Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009257 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 3.9e-50 201.1 94 100.0
Lj2g0011631 Lotus japonicus HOM05D003576 ORTHO05D004124 4.5e-38 161.0 83 90.4
Thecc.10G074000 Theobroma cacao HOM05D003576 ORTHO05D004124 4.5e-38 161.0 83 89.2
Cc02_g11340 Coffea canephora HOM05D003576 ORTHO05D004124 5.8e-38 160.6 83 89.2
Rhsim03G0120500 Rhododendron simsii HOM05D003576 ORTHO05D004124 5.8e-38 160.6 83 89.2
vmacro07071 Vaccinium macrocarpon HOM05D003576 ORTHO05D004124 5.8e-38 160.6 83 89.2
EL10Ac2g03301 Beta vulgaris HOM05D003576 ORTHO05D004124 7.6e-38 160.2 83 88.0
CSS0018972 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 9.9e-38 159.8 83 89.2
CSS0040774 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 9.9e-38 159.8 83 89.2
CiPaw.01G272700 Carya illinoinensis HOM05D003576 ORTHO05D004124 9.9e-38 159.8 83 89.2
COL.COLO4_23659 Corchorus olitorius HOM05D003576 ORTHO05D004124 9.9e-38 159.8 83 89.2
Hma1.2p1_0382F.1_g140100 Hydrangea macrophylla HOM05D003576 ORTHO05D004124 9.9e-38 159.8 83 90.4
Potri.008G039500 Populus trichocarpa HOM05D003576 ORTHO05D004124 9.9e-38 159.8 83 91.6
DCAR_019104 Daucus carota HOM05D003576 ORTHO05D004124 1.3e-37 159.5 83 89.2
QL08p055786 Quercus lobata HOM05D003576 ORTHO05D004124 1.3e-37 159.5 83 88.0
Sabra08G0027100 Salix brachista HOM05D003576 ORTHO05D004124 1.3e-37 159.5 83 91.6
Actinidia06773 Actinidia chinensis HOM05D003576 ORTHO05D004124 1.7e-37 159.1 83 88.0
Eucgr.J01085 Eucalyptus grandis HOM05D003576 ORTHO05D004124 2.2e-37 158.7 83 89.2
Glyma.16G155600 Glycine max HOM05D003576 ORTHO05D004124 2.2e-37 158.7 83 86.7
CSS0030842 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 2.9e-37 158.3 81 92.6
Dinv31323 Davidia involucrata HOM05D003576 ORTHO05D004124 2.9e-37 158.3 83 88.0
Glyma.02G074100 Glycine max HOM05D003576 ORTHO05D004124 2.9e-37 158.3 83 86.7
Gohir.A10G205700 Gossypium hirsutum HOM05D003576 ORTHO05D004124 2.9e-37 158.3 83 88.0
Gohir.D10G214000 Gossypium hirsutum HOM05D003576 ORTHO05D004124 2.9e-37 158.3 83 88.0
Gorai.011G239400 Gossypium raimondii HOM05D003576 ORTHO05D004124 2.9e-37 158.3 83 88.0
Medtr6g033535 Medicago truncatula HOM05D003576 ORTHO05D004124 2.9e-37 158.3 83 88.0
Lj3A882G53 Lonicera japonica HOM05D003576 ORTHO05D004124 3.8e-37 157.9 83 88.0
Lalb_Chr03g0035911 Lupinus albus HOM05D003576 ORTHO05D004124 3.8e-37 157.9 83 86.7
Duzib114G0196 Durio zibethinus HOM05D003576 ORTHO05D004124 4.9e-37 157.5 83 88.0
PGR142G1591 Punica granatum HOM05D003576 ORTHO05D004124 4.9e-37 157.5 83 88.0
Actinidia38283 Actinidia chinensis HOM05D003576 ORTHO05D004124 6.4e-37 157.1 83 86.7
Ca_27771_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 6.4e-37 157.1 83 85.5
Dinv36441 Davidia involucrata HOM05D003576 ORTHO05D004124 6.4e-37 157.1 83 86.7
Manes.07G100300 Manihot esculenta HOM05D003576 ORTHO05D004124 6.4e-37 157.1 83 88.0
Sabra10G0172200 Salix brachista HOM05D003576 ORTHO05D004124 6.4e-37 157.1 83 89.2
Lalb_Chr01g0010001 Lupinus albus HOM05D003576 ORTHO05D004124 1.1e-36 156.4 83 85.5
Phvul.004G083500 Phaseolus vulgaris HOM05D003576 ORTHO05D004124 1.1e-36 156.4 83 85.5
Potri.010G222800 Populus trichocarpa HOM05D003576 ORTHO05D004124 1.4e-36 156.0 83 89.2
Prupe.2G213500 Prunus persica HOM05D003576 ORTHO05D004124 1.4e-36 156.0 83 85.5
AUR62037754 Chenopodium quinoa HOM05D003576 ORTHO05D004124 1.9e-36 155.6 85 83.5
GSVIVG01016273001 Vitis vinifera HOM05D003576 ORTHO05D004124 1.9e-36 155.6 83 88.0
FvH4_2g18840 Fragaria vesca HOM05D003576 ORTHO05D004124 2.4e-36 155.2 83 84.3
FAN15G0532 Fragaria x ananassa HOM05D003576 ORTHO05D004124 2.4e-36 155.2 83 84.3
FAN24G3530 Fragaria x ananassa HOM05D003576 ORTHO05D004124 2.4e-36 155.2 83 84.3
unitig_699.g19224 Utricularia gibba HOM05D003576 ORTHO05D004124 2.4e-36 155.2 83 85.5
Atru.chr12.756 Acer truncatum HOM05D003576 ORTHO05D004124 4.2e-36 154.5 83 86.7
Atru.chr12.780 Acer truncatum HOM05D003576 ORTHO05D004124 4.2e-36 154.5 83 86.7
CANSAT56G0320 Cannabis sativa HOM05D003576 ORTHO05D004124 4.2e-36 154.5 83 83.1
TWI15G0705 Tripterygium wilfordii HOM05D003576 ORTHO05D004124 4.2e-36 154.5 83 86.7
MD01G1108400 Malus domestica HOM05D003576 ORTHO05D004124 5.4e-36 154.1 83 84.3
Sc20g0001840 Simmondsia chinensis HOM05D003576 ORTHO05D004124 5.4e-36 154.1 83 85.5
AUR62018250 Chenopodium quinoa HOM05D003576 ORTHO05D004124 7.1e-36 153.7 83 84.3
MD07G1174600 Malus domestica HOM05D003576 ORTHO05D004124 7.1e-36 153.7 83 84.3
Ciclev10032124m.g Citrus clementina HOM05D003576 ORTHO05D004124 1.2e-35 152.9 83 85.5
arahy.Tifrunner.gnm1.ann1.33B581 Arachis hypogaea HOM05D003576 ORTHO05D004124 1.6e-35 152.5 83 84.3
arahy.Tifrunner.gnm1.ann1.THE0XD Arachis hypogaea HOM05D003576 ORTHO05D004124 1.6e-35 152.5 83 84.3
ClCG05G021030 Citrullus lanatus HOM05D003576 ORTHO05D004124 2.1e-35 152.1 83 84.3
MELO3C012428.2 Cucumis melo HOM05D003576 ORTHO05D004124 2.1e-35 152.1 83 84.3
CsaV3_5G036280 Cucumis sativus L. HOM05D003576 ORTHO05D004124 2.1e-35 152.1 83 84.3
MSTRG.374 Avicennia marina HOM05D003576 ORTHO05D004124 2.7e-35 151.8 83 83.1
CAN.G694.86 Capsicum annuum HOM05D003576 ORTHO05D004124 3.5e-35 151.4 83 85.5
Cfa021515 Carpinus fangiana HOM05D003576 ORTHO05D004124 3.5e-35 151.4 83 86.7
Nitab4.5_0009985g0010 Nicotiana tabacum HOM05D003576 ORTHO05D004124 6.0e-35 150.6 83 84.3
RcHm_v2.0_Chr6g0284661 Rosa chinensis HOM05D003576 ORTHO05D004124 6.0e-35 150.6 83 83.1
Peaxi162Scf01175g00019 Petunia axillaris HOM05D003576 ORTHO05D004124 7.9e-35 150.2 83 84.3
THA.LOC104827300 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 7.9e-35 150.2 83 81.9
TPR.G36712 Trifolium pratense HOM05D003576 ORTHO05D004124 7.9e-35 150.2 83 84.3
CiPaw.02G173900 Carya illinoinensis HOM05D003576 ORTHO05D004124 1.0e-34 149.8 83 84.3
Nitab4.5_0000476g0030 Nicotiana tabacum HOM05D003576 ORTHO05D004124 1.0e-34 149.8 83 83.1
MELO3C019797.2 Cucumis melo HOM05D003576 ORTHO05D004124 1.8e-34 149.1 83 81.9
SalBow3G2401 Salvia bowleyana HOM05D003576 ORTHO05D004124 1.8e-34 149.1 83 80.7
CARHR199870 Cardamine hirsuta HOM05D003576 ORTHO05D004124 2.3e-34 148.7 83 81.9
ECA238G1405 Erigeron canadensis HOM05D003576 ORTHO05D004124 2.3e-34 148.7 83 79.5
AL6G24180 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 3.9e-34 147.9 83 80.7
ClCG08G007510 Citrullus lanatus HOM05D003576 ORTHO05D004124 3.9e-34 147.9 83 80.7
Sed0008938 Sechium edule HOM05D003576 ORTHO05D004124 5.1e-34 147.5 83 80.7
ECA232G3526 Erigeron canadensis HOM05D003576 ORTHO05D004124 6.7e-34 147.1 83 80.7
Migut.F01985 Erythranthe guttata HOM05D003576 ORTHO05D004124 6.7e-34 147.1 83 80.7
Solyc05g056110.3 Solanum lycopersicum HOM05D003576 ORTHO05D004124 1.5e-33 146.0 83 80.7
Sopen05g034520 Solanum pennellii HOM05D003576 ORTHO05D004124 1.5e-33 146.0 83 80.7
Lsat_1_v5_gn_9_69180 Lactuca sativa HOM05D003576 ORTHO05D004124 2.5e-33 145.2 83 79.5
HanXRQChr15g0496951 Helianthus annuus HOM05D003576 ORTHO05D004124 3.3e-33 144.8 83 79.5
AT5G13570 Arabidopsis thaliana HOM05D003576 ORTHO05D004124 4.3e-33 144.4 83 78.3
CsaV3_6G036430 Cucumis sativus L. HOM05D003576 ORTHO05D004124 4.3e-33 144.4 83 79.5
SHI19520 Sapria himalayana HOM05D003576 ORTHO05D004124 4.3e-33 144.4 83 78.3
Carub.0006s1173 Capsella rubella HOM05D003576 ORTHO05D004124 9.6e-33 143.3 83 78.3
ATR0048G008 Amborella trichopoda HOM05D003576 ORTHO05D004124 1.6e-32 142.5 83 80.7
BcaB01g05348 Brassica carinata HOM05D003576 ORTHO05D004124 1.6e-32 142.5 83 79.5
BcaC04g19105 Brassica carinata HOM05D003576 ORTHO05D004124 1.6e-32 142.5 83 79.5
BcaNung01897 Brassica carinata HOM05D003576 ORTHO05D004124 1.6e-32 142.5 83 79.5
BcaNung06333 Brassica carinata HOM05D003576 ORTHO05D004124 1.6e-32 142.5 83 79.5
A02p02030 Brassica napus HOM05D003576 ORTHO05D004124 1.6e-32 142.5 83 79.5
C02p06240 Brassica napus HOM05D003576 ORTHO05D004124 1.6e-32 142.5 83 79.5
BolC2t06566H Brassica oleracea HOM05D003576 ORTHO05D004124 1.6e-32 142.5 83 79.5
CDE03G0119 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 1.6e-32 142.5 84 78.6
CDE04G0074 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 1.6e-32 142.5 84 78.6
BcaC04g19106 Brassica carinata HOM05D003576 ORTHO05D004124 2.1e-32 142.1 83 78.3
BolC9t59197H Brassica oleracea HOM05D003576 ORTHO05D004124 2.1e-32 142.1 83 78.3
Thhalv10014094m.g Eutrema salsugineum HOM05D003576 ORTHO05D004124 2.1e-32 142.1 83 78.3
Sp6g30460 Schrenkiella parvula HOM05D003576 ORTHO05D004124 2.1e-32 142.1 83 79.5
Sed0006763 Sechium edule HOM05D003576 ORTHO05D004124 3.7e-32 141.4 83 75.9
C09p63530 Brassica napus HOM05D003576 ORTHO05D004124 8.1e-32 140.2 83 77.1
Nn2g13102 Nelumbo nucifera HOM05D003576 ORTHO05D004124 1.1e-31 139.8 84 76.2
Migut.F01761 Erythranthe guttata HOM05D003576 ORTHO05D004124 1.4e-31 139.4 83 77.1
A10p24700 Brassica napus HOM05D003576 ORTHO05D004124 1.8e-31 139.0 83 75.9
BraA10t44533Z Brassica rapa HOM05D003576 ORTHO05D004124 1.8e-31 139.0 83 75.9
TAR633G2490 Trochodendron aralioides HOM05D003576 ORTHO05D004124 1.8e-31 139.0 84 77.4
SGA_v2.0_scaffold100G29594 Striga asiatica HOM05D003576 ORTHO05D004124 2.4e-31 138.7 95 71.6
PSO339G5183 Papaver somniferum HOM05D003576 ORTHO05D004124 3.1e-31 138.3 84 78.6
PSO063G6153 Papaver somniferum HOM05D003576 ORTHO05D004124 4.0e-31 137.9 84 78.6
Aqoxy1G02388 Aquilegia oxysepala HOM05D003576 ORTHO05D004124 1.2e-30 136.3 84 78.6
Zm00001eb273430 Zea mays HOM05D003576 ORTHO05D004124 1.5e-30 136.0 84 78.6
BcaB06g27487 Brassica carinata HOM05D003576 ORTHO05D004124 4.5e-30 134.4 85 77.6
PGR044G0669 Punica granatum HOM05D003576 ORTHO05D004124 4.5e-30 134.4 82 75.6
TAR636G0323 Trochodendron aralioides HOM05D003576 ORTHO05D004124 5.8e-30 134.0 84 73.8
C04p47100 Brassica napus HOM05D003576 ORTHO05D004124 1.3e-29 132.9 85 76.5
BolC4t26304H Brassica oleracea HOM05D003576 ORTHO05D004124 1.3e-29 132.9 85 76.5
THA.LOC104809882 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 1.7e-29 132.5 83 73.5
A04p13320 Brassica napus HOM05D003576 ORTHO05D004124 2.2e-29 132.1 85 76.5
PSO339G2752 Papaver somniferum HOM05D003576 ORTHO05D004124 3.8e-29 131.3 84 72.6
PSO384G2156 Papaver somniferum HOM05D003576 ORTHO05D004124 4.9e-29 131.0 84 71.4
BraA04t16990Z Brassica rapa HOM05D003576 ORTHO05D004124 1.1e-28 129.8 85 75.3
Aa31LG11G7770 Aethionema arabicum HOM05D003576 ORTHO05D004124 1.4e-28 129.4 126 54.8
Mapoly0154s0022 Marchantia polymorpha HOM05D003576 ORTHO05D004124 1.4e-28 129.4 84 72.6
A04p13360 Brassica napus HOM05D003576 ORTHO05D004124 3.2e-28 128.3 85 72.9
BraA04t16993Z Brassica rapa HOM05D003576 ORTHO05D004124 3.2e-28 128.3 85 72.9
BraA04t16999Z Brassica rapa HOM05D003576 ORTHO05D004124 3.2e-28 128.3 85 72.9
C04p47110 Brassica napus HOM05D003576 ORTHO05D004124 4.2e-28 127.9 85 74.1
BolC4t26305H Brassica oleracea HOM05D003576 ORTHO05D004124 4.2e-28 127.9 85 74.1
BolC4t26310H Brassica oleracea HOM05D003576 ORTHO05D004124 4.2e-28 127.9 85 74.1
BraA04t16996Z Brassica rapa HOM05D003576 ORTHO05D004124 4.2e-28 127.9 85 72.9
HPP92_020748 Vanilla planifolia HOM05D003576 ORTHO05D004124 7.1e-28 127.1 84 73.8
BcaNung01144 Brassica carinata HOM05D003576 ORTHO05D004124 9.3e-28 126.7 82 74.4
A04p13340 Brassica napus HOM05D003576 ORTHO05D004124 9.3e-28 126.7 85 72.9
A04p13380 Brassica napus HOM05D003576 ORTHO05D004124 9.3e-28 126.7 85 72.9
A04p13410 Brassica napus HOM05D003576 ORTHO05D004124 9.3e-28 126.7 85 72.9
Os02g0805900 Oryza sativa ssp. japonica HOM05D003576 ORTHO05D004124 9.3e-28 126.7 84 73.8
BraA04t16991Z Brassica rapa HOM05D003576 ORTHO05D004124 1.2e-27 126.3 85 71.8
Pp3c1_22690 Physcomitrium patens HOM05D003576 ORTHO05D004124 1.2e-27 126.3 84 67.9
SMO356G0089 Selaginella moellendorffii HOM05D003576 ORTHO05D004124 1.6e-27 125.9 84 65.5
Pp3c2_16830 Physcomitrium patens HOM05D003576 ORTHO05D004124 2.7e-27 125.2 84 67.9
Sp7g03020 Schrenkiella parvula HOM05D003576 ORTHO05D004124 7.9e-27 123.6 86 69.8
BraA04t16997Z Brassica rapa HOM05D003576 ORTHO05D004124 1.0e-26 123.2 87 71.3
Pp3c10_5620 Physcomitrium patens HOM05D003576 ORTHO05D004124 3.9e-26 121.3 84 66.7
BcaB06g27489 Brassica carinata HOM05D003576 ORTHO05D004124 6.7e-26 120.6 86 70.9
BcaB06g27496 Brassica carinata HOM05D003576 ORTHO05D004124 6.7e-26 120.6 86 70.9
AagrBONN_evm.TU.Sc2ySwM_228.4941 Anthoceros agrestis HOM05D003576 ORTHO05D004124 1.5e-25 119.4 84 65.5
CBR_g38931 Chara braunii HOM05D003576 ORTHO05D004124 4.8e-24 114.4 84 63.1
CBR_g39890 Chara braunii HOM05D003576 ORTHO05D004124 6.2e-24 114.0 84 64.3
CSS0033760 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.2e-22 109.8 55 94.5
CSS0032612 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.5e-22 109.4 55 96.4
CSS0050114 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.5e-22 109.4 55 96.4
CSS0046774 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 3.4e-22 108.2 55 94.5
BcaC04g19104 Brassica carinata HOM05D003576 ORTHO05D004124 5.8e-22 107.5 71 74.6
Sp7g01550 Schrenkiella parvula HOM05D003576 ORTHO05D004124 4.6e-19 97.8 75 61.3
AL4G23990 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 1.0e-18 96.7 85 54.1
BcaB06g27491 Brassica carinata HOM05D003576 ORTHO05D004124 2.5e-17 92.0 72 65.3
Ca_07562_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 2.5e-17 92.0 61 73.8
Cfa023847 Carpinus fangiana HOM05D003576 ORTHO05D004124 3.3e-17 91.7 89 53.9
Sp3g29060 Schrenkiella parvula HOM05D003576 ORTHO05D004124 7.4e-17 90.5 70 61.4
C03p07100 Brassica napus HOM05D002836 ORTHO05D003107 9.7e-17 90.1 60 70.0
Oeu017646.1 Olea europaea HOM05D003576 ORTHO05D004124 9.7e-17 90.1 52 82.7
BcaB06g27493 Brassica carinata HOM05D003576 ORTHO05D004124 1.3e-16 89.7 70 65.7
Haze_16891 Corylus avellana HOM05D003576 ORTHO05D004124 4.8e-16 87.8 51 86.3
Psat1g098680 Pisum sativum HOM05D003576 ORTHO05D004124 6.3e-16 87.4 52 78.8
Ah.16g106400 Amaranthus hybridus HOM05D003576 ORTHO05D004124 1.2e-14 83.2 51 80.4
Cpa.g.sc53.83 Carica papaya HOM05D003576 ORTHO05D004124 1.2e-14 83.2 51 80.4
PRCOL_00003742 Prasinoderma coloniale HOM05D003576 ORTHO05D004124 7.7e-14 80.5 84 46.4
BolC3t13209H Brassica oleracea HOM05D003576 ORTHO05D004124 2.9e-13 78.6 53 71.7
MCO14G142 Micromonas commoda HOM05D003576 ORTHO05D004124 6.5e-13 77.4 91 45.1
FAN15G1487 Fragaria x ananassa HOM05D003576 ORTHO05D004124 2.5e-12 75.5 33 90.9
Ah.10g032640 Amaranthus hybridus HOM05D003576 ORTHO05D004124 4.2e-12 74.7 51 72.5
SEGI_06233 Sequoiadendron giganteum HOM05D003576 ORTHO05D004124 7.2e-12 73.9 72 51.4
Cre07.g344850 Chlamydomonas reinhardtii HOM05D003576 ORTHO05D004124 3.6e-11 71.6 86 44.2
Zm00001eb305720 Zea mays HOM05D003576 ORTHO05D004124 2.3e-10 68.9 34 88.2
Zm00001eb290030 Zea mays HOM05D003576 ORTHO05D004124 6.7e-10 67.4 33 87.9
Zm00001eb366000 Zea mays HOM05D003576 ORTHO05D004124 2.8e-08 62.0 33 84.8
Sp7g03350 Schrenkiella parvula HOM05D003576 ORTHO05D004124 6.3e-08 60.8 42 69.0


User provided reference genes

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