Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008168 Camellia sinensis var. sinensis HOM05D004365 ORTHO05D005123 1.2e-66 256.1 115 100.0
HanXRQChr05g0145921 Helianthus annuus HOM05D004365 ORTHO05D005123 1.1e-65 253.1 115 99.1
ECA246G3323 Erigeron canadensis HOM05D004365 ORTHO05D005123 2.3e-65 251.9 115 98.3
Actinidia13364 Actinidia chinensis HOM05D004365 ORTHO05D005123 1.2e-64 249.6 115 97.4
Cc03_g00970 Coffea canephora HOM05D004365 ORTHO05D005123 1.5e-64 249.2 115 96.5
Nn4g25611 Nelumbo nucifera HOM05D004365 ORTHO05D005123 2.6e-64 248.4 115 96.5
CiPaw.01G139700 Carya illinoinensis HOM05D004365 ORTHO05D005123 3.4e-64 248.1 115 96.5
Lsat_1_v5_gn_6_116841 Lactuca sativa HOM05D004365 ORTHO05D005123 4.4e-64 247.7 115 94.8
Haze_01277 Corylus avellana HOM05D004365 ORTHO05D005123 5.8e-64 247.3 115 96.5
MSTRG.21775 Avicennia marina HOM05D004365 ORTHO05D005123 9.9e-64 246.5 115 96.5
ClCG05G006460 Citrullus lanatus HOM05D004365 ORTHO05D005123 1.3e-63 246.1 115 94.8
Sed0001961 Sechium edule HOM05D004365 ORTHO05D005123 1.3e-63 246.1 115 94.8
TAR365G0998 Trochodendron aralioides HOM05D004365 ORTHO05D005123 1.3e-63 246.1 115 94.8
CANSAT54G2312 Cannabis sativa HOM05D004365 ORTHO05D005123 2.9e-63 245.0 115 93.9
Oeu016485.1 Olea europaea HOM05D004365 ORTHO05D005123 2.9e-63 245.0 115 93.9
QL06p011635 Quercus lobata HOM05D004365 ORTHO05D005123 2.9e-63 245.0 114 94.7
Aqoxy2G02775 Aquilegia oxysepala HOM05D004365 ORTHO05D005123 3.7e-63 244.6 115 94.8
Sed0006030 Sechium edule HOM05D004365 ORTHO05D005123 3.7e-63 244.6 115 93.9
GSVIVG01035016001 Vitis vinifera HOM05D004365 ORTHO05D005123 3.7e-63 244.6 115 94.8
Hma1.2p1_0013F.1_g008720 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 6.4e-63 243.8 115 93.9
RcHm_v2.0_Chr4g0424591 Rosa chinensis HOM05D004365 ORTHO05D005123 6.4e-63 243.8 115 93.9
Nitab4.5_0000647g0090 Nicotiana tabacum HOM05D004365 ORTHO05D005123 1.1e-62 243.0 115 93.9
Peaxi162Scf00164g01133 Petunia axillaris HOM05D004365 ORTHO05D005123 1.1e-62 243.0 115 93.9
Prupe.1G122000 Prunus persica HOM05D004365 ORTHO05D005123 1.1e-62 243.0 115 93.0
Solyc05g053430.3 Solanum lycopersicum HOM05D004365 ORTHO05D005123 1.1e-62 243.0 115 93.9
Sopen05g031930 Solanum pennellii HOM05D004365 ORTHO05D005123 1.1e-62 243.0 115 93.9
PGSC0003DMG400027213 Solanum tuberosum HOM05D004365 ORTHO05D005123 1.1e-62 243.0 115 93.9
unitig_22.g6354 Utricularia gibba HOM05D004365 ORTHO05D005123 1.4e-62 242.7 115 94.8
Ah.13g072000 Amaranthus hybridus HOM05D004365 ORTHO05D005123 2.4e-62 241.9 115 92.2
TWI73G0828 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 2.4e-62 241.9 115 92.2
FvH4_4g19480 Fragaria vesca HOM05D004365 ORTHO05D005123 4.1e-62 241.1 115 93.0
FAN07G2773 Fragaria x ananassa HOM05D004365 ORTHO05D005123 4.1e-62 241.1 115 93.0
Lalb_Chr18g0058831 Lupinus albus HOM05D004365 ORTHO05D005123 5.4e-62 240.7 115 91.3
PSO761G0124 Papaver somniferum HOM05D004365 ORTHO05D005123 5.4e-62 240.7 115 92.2
Thecc.04G297700 Theobroma cacao HOM05D004365 ORTHO05D005123 5.4e-62 240.7 115 92.2
Ciclev10006256m.g Citrus clementina HOM05D004365 ORTHO05D005123 7.1e-62 240.4 115 91.3
DCAR_023347 Daucus carota HOM05D004365 ORTHO05D005123 9.2e-62 240.0 115 92.2
Phvul.009G256100 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 9.2e-62 240.0 115 93.0
PGR004G2507 Punica granatum HOM05D004365 ORTHO05D005123 9.2e-62 240.0 115 93.9
Sc05g0009630 Simmondsia chinensis HOM05D004365 ORTHO05D005123 9.2e-62 240.0 115 92.2
Gohir.A01G034300 Gossypium hirsutum HOM05D004365 ORTHO05D005123 1.2e-61 239.6 115 91.3
Gohir.D01G023535 Gossypium hirsutum HOM05D004365 ORTHO05D005123 1.2e-61 239.6 115 91.3
Gorai.002G030000 Gossypium raimondii HOM05D004365 ORTHO05D005123 1.2e-61 239.6 115 91.3
MD16G1157100 Malus domestica HOM05D004365 ORTHO05D005123 1.2e-61 239.6 115 92.2
CDE02G0371 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 1.6e-61 239.2 115 91.3
CDE09G0896 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 2.1e-61 238.8 115 90.4
Duzib052G0793 Durio zibethinus HOM05D004365 ORTHO05D005123 2.1e-61 238.8 115 91.3
Glyma.09G037400 Glycine max HOM05D004365 ORTHO05D005123 2.1e-61 238.8 115 91.3
Lj6g0010863 Lotus japonicus HOM05D004365 ORTHO05D005123 2.1e-61 238.8 115 91.3
MD13G1156200 Malus domestica HOM05D004365 ORTHO05D005123 2.1e-61 238.8 115 91.3
PSO210G6722 Papaver somniferum HOM05D004365 ORTHO05D005123 2.1e-61 238.8 115 91.3
Medtr2g034520 Medicago truncatula HOM05D004365 ORTHO05D005123 2.7e-61 238.4 115 92.2
TPR.G5757 Trifolium pratense HOM05D004365 ORTHO05D005123 2.7e-61 238.4 115 92.2
Ca_01870_v3 Cicer arietinum L. HOM05D004365 ORTHO05D005123 4.6e-61 237.7 115 91.3
vmacro15189 Vaccinium macrocarpon HOM05D004365 ORTHO05D005123 4.6e-61 237.7 135 83.0
Psat6g078760 Pisum sativum HOM05D004365 ORTHO05D005123 6.0e-61 237.3 115 92.2
Eucgr.H02666 Eucalyptus grandis HOM05D004365 ORTHO05D005123 7.8e-61 236.9 115 91.3
SMO174G0170 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 1.3e-60 236.1 114 89.5
HPP92_002026 Vanilla planifolia HOM05D004365 ORTHO05D005123 1.3e-60 236.1 115 91.3
Glyma.15G142700 Glycine max HOM05D004365 ORTHO05D005123 1.7e-60 235.7 115 91.3
Manes.15G005400 Manihot esculenta HOM05D004365 ORTHO05D005123 1.7e-60 235.7 115 90.4
SEGI_37796 Sequoiadendron giganteum HOM05D004365 ORTHO05D005123 1.7e-60 235.7 115 90.4
Duzib212G0477 Durio zibethinus HOM05D004365 ORTHO05D005123 3.0e-60 235.0 115 89.6
THA.LOC104820300 Tarenaya hassleriana HOM05D004365 ORTHO05D005123 3.0e-60 235.0 115 88.7
AL3G29960 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 6.6e-60 233.8 115 88.7
Aa31LG8G4020 Aethionema arabicum HOM05D004365 ORTHO05D005123 8.6e-60 233.4 115 87.8
BcaC09g50324 Brassica carinata HOM05D004365 ORTHO05D005123 8.6e-60 233.4 115 87.8
BcaNung00211 Brassica carinata HOM05D004365 ORTHO05D005123 8.6e-60 233.4 115 87.8
A01p21300 Brassica napus HOM05D004365 ORTHO05D005123 8.6e-60 233.4 115 87.8
Carub.0003s1673 Capsella rubella HOM05D004365 ORTHO05D005123 1.1e-59 233.0 115 88.7
Thhalv10021989m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 1.1e-59 233.0 115 87.8
Dinv44302 Davidia involucrata HOM05D004365 ORTHO05D005123 1.5e-59 232.6 115 90.4
AT3G16980 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 2.5e-59 231.9 115 87.8
Nitab4.5_0006365g0010 Nicotiana tabacum HOM05D004365 ORTHO05D005123 3.3e-59 231.5 134 80.6
SMO364G0316 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 3.3e-59 231.5 115 87.0
AL7G38770 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 4.3e-59 231.1 115 87.0
AT4G16265 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 4.3e-59 231.1 115 87.0
Carub.0007s2525 Capsella rubella HOM05D004365 ORTHO05D005123 4.3e-59 231.1 115 87.0
Cpa.g.sc9.86 Carica papaya HOM05D004365 ORTHO05D005123 4.3e-59 231.1 115 87.0
Mapoly0028s0097 Marchantia polymorpha HOM05D004365 ORTHO05D005123 5.6e-59 230.7 115 87.8
BcaB08g34342 Brassica carinata HOM05D004365 ORTHO05D005123 7.3e-59 230.3 115 86.1
BcaC07g37975 Brassica carinata HOM05D004365 ORTHO05D005123 7.3e-59 230.3 115 86.1
A08p12300 Brassica napus HOM05D004365 ORTHO05D005123 7.3e-59 230.3 115 86.1
BolC8t48354H Brassica oleracea HOM05D004365 ORTHO05D005123 7.3e-59 230.3 115 86.1
Potri.008G106900 Populus trichocarpa HOM05D004365 ORTHO05D005123 9.6e-59 229.9 115 87.0
Thhalv10026603m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 1.6e-58 229.2 115 86.1
Sabra08G0080800 Salix brachista HOM05D004365 ORTHO05D005123 3.6e-58 228.0 115 86.1
Pp3c18_17910 Physcomitrium patens HOM05D004365 ORTHO05D005123 4.7e-58 227.6 115 85.2
CARHR092230 Cardamine hirsuta HOM05D004365 ORTHO05D005123 8.1e-58 226.9 115 87.0
CARHR222650 Cardamine hirsuta HOM05D004365 ORTHO05D005123 8.1e-58 226.9 115 84.3
Sabra10G0110500 Salix brachista HOM05D004365 ORTHO05D005123 8.1e-58 226.9 115 86.1
TWI09G0163 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 1.4e-57 226.1 115 87.0
Migut.N00047 Erythranthe guttata HOM05D004365 ORTHO05D005123 8.9e-57 223.4 105 94.3
arahy.Tifrunner.gnm1.ann1.79Y4XM Arachis hypogaea HOM05D004365 ORTHO05D005123 2.0e-56 222.2 112 88.4
arahy.Tifrunner.gnm1.ann1.C4ZZV2 Arachis hypogaea HOM05D004365 ORTHO05D005123 2.0e-56 222.2 112 88.4
Zm00001eb088460 Zea mays HOM05D004365 ORTHO05D005123 2.0e-56 222.2 115 81.7
Hund11961 Selenicereus undatus HOM05D004365 ORTHO05D005123 2.2e-55 218.8 105 92.4
Os03g0102200 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 1.1e-54 216.5 115 80.9
Hund03115 Selenicereus undatus HOM05D004365 ORTHO05D005123 1.1e-54 216.5 105 90.5
EL10Ac3g05464 Beta vulgaris HOM05D004365 ORTHO05D005123 1.9e-54 215.7 115 84.3
SalBow2G2782 Salvia bowleyana HOM05D004365 ORTHO05D005123 2.1e-53 212.2 128 78.9
A09p28560 Brassica napus HOM05D004365 ORTHO05D005123 3.5e-53 211.5 113 80.5
BraA09t38417Z Brassica rapa HOM05D004365 ORTHO05D005123 3.5e-53 211.5 113 80.5
BolC1t02605H Brassica oleracea HOM05D004365 ORTHO05D005123 4.6e-53 211.1 105 86.7
Lalb_Chr08g0234431 Lupinus albus HOM05D004365 ORTHO05D005123 6.0e-53 210.7 112 83.9
Os12g0560400 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 6.0e-53 210.7 105 87.6
arahy.Tifrunner.gnm1.ann1.MX4EIU Arachis hypogaea HOM05D004365 ORTHO05D005123 7.8e-53 210.3 114 79.8
SpUn0413_0020 Schrenkiella parvula HOM05D004365 ORTHO05D005123 2.3e-52 208.8 105 85.7
BraA08t33228Z Brassica rapa HOM05D004365 ORTHO05D005123 3.9e-52 208.0 105 84.8
Manes.03G202800 Manihot esculenta HOM05D004365 ORTHO05D005123 1.5e-51 206.1 115 78.3
BcaC04g21057 Brassica carinata HOM05D004365 ORTHO05D005123 2.1e-50 202.2 112 76.8
Glyma.07G241200 Glycine max HOM05D004365 ORTHO05D005123 2.1e-50 202.2 115 73.9
C09p36150 Brassica napus HOM05D004365 ORTHO05D005123 2.8e-50 201.8 112 76.8
BolC9t56454H Brassica oleracea HOM05D004365 ORTHO05D005123 2.8e-50 201.8 112 76.8
Dinv15193 Davidia involucrata HOM05D004365 ORTHO05D005123 2.8e-50 201.8 98 94.9
Lj4g0028172 Lotus japonicus HOM05D004365 ORTHO05D005123 8.1e-50 200.3 115 75.7
HPP92_005120 Vanilla planifolia HOM05D004365 ORTHO05D005123 1.1e-49 199.9 114 73.7
Phvul.003G112600 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 4.0e-49 198.0 115 73.0
TWI53G1753 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 2.2e-47 192.2 114 71.1
VMungo1215G2752 Vigna mungo HOM05D004365 ORTHO05D005123 7.1e-46 187.2 115 69.6
TWI53G0542 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 1.2e-45 186.4 114 69.3
Mapoly0087s0071 Marchantia polymorpha HOM05D004365 ORTHO05D005123 6.0e-45 184.1 115 69.6
DCAR_027008 Daucus carota HOM05D004365 ORTHO05D005123 6.6e-44 180.6 180 53.9
VMungo1309G0143 Vigna mungo HOM05D004365 ORTHO05D005123 1.9e-43 179.1 88 92.0
AUR62041403 Chenopodium quinoa HOM05D004365 ORTHO05D005123 6.2e-42 174.1 93 84.9
Rhsim02G0004900 Rhododendron simsii HOM05D004365 ORTHO05D005123 6.2e-42 174.1 90 87.8
SGA_v2.0_scaffold119G32662 Striga asiatica HOM05D004365 ORTHO05D005123 6.2e-42 174.1 84 94.0
arahy.Tifrunner.gnm1.ann1.2XVX11 Arachis hypogaea HOM05D004365 ORTHO05D005123 1.4e-41 172.9 114 69.3
ATR0665G356 Amborella trichopoda HOM05D004365 ORTHO05D005123 3.1e-41 171.8 88 88.6
Os07g0615800 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 5.3e-41 171.0 115 60.0
AUR62016130 Chenopodium quinoa HOM05D004365 ORTHO05D005123 1.5e-40 169.5 80 93.8
Sabra10G0110300 Salix brachista HOM05D004365 ORTHO05D005123 2.0e-40 169.1 115 68.7
FAN12G3053 Fragaria x ananassa HOM05D004365 ORTHO05D005123 3.4e-40 168.3 80 92.5
TPR.G10905 Trifolium pratense HOM05D004365 ORTHO05D005123 4.5e-40 167.9 88 86.4
FvH4_3g15650 Fragaria vesca HOM05D004365 ORTHO05D005123 2.2e-39 165.6 80 90.0
Potri.010G142500 Populus trichocarpa HOM05D004365 ORTHO05D005123 2.2e-39 165.6 94 80.9
FAN12G1077 Fragaria x ananassa HOM05D004365 ORTHO05D005123 8.4e-39 163.7 82 87.8
BraA01t02037Z Brassica rapa HOM05D004365 ORTHO05D005123 7.1e-38 160.6 81 84.0
Eucgr.H02672 Eucalyptus grandis HOM05D004365 ORTHO05D005123 9.3e-38 160.2 84 85.7
Atru.chr4.3028 Acer truncatum HOM05D004365 ORTHO05D005123 1.6e-37 159.5 79 86.1
BcaB04g18375 Brassica carinata HOM05D004365 ORTHO05D005123 1.0e-36 156.8 80 82.5
Sp7g14780 Schrenkiella parvula HOM05D004365 ORTHO05D005123 1.3e-36 156.4 80 82.5
Zm00001eb086380 Zea mays HOM05D004365 ORTHO05D005123 1.8e-36 156.0 80 83.8
Zm00001eb138580 Zea mays HOM05D004365 ORTHO05D005123 3.0e-36 155.2 81 81.5
COL.COLO4_34649 Corchorus olitorius HOM05D001765 ORTHO05D005123 1.5e-35 152.9 77 89.6
Zm00001eb230190 Zea mays HOM05D004365 ORTHO05D005123 4.3e-35 151.4 81 81.5
Haze_26633 Corylus avellana HOM05D004365 ORTHO05D005123 6.2e-34 147.5 110 59.1
MCO01G087 Micromonas commoda HOM05D004365 ORTHO05D005123 5.5e-30 134.4 111 52.3
Zm00001eb270680 Zea mays HOM05D004365 ORTHO05D005123 4.8e-26 121.3 64 84.4
AL7G38230 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 3.1e-25 118.6 61 82.0
Zm00001eb327460 Zea mays HOM05D004365 ORTHO05D005123 4.2e-22 108.2 97 49.5
AagrBONN_evm.TU.Sc2ySwM_117.3306 Anthoceros agrestis HOM05D004365 ORTHO05D005123 1.6e-21 106.3 114 45.6
Hma1.2p1_0096F.1_g047650 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 1.6e-21 106.3 56 83.9
SHI00177 Sapria himalayana HOM05D004365 ORTHO05D005123 6.1e-21 104.4 71 64.8
Cre12.g505750 Chlamydomonas reinhardtii HOM05D004365 ORTHO05D005123 1.0e-20 103.6 113 45.1
Zm00001eb137030 Zea mays HOM05D004365 ORTHO05D005123 3.9e-20 101.7 54 83.3
PRCOL_00000204 Prasinoderma coloniale HOM05D004365 ORTHO05D005123 1.9e-19 99.4 113 45.1
BcaB01g01499 Brassica carinata HOM05D004365 ORTHO05D005123 3.7e-18 95.1 49 81.6
Mapoly0020s0069 Marchantia polymorpha HOM05D004365 ORTHO05D005123 1.5e-16 89.7 117 38.5
Cfa024902 Carpinus fangiana HOM05D004365 ORTHO05D005123 2.6e-16 89.0 64 54.7
Hma1.2p1_0234F.1_g098400 Hydrangea macrophylla HOM05D001088 ORTHO05D005123 4.5e-16 88.2 70 62.9
SMO304G0059 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 2.7e-13 79.0 104 39.4
AagrBONN_evm.TU.Sc2ySwM_344.170 Anthoceros agrestis HOM05D001942 ORTHO05D001996 9.7e-11 70.5 105 35.2
Os11g0676650 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 1.7e-10 69.7 40 77.5
Pp3c15_5550 Physcomitrium patens HOM05D006029 ORTHO05D007439 4.1e-09 65.1 112 33.0
PGR102G2016 Punica granatum HOM05D006029 ORTHO05D007439 9.1e-09 63.9 112 28.6
AagrBONN_evm.TU.Sc2ySwM_117.3630 Anthoceros agrestis HOM05D006029 ORTHO05D007439 2.0e-08 62.8 112 33.9
EL10Ac5g10924 Beta vulgaris HOM05D006029 ORTHO05D007439 3.4e-08 62.0 113 26.5
Sc02g0002910 Simmondsia chinensis HOM05D006029 ORTHO05D007439 1.7e-07 59.7 113 29.2
Hund17067 Selenicereus undatus HOM05D006029 ORTHO05D007439 2.2e-07 59.3 115 28.7
Mapoly0122s0031 Marchantia polymorpha HOM05D004365 ORTHO05D253640 6.5e-07 57.8 88 35.2
Rhsim01G0175700 Rhododendron simsii HOM05D006029 ORTHO05D007439 2.5e-06 55.8 114 28.1
Ciclev10022957m.g Citrus clementina HOM05D006029 ORTHO05D007439 7.2e-06 54.3 116 28.4
Nn1g00349 Nelumbo nucifera HOM05D006029 ORTHO05D007439 9.4e-06 53.9 113 28.3


User provided reference genes

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