e-229 800.0 488 88.5
HPP92_012253 Vanilla planifolia HOM05D003939 ORTHO05D005979 4.7e-229 799.7 894 49.4
HPP92_012298 Vanilla planifolia HOM05D003939 ORTHO05D005979 1.1e-193 682.2 739 49.7
Psat0s5863g0080 Pisum sativum HOM05D003939 ORTHO05D005979 1.6e-192 678.3 507 69.8
CSS0039149 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 6.0e-192 676.4 458 81.0
Glyma.19G029000 Glycine max HOM05D003939 ORTHO05D005979 1.5e-179 635.2 510 65.3
Cpa.g.sc2744.1 Carica papaya HOM05D003939 ORTHO05D005979 4.2e-169 600.5 437 70.3
PGSC0003DMG400012376 Solanum tuberosum HOM05D003939 ORTHO05D005979 2.4e-156 558.1 483 62.7
DCAR_026524 Daucus carota HOM05D003939 ORTHO05D005979 1.4e-145 522.3 560 54.5
SEGI_06328 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 8.8e-143 513.1 521 53.4
Gohir.1Z049344 Gossypium hirsutum HOM05D003939 ORTHO05D005979 1.4e-140 505.8 424 64.9
CDE04G2810 Ceratophyllum demersum HOM05D003939 ORTHO05D005979 9.1e-140 503.1 482 58.5
Hma1.2p1_0481F.1_g162010 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 2.3e-135 488.4 373 74.3
Cpa.g.sc14.167 Carica papaya HOM05D003939 ORTHO05D005979 7.3e-105 387.1 293 69.6
HPP92_012254 Vanilla planifolia HOM05D003939 ORTHO05D005979 6.2e-104 384.0 325 62.5
SEGI_32509 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 1.6e-99 369.4 370 53.2
Prupe.2G279500 Prunus persica HOM05D003939 ORTHO05D005979 2.7e-99 368.6 416 51.7
SEGI_04445 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 5.0e-98 364.4 283 65.7
CSS0004390 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 6.2e-88 330.9 254 73.2
Psat0s5863g0040 Pisum sativum HOM05D003939 ORTHO05D005979 3.1e-87 328.6 371 53.4
ClCG07G007370 Citrullus lanatus HOM05D003939 ORTHO05D005979 1.7e-77 296.2 269 58.7
Cre06.g278269 Chlamydomonas reinhardtii HOM05D003939 ORTHO05D005979 1.7e-74 286.2 1638 22.6
Hma1.2p1_0481F.1_g162030 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 9.6e-65 253.8 221 59.7
Lju41A4T72 Lonicera japonica HOM05D003939 ORTHO05D005979 9.0e-55 220.7 164 66.5
Psat0s9359g0040 Pisum sativum HOM05D003939 ORTHO05D005979 3.2e-52 212.2 186 61.3
CiPaw.03G089700 Carya illinoinensis HOM05D003939 ORTHO05D005979 3.2e-44 185.7 211 60.2
MCO01G540 Micromonas commoda HOM05D003939 ORTHO05D005979 3.2e-44 185.7 522 28.7
BolC9t58997H Brassica oleracea HOM05D003939 ORTHO05D005979 6.1e-43 181.4 120 73.3
HPP92_012255 Vanilla planifolia HOM05D003939 ORTHO05D005979 3.0e-42 179.1 419 33.7
MBI19_g03794_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 6.7e-34 151.4 196 48.0
MBI06_g03947_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 6.3e-32 144.8 163 49.7
CAN.G61.23 Capsicum annuum HOM05D003939 ORTHO05D005979 1.1e-31 144.1 117 58.1
Psat5g278520 Pisum sativum HOM05D003939 ORTHO05D030477 3.5e-30 139.0 98 71.4
Cpa.g.c43937 Carica papaya HOM05D003939 ORTHO05D005979 7.7e-30 137.9 70 98.6
Hma1.2p1_0481F.1_g162040 Hydrangea macrophylla HOM05D003939 ORTHO05D013368 8.5e-29 134.4 78 83.3
Glyma.01G130950 Glycine max HOM05D003939 ORTHO05D005979 9.4e-28 131.0 101 69.3
Psat3g154360 Pisum sativum HOM05D003939 ORTHO05D030477 1.2e-27 130.6 96 69.8
Psat3g154320 Pisum sativum HOM05D003939 ORTHO05D030477 8.0e-27 127.9 97 68.0
arahy.Tifrunner.gnm1.ann1.HI697U Arachis hypogaea HOM05D001278 ORTHO05D005979 7.4e-25 121.3 88 71.6
Solyc03g059400.1 Solanum lycopersicum HOM05D003939 ORTHO05D013368 1.4e-23 117.1 79 70.9
Nitab4.5_0002960g0020 Nicotiana tabacum HOM05D003939 ORTHO05D013368 4.1e-23 115.5 76 77.6
Nitab4.5_0001637g0020 Nicotiana tabacum HOM05D003939 ORTHO05D013368 1.6e-22 113.6 76 75.0
C09p61570 Brassica napus HOM05D003939 ORTHO05D005979 2.0e-22 113.2 78 69.2
MELO3C000805.2 Cucumis melo HOM05D003939 ORTHO05D005979 3.5e-22 112.5 92 66.3
MELO3C001621.2 Cucumis melo HOM05D003939 ORTHO05D005979 4.5e-22 112.1 78 70.5
TPR.G3973 Trifolium pratense HOM05D003939 ORTHO05D005979 3.8e-21 109.0 174 39.7
C09p61560 Brassica napus HOM05D003939 ORTHO05D013368 1.9e-20 106.7 104 53.8
arahy.Tifrunner.gnm1.ann1.BV8AZF Arachis hypogaea HOM05D001278 ORTHO05D004786 4.2e-20 105.5 71 73.2
Atru.chr8.420 Acer truncatum HOM05D003939 ORTHO05D013368 8.0e-19 101.3 82 67.1
TAR629G2192 Trochodendron aralioides HOM05D003939 ORTHO05D013368 8.0e-19 101.3 90 62.2
SEGI_31617 Sequoiadendron giganteum HOM05D003939 ORTHO05D050928 5.7e-17 95.1 257 29.6
TAR376G0271 Trochodendron aralioides HOM05D003939 ORTHO05D009412 1.3e-16 94.0 107 49.5
TAR376G0356 Trochodendron aralioides HOM05D003939 ORTHO05D009412 3.7e-16 92.4 107 48.6
TAR629G0495 Trochodendron aralioides HOM05D003939 ORTHO05D005979 8.3e-16 91.3 59 74.6
MELO3C001721.2 Cucumis melo HOM05D003939 ORTHO05D005979 5.9e-14 85.1 61 68.9
EL10Ac2g03124 Beta vulgaris HOM05D005544 ORTHO05D007303 8.5e-13 81.3 111 44.1
PSO013G0049 Papaver somniferum HOM05D003939 ORTHO05D013368 4.2e-12 79.0 75 53.3
BolC9t58995H Brassica oleracea HOM05D003939 ORTHO05D013368 2.1e-11 76.6 73 54.8
SEGI_38119 Sequoiadendron giganteum HOM05D003939 ORTHO05D050928 3.6e-11 75.9 153 28.8
ATR0035G002 Amborella trichopoda HOM05D003939 ORTHO05D013368 4.7e-11 75.5 65 55.4
ATR1045G001 Amborella trichopoda HOM05D003939 ORTHO05D013368 4.7e-11 75.5 65 55.4
Psat5g164760 Pisum sativum HOM05D003939 ORTHO05D005979 1.4e-10 73.9 48 75.0
ATR0064G012 Amborella trichopoda HOM05D003939 ORTHO05D013368 1.8e-10 73.6 65 53.8
MBI19_g32131_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 1.8e-10 73.6 105 41.9
PSO063G0192 Papaver somniferum HOM05D001862 ORTHO05D005979 3.7e-08 65.9 102 41.2
Ca_09613_v3 Cicer arietinum L. HOM05D001217 ORTHO05D001097 4.1e-07 62.4 65 43.1
Medtr1g068930 Medicago truncatula HOM05D001217 ORTHO05D001097 4.1e-07 62.4 65 43.1
Psat6g068080 Pisum sativum HOM05D001217 ORTHO05D001097 7.0e-07 61.6 64 43.8
TPR.G34714 Trifolium pratense HOM05D001217 ORTHO05D001097 9.1e-07 61.2 64 43.8


User provided reference genes

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