Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009232 Camellia sinensis var. sinensis HOM05D003148 ORTHO05D003894 1.2e-113 413.3 230 100.0
CSS0048264 Camellia sinensis var. sinensis HOM05D003148 ORTHO05D003894 9.9e-39 164.5 154 59.7
Actinidia09911 Actinidia chinensis HOM05D003148 ORTHO05D003894 4.1e-37 159.1 152 57.9
Dinv40737 Davidia involucrata HOM05D003148 ORTHO05D003894 1.3e-35 154.1 157 66.2
Lj8A168T100 Lonicera japonica HOM05D003148 ORTHO05D003894 8.6e-35 151.4 158 53.8
vmacro11740 Vaccinium macrocarpon HOM05D003148 ORTHO05D003894 8.6e-35 151.4 154 56.5
MBI02_g28334_MAGBIO Magnolia biondii HOM05D003148 ORTHO05D003894 1.1e-34 151.0 159 63.5
Hma1.2p1_0938F.1_g239220 Hydrangea macrophylla HOM05D003148 ORTHO05D003894 2.1e-33 146.7 152 56.6
Rhsim06G0215400 Rhododendron simsii HOM05D003148 ORTHO05D003894 2.8e-33 146.4 152 54.6
Rhsim04G0002300 Rhododendron simsii HOM05D003148 ORTHO05D003894 6.2e-33 145.2 155 53.5
RhsimUnG0252100 Rhododendron simsii HOM05D003148 ORTHO05D003894 8.1e-33 144.8 155 53.5
Nn1g07107 Nelumbo nucifera HOM05D003148 ORTHO05D003894 1.1e-32 144.4 152 54.6
Thecc.07G043600 Theobroma cacao HOM05D003148 ORTHO05D003894 1.1e-32 144.4 152 54.6
Nitab4.5_0000622g0240 Nicotiana tabacum HOM05D003148 ORTHO05D003894 1.8e-32 143.7 152 52.6
Nitab4.5_0013016g0020 Nicotiana tabacum HOM05D003148 ORTHO05D003894 2.4e-32 143.3 152 52.6
Cfa020382 Carpinus fangiana HOM05D003148 ORTHO05D003894 6.8e-32 141.7 153 52.3
TAR624G0080 Trochodendron aralioides HOM05D003148 ORTHO05D003894 6.8e-32 141.7 153 55.6
vmacro09733 Vaccinium macrocarpon HOM05D003148 ORTHO05D003894 6.8e-32 141.7 208 45.2
Haze_09651 Corylus avellana HOM05D003148 ORTHO05D003894 1.5e-31 140.6 154 51.3
Sopen07g032480 Solanum pennellii HOM05D003148 ORTHO05D003894 2.0e-31 140.2 161 49.7
Nitab4.5_0000397g0350 Nicotiana tabacum HOM05D003148 ORTHO05D003894 3.4e-31 139.4 152 51.3
Peaxi162Scf00450g00842 Petunia axillaris HOM05D003148 ORTHO05D003894 4.4e-31 139.0 157 52.9
CiPaw.12G128200 Carya illinoinensis HOM05D003148 ORTHO05D003894 1.3e-30 137.5 153 52.3
Lj1C869T19 Lonicera japonica HOM05D003148 ORTHO05D003894 1.3e-30 137.5 152 51.3
Solyc07g064330.3 Solanum lycopersicum HOM05D003148 ORTHO05D003894 1.3e-30 137.5 152 51.3
PGSC0003DMG402013919 Solanum tuberosum HOM05D003148 ORTHO05D003894 1.3e-30 137.5 152 50.7
GSVIVG01014163001 Vitis vinifera HOM05D003148 ORTHO05D003894 1.3e-30 137.5 155 57.4
AUR62030324 Chenopodium quinoa HOM05D003148 ORTHO05D003894 1.7e-30 137.1 152 52.6
arahy.Tifrunner.gnm1.ann1.IVZB0M Arachis hypogaea HOM05D003148 ORTHO05D003894 2.9e-30 136.3 153 52.3
CAN.G337.107 Capsicum annuum HOM05D003148 ORTHO05D003894 2.9e-30 136.3 157 50.3
CiPaw.11G187400 Carya illinoinensis HOM05D003148 ORTHO05D003894 3.8e-30 136.0 153 49.0
Haze_09649 Corylus avellana HOM05D003148 ORTHO05D003894 3.8e-30 136.0 154 51.9
arahy.Tifrunner.gnm1.ann1.5UV8SN Arachis hypogaea HOM05D003148 ORTHO05D003894 4.9e-30 135.6 153 51.6
AUR62018343 Chenopodium quinoa HOM05D003148 ORTHO05D003894 6.4e-30 135.2 152 52.0
MSTRG.14430 Avicennia marina HOM05D003148 ORTHO05D003894 1.9e-29 133.7 155 52.3
Duzib213G0065 Durio zibethinus HOM05D003148 ORTHO05D003894 4.2e-29 132.5 152 50.7
Lsat_1_v5_gn_1_29100 Lactuca sativa HOM05D003148 ORTHO05D003894 4.2e-29 132.5 153 51.6
Ah.13g076880 Amaranthus hybridus HOM05D001433 ORTHO05D005172 9.2e-29 131.3 153 49.7
Actinidia35330 Actinidia chinensis HOM05D003148 ORTHO05D003894 1.2e-28 131.0 153 62.1
Nn1g03580 Nelumbo nucifera HOM05D003148 ORTHO05D003894 1.6e-28 130.6 167 48.5
DCAR_022553 Daucus carota HOM05D003148 ORTHO05D003894 2.1e-28 130.2 146 52.1
AT1G50840 Arabidopsis thaliana HOM05D003148 ORTHO05D003894 2.7e-28 129.8 151 48.3
EL10Ac3g07232 Beta vulgaris HOM05D003148 ORTHO05D003894 3.5e-28 129.4 152 49.3
Glyma.14G025300 Glycine max HOM05D003148 ORTHO05D003894 3.5e-28 129.4 152 50.0
Oeu042923.1 Olea europaea HOM05D003148 ORTHO05D003894 3.5e-28 129.4 153 51.6
Gohir.D01G065200 Gossypium hirsutum HOM05D003148 ORTHO05D003894 4.6e-28 129.0 152 47.4
Gorai.002G086900 Gossypium raimondii HOM05D003148 ORTHO05D003894 4.6e-28 129.0 152 47.4
QL08p011843 Quercus lobata HOM05D003148 ORTHO05D003894 4.6e-28 129.0 153 49.7
COL.COLO4_09635 Corchorus olitorius HOM05D003148 ORTHO05D003894 6.0e-28 128.6 153 50.3
Glyma.02G289700 Glycine max HOM05D003148 ORTHO05D003894 7.8e-28 128.3 153 50.3
Lj4g0014990 Lotus japonicus HOM05D003148 ORTHO05D003894 7.8e-28 128.3 152 49.3
Manes.14G165664 Manihot esculenta HOM05D003148 ORTHO05D003894 7.8e-28 128.3 154 53.9
Hund19099 Selenicereus undatus HOM05D003148 ORTHO05D003894 7.8e-28 128.3 152 49.3
Glyma.19G036300 Glycine max HOM05D003148 ORTHO05D003894 1.0e-27 127.9 152 50.0
Lj6g0019529 Lotus japonicus HOM05D003148 ORTHO05D003894 1.0e-27 127.9 152 48.7
BcaB02g11185 Brassica carinata HOM05D003148 ORTHO05D003894 1.3e-27 127.5 150 48.7
Gohir.A01G078100 Gossypium hirsutum HOM05D003148 ORTHO05D003894 1.3e-27 127.5 152 47.4
BcaC05g27391 Brassica carinata HOM05D003148 ORTHO05D003894 2.3e-27 126.7 150 48.0
Lalb_Chr04g0248571 Lupinus albus HOM05D003148 ORTHO05D003894 2.3e-27 126.7 152 47.4
VMungo0647G1963 Vigna mungo HOM05D003148 ORTHO05D003894 3.9e-27 125.9 152 49.3
C05p33280 Brassica napus HOM05D003148 ORTHO05D003894 5.1e-27 125.6 150 47.3
BolC5t32054H Brassica oleracea HOM05D003148 ORTHO05D003894 5.1e-27 125.6 150 47.3
CDE05G0870 Ceratophyllum demersum HOM05D003148 ORTHO05D003894 6.6e-27 125.2 152 49.3
Cfa020383 Carpinus fangiana HOM05D003148 ORTHO05D003894 8.7e-27 124.8 153 48.4
ECA246G3119 Erigeron canadensis HOM05D003148 ORTHO05D003894 8.7e-27 124.8 153 48.4
HanXRQChr05g0159091 Helianthus annuus HOM05D003148 ORTHO05D003894 8.7e-27 124.8 152 47.4
PGR083G0390 Punica granatum HOM05D003148 ORTHO05D003894 8.7e-27 124.8 155 50.3
A05p19930 Brassica napus HOM05D003148 ORTHO05D003894 1.1e-26 124.4 150 47.3
BraA05t20898Z Brassica rapa HOM05D003148 ORTHO05D003894 1.1e-26 124.4 150 47.3
HanXRQChr05g0159101 Helianthus annuus HOM05D003148 ORTHO05D003894 1.5e-26 124.0 153 49.7
Hund24589 Selenicereus undatus HOM05D003148 ORTHO05D003894 1.5e-26 124.0 152 47.4
Carub.0001s3979 Capsella rubella HOM05D003148 ORTHO05D003894 1.9e-26 123.6 161 45.3
TPR.G29117 Trifolium pratense HOM05D003148 ORTHO05D003894 1.9e-26 123.6 152 46.7
Aqoxy3G04136 Aquilegia oxysepala HOM05D003148 ORTHO05D003894 2.5e-26 123.2 152 47.4
Aqoxy1G03292 Aquilegia oxysepala HOM05D003148 ORTHO05D003894 3.3e-26 122.9 155 47.7
arahy.Tifrunner.gnm1.ann1.FV4ICK Arachis hypogaea HOM05D003148 ORTHO05D003894 3.3e-26 122.9 154 47.4
Oeu062599.1 Olea europaea HOM05D003148 ORTHO05D003894 3.3e-26 122.9 153 47.7
arahy.Tifrunner.gnm1.ann1.SAW44B Arachis hypogaea HOM05D003148 ORTHO05D003894 4.3e-26 122.5 154 48.1
CARHR096300 Cardamine hirsuta HOM05D003148 ORTHO05D003894 5.6e-26 122.1 156 45.5
Sp1g37600 Schrenkiella parvula HOM05D003148 ORTHO05D003894 5.6e-26 122.1 154 48.7
ATR0752G224 Amborella trichopoda HOM05D003148 ORTHO05D003894 7.3e-26 121.7 157 47.1
Thhalv10011195m.g Eutrema salsugineum HOM05D003148 ORTHO05D003894 7.3e-26 121.7 159 45.3
Aa31LG8G7340 Aethionema arabicum HOM05D003148 ORTHO05D003894 9.6e-26 121.3 156 46.2
Lalb_Chr18g0049911 Lupinus albus HOM05D003148 ORTHO05D003894 9.6e-26 121.3 152 48.7
Duzib170G0998 Durio zibethinus HOM05D003148 ORTHO05D003894 1.3e-25 120.9 152 46.7
ClCG10G005550 Citrullus lanatus HOM05D003148 ORTHO05D003894 1.6e-25 120.6 156 50.6
MSTRG.12966 Avicennia marina HOM05D003148 ORTHO05D003894 2.1e-25 120.2 157 49.7
Ca_06307_v3 Cicer arietinum L. HOM05D003148 ORTHO05D003894 2.1e-25 120.2 152 47.4
Psat5g183240 Pisum sativum HOM05D003148 ORTHO05D003894 2.1e-25 120.2 152 47.4
unitig_52.g17354 Utricularia gibba HOM05D003148 ORTHO05D003894 2.1e-25 120.2 154 49.4
Sc19g0008220 Simmondsia chinensis HOM05D003148 ORTHO05D003894 2.8e-25 119.8 153 45.8
Migut.H01840 Erythranthe guttata HOM05D003148 ORTHO05D003894 3.6e-25 119.4 156 48.1
Psat2g015200 Pisum sativum HOM05D003148 ORTHO05D003894 4.8e-25 119.0 147 49.0
Medtr5g092100 Medicago truncatula HOM05D003148 ORTHO05D003894 6.2e-25 118.6 152 47.4
Aa31LG10G3300 Aethionema arabicum HOM05D003148 ORTHO05D003894 8.1e-25 118.2 154 47.4
Ca_14812_v3 Cicer arietinum L. HOM05D003148 ORTHO05D003894 8.1e-25 118.2 152 47.4
PSO017G6339 Papaver somniferum HOM05D003148 ORTHO05D003894 1.1e-24 117.9 155 43.9
FvH4_3g22230 Fragaria vesca HOM05D003148 ORTHO05D003894 1.4e-24 117.5 152 44.7
FAN11G2520 Fragaria x ananassa HOM05D003148 ORTHO05D003894 1.4e-24 117.5 152 44.7
FAN16G3453 Fragaria x ananassa HOM05D003148 ORTHO05D003894 1.8e-24 117.1 152 44.7
CARHR040890 Cardamine hirsuta HOM05D003148 ORTHO05D003894 3.1e-24 116.3 159 42.8
AL1G58530 Arabidopsis lyrata HOM05D003148 ORTHO05D003894 4.0e-24 115.9 151 45.0
MELO3C025395.2 Cucumis melo HOM05D003148 ORTHO05D003894 4.0e-24 115.9 156 49.4
Carub.0003s2050 Capsella rubella HOM05D003148 ORTHO05D003894 5.3e-24 115.5 155 47.1
FAN21G1173 Fragaria x ananassa HOM05D003148 ORTHO05D003894 5.3e-24 115.5 152 44.1
Glyma.08G313400 Glycine max HOM05D003148 ORTHO05D003894 5.3e-24 115.5 152 45.4
Phvul.006G039400 Phaseolus vulgaris HOM05D003148 ORTHO05D003894 5.3e-24 115.5 153 45.1
Sed0003151 Sechium edule HOM05D003148 ORTHO05D003894 6.9e-24 115.2 155 48.4
Medtr3g050110 Medicago truncatula HOM05D003148 ORTHO05D003894 9.0e-24 114.8 152 46.7
Eucgr.F00964 Eucalyptus grandis HOM05D003148 ORTHO05D003894 1.5e-23 114.0 157 42.7
RcHm_v2.0_Chr5g0038301 Rosa chinensis HOM05D003148 ORTHO05D003894 1.5e-23 114.0 155 45.2
Medtr3g050140 Medicago truncatula HOM05D003148 ORTHO05D003894 2.0e-23 113.6 149 47.0
AL3G34360 Arabidopsis lyrata HOM05D003148 ORTHO05D003894 3.4e-23 112.8 156 45.5
AT3G20540 Arabidopsis thaliana HOM05D003148 ORTHO05D003894 4.4e-23 112.5 156 46.2
PSO541G1561 Papaver somniferum HOM05D003148 ORTHO05D003894 4.4e-23 112.5 152 42.8
PSO675G7850 Papaver somniferum HOM05D003148 ORTHO05D003894 4.4e-23 112.5 152 43.4
Phvul.008G265700 Phaseolus vulgaris HOM05D003148 ORTHO05D003894 4.4e-23 112.5 152 46.7
CsaV3_3G005270 Cucumis sativus L. HOM05D003148 ORTHO05D003894 2.2e-22 110.2 157 49.0
TPR.G95 Trifolium pratense HOM05D003148 ORTHO05D030578 3.8e-22 109.4 152 42.8
TAR626G0663 Trochodendron aralioides HOM05D003148 ORTHO05D003894 4.9e-22 109.0 85 61.2
Ciclev10007282m.g Citrus clementina HOM05D003148 ORTHO05D003894 6.4e-22 108.6 152 48.0
Sp3g18540 Schrenkiella parvula HOM05D003148 ORTHO05D003894 8.4e-22 108.2 155 43.9
TWI38G0810 Tripterygium wilfordii HOM05D003148 ORTHO05D003894 1.1e-21 107.8 155 45.2
MD11G1221900 Malus domestica HOM05D003148 ORTHO05D003894 1.4e-21 107.5 157 44.6
Prupe.4G209500 Prunus persica HOM05D003148 ORTHO05D003894 1.9e-21 107.1 152 41.4
SGA_v2.0_scaffold9G05063 Striga asiatica HOM05D003148 ORTHO05D003894 1.9e-21 107.1 154 45.5
C05p43810 Brassica napus HOM05D003148 ORTHO05D003894 3.2e-21 106.3 154 44.2
BolC5t33096H Brassica oleracea HOM05D003148 ORTHO05D003894 3.2e-21 106.3 154 44.2
THA.LOC104817879 Tarenaya hassleriana HOM05D003148 ORTHO05D003894 3.2e-21 106.3 89 57.3
A05p28320 Brassica napus HOM05D003148 ORTHO05D003894 5.4e-21 105.5 160 43.8
BraA05t21714Z Brassica rapa HOM05D003148 ORTHO05D003894 5.4e-21 105.5 160 43.8
Potri.001G421300 Populus trichocarpa HOM05D003148 ORTHO05D003894 5.4e-21 105.5 156 42.9
Cpa.g.sc97.33 Carica papaya HOM05D003148 ORTHO05D003894 1.2e-20 104.4 129 48.8
SEGI_28554 Sequoiadendron giganteum HOM05D003148 ORTHO05D003894 4.6e-20 102.4 161 39.8
Cc05_g13530 Coffea canephora HOM05D003148 ORTHO05D003894 2.3e-19 100.1 153 56.2
Mapoly0039s0093 Marchantia polymorpha HOM05D003148 ORTHO05D003894 1.5e-18 97.4 156 41.0
Sabra11G0122800 Salix brachista HOM05D003148 ORTHO05D003894 3.3e-18 96.3 156 41.0
Sabra16G0286100 Salix brachista HOM05D003148 ORTHO05D003894 4.3e-18 95.9 160 40.6
Os04g0637400 Oryza sativa ssp. japonica HOM05D003148 ORTHO05D003894 1.3e-17 94.4 151 54.3
Potri.011G136900 Populus trichocarpa HOM05D003148 ORTHO05D003894 2.8e-17 93.2 160 41.9
HPP92_009350 Vanilla planifolia HOM05D003148 ORTHO05D003894 2.8e-17 93.2 152 42.1
Atru.chr2.3280 Acer truncatum HOM05D003148 ORTHO05D003894 1.1e-16 91.3 146 44.5
SMO356G0432 Selaginella moellendorffii HOM05D003148 ORTHO05D003894 1.1e-16 91.3 154 38.3
Thhalv10019969m.g Eutrema salsugineum HOM05D003148 ORTHO05D003894 1.8e-16 90.5 173 38.2
CDE01G0619 Ceratophyllum demersum HOM05D003148 ORTHO05D003894 2.4e-16 90.1 152 38.8
Zm00001eb414740 Zea mays HOM05D003148 ORTHO05D003894 6.9e-16 88.6 148 39.9
Os08g0175300 Oryza sativa ssp. japonica HOM05D003148 ORTHO05D003894 9.0e-16 88.2 149 38.3
Zm00001eb431790 Zea mays HOM05D003148 ORTHO05D003894 3.4e-15 86.3 146 48.6
SHI31845 Sapria himalayana HOM05D003148 ORTHO05D003894 6.4e-14 82.0 155 32.9
Pp3c8_21620 Physcomitrium patens HOM05D003148 ORTHO05D003894 8.4e-14 81.6 156 38.5
Lju760A7G20 Lonicera japonica HOM05D003148 ORTHO05D003894 2.4e-13 80.1 124 40.3
Pp3c14_14550 Physcomitrium patens HOM05D003148 ORTHO05D003894 2.4e-13 80.1 155 34.8
Lj6A79G4 Lonicera japonica HOM05D003148 ORTHO05D003894 5.4e-13 79.0 119 39.5
AagrBONN_evm.TU.Sc2ySwM_228.5326 Anthoceros agrestis HOM05D003148 ORTHO05D003894 7.1e-13 78.6 152 35.5
Atru.chr6.8 Acer truncatum HOM05D003148 ORTHO05D003894 9.3e-13 78.2 147 40.8
Lj6C83G1 Lonicera japonica HOM05D003148 ORTHO05D003894 1.6e-12 77.4 117 41.9
Pp3c24_16390 Physcomitrium patens HOM05D003148 ORTHO05D003894 2.7e-12 76.6 162 34.6
CBR_g50948 Chara braunii HOM05D003148 ORTHO05D003894 6.9e-08 62.0 87 37.9


User provided reference genes

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