Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008153 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 3.7e-188 661.4 330 100.0
CSS0010787 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 3.1e-150 535.4 382 77.0
CSS0043330 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 8.6e-145 517.3 327 84.4
vmacro09128 Vaccinium macrocarpon HOM05D003161 ORTHO05D005173 2.2e-116 422.9 382 60.7
Rhsim04G0093500 Rhododendron simsii HOM05D003161 ORTHO05D005173 6.4e-116 421.4 382 61.3
Cfa020115 Carpinus fangiana HOM05D003161 ORTHO05D005173 1.9e-107 393.3 382 57.1
Thecc.05G180200 Theobroma cacao HOM05D003161 ORTHO05D005173 2.4e-107 392.9 375 58.1
Lj2C361G9 Lonicera japonica HOM05D003161 ORTHO05D005173 1.6e-106 390.2 380 58.7
Dinv25021 Davidia involucrata HOM05D003161 ORTHO05D005173 2.7e-106 389.4 382 57.1
Haze_20072 Corylus avellana HOM05D003161 ORTHO05D005173 1.3e-105 387.1 382 56.8
CSS0042321 Camellia sinensis var. sinensis HOM05D003161 ORTHO05D005173 3.9e-105 385.6 322 68.3
QL07p025530 Quercus lobata HOM05D003161 ORTHO05D005173 5.1e-105 385.2 382 56.3
GSVIVG01033430001 Vitis vinifera HOM05D003161 ORTHO05D005173 6.7e-105 384.8 368 56.8
Gorai.006G145100 Gossypium raimondii HOM05D003161 ORTHO05D005173 3.1e-102 375.9 382 55.0
MSTRG.26730 Avicennia marina HOM05D003161 ORTHO05D005173 4.0e-102 375.6 381 54.9
Ciclev10013867m.g Citrus clementina HOM05D003161 ORTHO05D005173 4.0e-102 375.6 380 56.6
Cc06_g23250 Coffea canephora HOM05D003161 ORTHO05D005173 6.9e-102 374.8 377 56.2
Gohir.A09G130300 Gossypium hirsutum HOM05D003161 ORTHO05D005173 6.9e-102 374.8 382 55.0
CiPaw.08G134900 Carya illinoinensis HOM05D003161 ORTHO05D005173 1.2e-101 374.0 379 55.7
Gohir.D09G126300 Gossypium hirsutum HOM05D003161 ORTHO05D005173 1.2e-101 374.0 378 55.0
Cpa.g.sc85.20 Carica papaya HOM05D003161 ORTHO05D005173 2.6e-101 372.9 380 55.5
Duzib128G1871 Durio zibethinus HOM05D003161 ORTHO05D005173 7.6e-101 371.3 378 56.1
Oeu046733.1 Olea europaea HOM05D003161 ORTHO05D005173 6.5e-100 368.2 344 57.3
PGSC0003DMG400008644 Solanum tuberosum HOM05D003161 ORTHO05D005173 1.2e-98 364.0 382 55.0
Nitab4.5_0001364g0070 Nicotiana tabacum HOM05D003161 ORTHO05D005173 2.1e-98 363.2 382 54.5
SGA_v2.0_scaffold274G46506 Striga asiatica HOM05D003161 ORTHO05D005173 3.5e-98 362.5 371 54.7
CAN.G479.45 Capsicum annuum HOM05D003161 ORTHO05D005173 1.0e-97 360.9 382 54.7
Sopen03g011350 Solanum pennellii HOM05D003161 ORTHO05D005173 1.3e-97 360.5 383 54.0
Nitab4.5_0000571g0110 Nicotiana tabacum HOM05D003161 ORTHO05D005173 3.9e-97 359.0 377 54.9
Solyc03g051900.4 Solanum lycopersicum HOM05D003161 ORTHO05D005173 1.5e-96 357.1 383 53.5
Eucgr.A02507 Eucalyptus grandis HOM05D003161 ORTHO05D005173 3.3e-96 355.9 380 53.2
TWI53G1521 Tripterygium wilfordii HOM05D003161 ORTHO05D005173 3.3e-96 355.9 380 53.7
TAR633G1132 Trochodendron aralioides HOM05D003161 ORTHO05D005173 3.3e-96 355.9 382 53.9
Peaxi162Scf00045g00223 Petunia axillaris HOM05D003161 ORTHO05D005173 7.4e-96 354.8 353 56.4
Manes.09G040300 Manihot esculenta HOM05D003161 ORTHO05D005173 2.1e-95 353.2 380 52.4
Prupe.7G085700 Prunus persica HOM05D003161 ORTHO05D005173 3.1e-94 349.4 382 53.7
PGR004G2129 Punica granatum HOM05D003161 ORTHO05D005173 3.1e-94 349.4 378 52.1
Sabra16G0064600 Salix brachista HOM05D003161 ORTHO05D005173 3.1e-94 349.4 382 51.3
Atru.chr8.1220 Acer truncatum HOM05D003161 ORTHO05D005173 4.0e-94 349.0 355 56.6
PSO384G1659 Papaver somniferum HOM05D003161 ORTHO05D005173 6.9e-94 348.2 384 52.3
Glyma.02G168900 Glycine max HOM05D003161 ORTHO05D005173 3.4e-93 345.9 377 51.5
BraA05t22538Z Brassica rapa HOM05D003161 ORTHO05D005173 1.0e-92 344.4 375 52.3
Potri.016G062600 Populus trichocarpa HOM05D003161 ORTHO05D005173 1.0e-92 344.4 382 51.3
CARHR086520 Cardamine hirsuta HOM05D003161 ORTHO05D005173 1.3e-92 344.0 381 51.7
Aqoxy2G02393 Aquilegia oxysepala HOM05D003161 ORTHO05D005173 1.7e-92 343.6 381 53.0
Glyma.09G104000 Glycine max HOM05D003161 ORTHO05D005173 1.7e-92 343.6 377 51.7
Lsat_1_v5_gn_2_58000 Lactuca sativa HOM05D003161 ORTHO05D005173 2.9e-92 342.8 373 54.2
Lalb_Chr21g0316111 Lupinus albus HOM05D003161 ORTHO05D005173 2.9e-92 342.8 368 51.6
AL3G23570 Arabidopsis lyrata HOM05D003161 ORTHO05D005173 6.5e-92 341.7 383 50.4
PSO339G0479 Papaver somniferum HOM05D003161 ORTHO05D005173 6.5e-92 341.7 384 51.8
Sed0016761 Sechium edule HOM05D003161 ORTHO05D005173 1.1e-91 340.9 384 52.3
BcaB04g21101 Brassica carinata HOM05D003161 ORTHO05D005173 1.9e-91 340.1 376 51.1
DCAR_016871 Daucus carota HOM05D003161 ORTHO05D005173 1.9e-91 340.1 382 54.5
VMungo0720G1738 Vigna mungo HOM05D003161 ORTHO05D005173 4.2e-91 339.0 377 49.9
BraA01t04149Z Brassica rapa HOM05D003161 ORTHO05D005173 5.5e-91 338.6 376 51.3
HanXRQChr14g0457761 Helianthus annuus HOM05D003161 ORTHO05D005173 9.3e-91 337.8 374 50.0
Carub.0003s1130 Capsella rubella HOM05D003161 ORTHO05D005173 1.2e-90 337.4 382 51.0
Aa31sc238G10 Aethionema arabicum HOM05D003161 ORTHO05D005173 2.1e-90 336.7 373 52.0
Ca_25942_v3 Cicer arietinum L. HOM05D003161 ORTHO05D005173 3.5e-90 335.9 369 52.8
ClCG04G001230 Citrullus lanatus HOM05D003161 ORTHO05D005173 4.6e-90 335.5 382 50.5
AT3G11964 Arabidopsis thaliana HOM05D003161 ORTHO05D005173 1.8e-89 333.6 377 51.5
C05p55950 Brassica napus HOM05D003161 ORTHO05D005173 1.8e-89 333.6 380 50.0
BolC5t34262H Brassica oleracea HOM05D003161 ORTHO05D005173 1.8e-89 333.6 380 50.0
Thhalv10019877m.g Eutrema salsugineum HOM05D003161 ORTHO05D005173 1.8e-89 333.6 383 49.6
BcaC05g29306 Brassica carinata HOM05D003161 ORTHO05D005173 3.9e-89 332.4 384 50.0
BcaC09g48184 Brassica carinata HOM05D003161 ORTHO05D005173 3.9e-89 332.4 376 50.5
BolC1t05277H Brassica oleracea HOM05D003161 ORTHO05D005173 3.9e-89 332.4 376 50.5
Sp3g10190 Schrenkiella parvula HOM05D003161 ORTHO05D005173 3.9e-89 332.4 380 50.0
Migut.K00013 Erythranthe guttata HOM05D003161 ORTHO05D005173 8.7e-89 331.3 383 51.4
A05p37390 Brassica napus HOM05D003161 ORTHO05D005173 2.5e-88 329.7 380 49.5
ECA238G1915 Erigeron canadensis HOM05D003161 ORTHO05D005173 4.3e-88 328.9 374 50.0
arahy.Tifrunner.gnm1.ann1.PL5CUR Arachis hypogaea HOM05D003161 ORTHO05D005173 9.7e-88 327.8 377 50.1
AUR62026957 Chenopodium quinoa HOM05D003161 ORTHO05D005173 2.2e-87 326.6 377 50.7
arahy.Tifrunner.gnm1.ann1.S31791 Arachis hypogaea HOM05D003161 ORTHO05D005173 8.2e-87 324.7 377 49.6
Sc19g0006250 Simmondsia chinensis HOM05D003161 ORTHO05D005173 1.1e-86 324.3 382 49.2
Phvul.007G270000 Phaseolus vulgaris HOM05D003161 ORTHO05D005173 2.4e-86 323.2 373 48.5
RcHm_v2.0_Chr3g0478661 Rosa chinensis HOM05D003161 ORTHO05D005173 9.0e-86 321.2 380 50.8
FAN02G0008 Fragaria x ananassa HOM05D003161 ORTHO05D005173 2.0e-85 320.1 384 50.8
FAN09G2861 Fragaria x ananassa HOM05D003161 ORTHO05D005173 3.4e-85 319.3 384 50.8
FAN05G2723 Fragaria x ananassa HOM05D003161 ORTHO05D005173 5.9e-85 318.5 384 50.5
FAN05G0820 Fragaria x ananassa HOM05D003161 ORTHO05D005173 7.7e-85 318.2 384 50.5
FvH4_6g21470 Fragaria vesca HOM05D003161 ORTHO05D005173 1.3e-84 317.4 384 50.8
FAN14G4107 Fragaria x ananassa HOM05D003161 ORTHO05D005173 2.2e-84 316.6 384 50.5
Lj5g0006535 Lotus japonicus HOM05D003161 ORTHO05D005173 6.5e-84 315.1 377 48.8
THA.LOC104826779 Tarenaya hassleriana HOM05D003161 ORTHO05D005173 1.1e-83 314.3 382 49.5
Hund19218 Selenicereus undatus HOM05D003161 ORTHO05D005173 2.5e-83 313.2 381 48.6
MD12G1051100 Malus domestica HOM05D003161 ORTHO05D005173 5.5e-83 312.0 384 49.2
Psat6g109960 Pisum sativum HOM05D003161 ORTHO05D005173 7.2e-83 311.6 377 49.6
Ah.15g091410 Amaranthus hybridus HOM05D003161 ORTHO05D005173 9.4e-83 311.2 375 48.5
Hund19220 Selenicereus undatus HOM05D003161 ORTHO05D005173 6.1e-82 308.5 383 47.8
CANSAT64G2741 Cannabis sativa HOM05D003161 ORTHO05D005173 1.4e-81 307.4 385 47.8
MELO3C008994.2 Cucumis melo HOM05D003161 ORTHO05D005173 6.7e-81 305.1 382 47.9
CsaV3_4G031200 Cucumis sativus L. HOM05D003161 ORTHO05D005173 6.7e-81 305.1 382 48.2
CAN.G1433.27 Capsicum annuum HOM05D003161 ORTHO05D005173 5.7e-80 302.0 353 50.1
Zm00001eb302830 Zea mays HOM05D003161 ORTHO05D005173 5.7e-80 302.0 364 50.0
Medtr1g054710 Medicago truncatula HOM05D003161 ORTHO05D005173 3.7e-79 299.3 382 47.6
Os07g0203300 Oryza sativa ssp. japonica HOM05D003161 ORTHO05D005173 3.7e-79 299.3 369 49.3
CiPaw.08G134600 Carya illinoinensis HOM05D003161 ORTHO05D005173 5.3e-78 295.4 363 48.5
EL10Ac7g16694 Beta vulgaris HOM05D003161 ORTHO05D005173 1.2e-77 294.3 377 48.0
ATR0737G016 Amborella trichopoda HOM05D003161 ORTHO05D005173 1.5e-77 293.9 389 46.8
CDE02G2929 Ceratophyllum demersum HOM05D003161 ORTHO05D005173 2.6e-77 293.1 385 44.7
TPR.G14502 Trifolium pratense HOM05D003161 ORTHO05D005173 3.4e-77 292.7 369 46.9
HPP92_027318 Vanilla planifolia HOM05D003161 ORTHO05D005173 5.5e-75 285.4 372 46.8
TWI74G1605 Tripterygium wilfordii HOM05D003161 ORTHO05D005173 2.7e-74 283.1 284 56.0
SalBow1G2678 Salvia bowleyana HOM05D003161 ORTHO05D005173 3.6e-74 282.7 348 49.4
SEGI_01045 Sequoiadendron giganteum HOM05D003161 ORTHO05D005173 1.4e-73 280.8 389 44.5
TWI74G0321 Tripterygium wilfordii HOM05D003161 ORTHO05D005173 9.7e-72 274.6 266 58.3
MD14G1049800 Malus domestica HOM05D003161 ORTHO05D005173 6.3e-71 271.9 323 50.2
AUR62041563 Chenopodium quinoa HOM05D003161 ORTHO05D005173 1.1e-70 271.2 375 44.8
Actinidia38605 Actinidia chinensis HOM05D003161 ORTHO05D005173 6.5e-68 261.9 260 56.9
PSO210G4351 Papaver somniferum HOM05D003161 ORTHO05D005173 1.1e-67 261.2 274 52.2
unitig_744.g24086 Utricularia gibba HOM05D003161 ORTHO05D005173 3.0e-65 253.1 318 46.9
SHI30029 Sapria himalayana HOM05D003161 ORTHO05D005173 9.1e-62 241.5 387 40.1
SMO137G0021 Selaginella moellendorffii HOM05D003161 ORTHO05D005173 1.2e-61 241.1 369 39.8
Mapoly0019s0051 Marchantia polymorpha HOM05D003161 ORTHO05D005173 6.5e-60 235.3 392 39.0
Pp3c4_30330 Physcomitrium patens HOM05D003161 ORTHO05D005173 5.0e-52 209.1 418 34.7
Actinidia05786 Actinidia chinensis HOM05D003161 ORTHO05D009570 9.4e-51 204.9 172 63.4
COL.COLO4_29434 Corchorus olitorius HOM05D003161 ORTHO05D005173 2.7e-50 203.4 397 37.0
Hund18983 Selenicereus undatus HOM05D003161 ORTHO05D005173 6.1e-50 202.2 239 48.1
Zm00001eb302870 Zea mays HOM05D003161 ORTHO05D005173 8.8e-49 198.4 193 56.0
CBR_g22381 Chara braunii HOM05D003161 ORTHO05D005173 1.2e-48 198.0 415 32.8
CAN.G317.8 Capsicum annuum HOM05D003161 ORTHO05D005173 1.4e-41 174.5 131 66.4
BcaB06g25562 Brassica carinata HOM05D003161 ORTHO05D005173 1.3e-39 167.9 130 63.8
Hund18979 Selenicereus undatus HOM05D003161 ORTHO05D005173 5.4e-38 162.5 280 38.9
Cre10.g428750 Chlamydomonas reinhardtii HOM05D003161 ORTHO05D005173 7.0e-38 162.2 195 44.1
Aqoxy4G00694 Aquilegia oxysepala HOM05D003161 ORTHO05D005173 9.5e-35 151.8 257 44.0
PRCOL_00005658 Prasinoderma coloniale HOM05D003161 ORTHO05D005173 3.1e-25 120.2 165 40.6
Lsat_1_v5_gn_9_24981 Lactuca sativa HOM05D009325 ORTHO05D005173 1.5e-24 117.9 77 76.6
Cfa023914 Carpinus fangiana HOM05D003161 ORTHO05D005173 9.8e-24 115.2 393 25.2
Lsat_1_v5_gn_5_134001 Lactuca sativa HOM05D003161 ORTHO05D005173 4.1e-22 109.8 77 68.8
AagrBONN_evm.TU.Sc2ySwM_340.243 Anthoceros agrestis HOM05D003161 ORTHO05D005173 1.8e-17 94.4 278 31.7
CAN.G317.9 Capsicum annuum HOM05D003161 ORTHO05D005173 3.1e-17 93.6 105 50.5
Lsat_1_v5_gn_7_25100 Lactuca sativa HOM05D003161 ORTHO05D005173 1.9e-11 74.3 39 89.7
Medtr3g069250 Medicago truncatula HOM05D003161 ORTHO05D013615 1.2e-10 71.6 70 50.0
Lsat_1_v5_gn_8_97781 Lactuca sativa HOM05D003161 ORTHO05D005173 3.6e-10 70.1 67 53.7
HPP92_015876 Vanilla planifolia HOM05D003161 ORTHO05D005173 2.6e-08 63.9 67 44.8
SMO111G0226 Selaginella moellendorffii HOM05D003161 ORTHO05D013615 4.4e-08 63.2 172 30.8
Actinidia30948 Actinidia chinensis HOM05D003161 ORTHO05D005173 2.4e-06 57.4 84 41.7
HanXRQChr13g0419181 Helianthus annuus HOM05D003161 ORTHO05D009435 4.2e-06 56.6 39 61.5


User provided reference genes

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