Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0008092 Camellia sinensis var. sinensis HOM05D004526 ORTHO05D005548 4.5e-183 644.4 319 100.0
CSS0012548 Camellia sinensis var. sinensis HOM05D004526 ORTHO05D005548 7.2e-173 610.5 325 94.8
CSS0019571 Camellia sinensis var. sinensis HOM05D004526 ORTHO05D005548 1.1e-131 473.8 407 66.3
Dinv06512 Davidia involucrata HOM05D004526 ORTHO05D005548 7.8e-127 457.6 414 62.8
Dinv07025 Davidia involucrata HOM05D004526 ORTHO05D005548 2.6e-122 442.6 407 62.4
Nn3g17130 Nelumbo nucifera HOM05D004526 ORTHO05D005548 8.7e-118 427.6 408 59.3
Cfa007509 Carpinus fangiana HOM05D004526 ORTHO05D005548 1.9e-117 426.4 408 60.0
Actinidia06070 Actinidia chinensis HOM05D004526 ORTHO05D005548 7.3e-117 424.5 396 61.1
Nitab4.5_0000157g0090 Nicotiana tabacum HOM05D004526 ORTHO05D005548 2.8e-116 422.5 407 57.5
CiPaw.03G030200 Carya illinoinensis HOM05D004526 ORTHO05D005548 1.1e-115 420.6 408 59.1
PGSC0003DMG400030284 Solanum tuberosum HOM05D004526 ORTHO05D005548 1.8e-115 419.9 407 57.5
Peaxi162Scf00345g00811 Petunia axillaris HOM05D004526 ORTHO05D005548 2.4e-115 419.5 407 57.7
Cc08_g10980 Coffea canephora HOM05D004526 ORTHO05D005548 3.1e-115 419.1 403 58.6
TAR481G0009 Trochodendron aralioides HOM05D004526 ORTHO05D005548 1.2e-114 417.2 408 58.8
CiPaw.04G020200 Carya illinoinensis HOM05D004526 ORTHO05D005548 1.5e-114 416.8 408 58.3
Sopen01g004780 Solanum pennellii HOM05D004526 ORTHO05D005548 1.5e-114 416.8 407 57.0
Solyc01g009290.4 Solanum lycopersicum HOM05D004526 ORTHO05D005548 2.6e-114 416.0 407 56.8
GSVIVG01032607001 Vitis vinifera HOM05D004526 ORTHO05D005548 3.4e-114 415.6 408 58.3
CAN.G226.26 Capsicum annuum HOM05D004526 ORTHO05D005548 4.4e-114 415.2 407 56.8
Haze_14584 Corylus avellana HOM05D004526 ORTHO05D005548 5.8e-114 414.8 434 56.9
Lj7A401T78 Lonicera japonica HOM05D004526 ORTHO05D005548 2.2e-113 412.9 407 58.5
Potri.017G077200 Populus trichocarpa HOM05D004526 ORTHO05D005548 2.2e-113 412.9 404 57.4
Glyma.10G292700 Glycine max HOM05D004526 ORTHO05D005548 4.9e-113 411.8 408 57.6
Gohir.D04G050600 Gossypium hirsutum HOM05D004526 ORTHO05D005548 6.4e-113 411.4 408 58.1
Gorai.012G056100 Gossypium raimondii HOM05D004526 ORTHO05D005548 6.4e-113 411.4 408 58.1
Glyma.20G242900 Glycine max HOM05D004526 ORTHO05D005548 8.4e-113 411.0 408 57.1
Manes.17G021000 Manihot esculenta HOM05D004526 ORTHO05D005548 1.4e-112 410.2 408 57.1
Prupe.3G272100 Prunus persica HOM05D004526 ORTHO05D005548 1.9e-112 409.8 410 57.6
Thecc.04G074400 Theobroma cacao HOM05D004526 ORTHO05D005548 3.2e-112 409.1 408 57.8
MSTRG.1703 Avicennia marina HOM05D004526 ORTHO05D005548 7.1e-112 407.9 405 56.8
Gohir.A05G364100 Gossypium hirsutum HOM05D004526 ORTHO05D005548 7.1e-112 407.9 408 57.8
Ca_11340_v3 Cicer arietinum L. HOM05D004526 ORTHO05D005548 9.3e-112 407.5 408 57.1
CsaV3_5G037880 Cucumis sativus L. HOM05D004526 ORTHO05D005548 1.6e-111 406.8 408 57.1
DCAR_021672 Daucus carota HOM05D004526 ORTHO05D005548 1.6e-111 406.8 414 54.3
ClCG09G018400 Citrullus lanatus HOM05D004526 ORTHO05D005548 2.1e-111 406.4 409 56.7
QL02p080561 Quercus lobata HOM05D004526 ORTHO05D005548 3.5e-111 405.6 408 57.4
Sed0004091 Sechium edule HOM05D004526 ORTHO05D005548 7.9e-111 404.4 408 56.9
Duzib147G0459 Durio zibethinus HOM05D004526 ORTHO05D005548 1.0e-110 404.1 408 57.1
Hund13244 Selenicereus undatus HOM05D004526 ORTHO05D005548 1.3e-110 403.7 409 57.0
Oeu018626.2 Olea europaea HOM05D004526 ORTHO05D005548 3.0e-110 402.5 443 53.3
Phvul.007G007300 Phaseolus vulgaris HOM05D004526 ORTHO05D005548 3.9e-110 402.1 408 55.4
Migut.E01591 Erythranthe guttata HOM05D004526 ORTHO05D005548 5.1e-110 401.7 405 55.6
RcHm_v2.0_Chr2g0169161 Rosa chinensis HOM05D004526 ORTHO05D005548 8.7e-110 401.0 410 54.4
PSO478G0915 Papaver somniferum HOM05D004526 ORTHO05D005548 1.1e-109 400.6 408 54.7
COL.COLO4_25181 Corchorus olitorius HOM05D004526 ORTHO05D005548 1.5e-109 400.2 408 56.9
EL10Ac2g02933 Beta vulgaris HOM05D004526 ORTHO05D005548 1.9e-109 399.8 409 56.0
PGR142G4111 Punica granatum HOM05D004526 ORTHO05D005548 2.5e-109 399.4 408 55.9
RhsimUnG0055200 Rhododendron simsii HOM05D004526 ORTHO05D005548 4.3e-109 398.7 407 56.3
PSO017G3834 Papaver somniferum HOM05D004526 ORTHO05D005548 5.6e-109 398.3 408 54.4
PSO591G0197 Papaver somniferum HOM05D004526 ORTHO05D005548 7.3e-109 397.9 408 54.9
PSO832G1140 Papaver somniferum HOM05D004526 ORTHO05D005548 7.3e-109 397.9 408 54.9
Psat6g239400 Pisum sativum HOM05D004526 ORTHO05D005548 9.6e-109 397.5 408 55.1
TWI60G0005 Tripterygium wilfordii HOM05D004526 ORTHO05D005548 2.8e-108 396.0 408 54.9
Ciclev10011737m.g Citrus clementina HOM05D004526 ORTHO05D005548 6.2e-108 394.8 408 56.1
arahy.Tifrunner.gnm1.ann1.S1RF4U Arachis hypogaea HOM05D004526 ORTHO05D005548 1.1e-107 394.0 408 56.1
Lalb_Chr21g0307111 Lupinus albus HOM05D004526 ORTHO05D005548 5.3e-107 391.7 408 54.4
Aqoxy3G03268 Aquilegia oxysepala HOM05D004526 ORTHO05D005548 6.9e-107 391.3 408 55.9
arahy.Tifrunner.gnm1.ann1.31SG4H Arachis hypogaea HOM05D004526 ORTHO05D005548 9.0e-107 391.0 408 55.9
arahy.Tifrunner.gnm1.ann1.PC3EEW Arachis hypogaea HOM05D004526 ORTHO05D005548 9.0e-107 391.0 408 55.9
PGR142G2860 Punica granatum HOM05D004526 ORTHO05D005548 9.0e-107 391.0 408 55.4
Sc11g0006930 Simmondsia chinensis HOM05D004526 ORTHO05D005548 1.5e-106 390.2 411 55.2
Eucgr.I01917 Eucalyptus grandis HOM05D004526 ORTHO05D005548 2.0e-106 389.8 408 54.2
Lsat_1_v5_gn_4_176840 Lactuca sativa HOM05D004526 ORTHO05D005548 2.6e-106 389.4 407 54.5
Atru.chr8.1914 Acer truncatum HOM05D004526 ORTHO05D005548 3.4e-106 389.0 410 53.9
TAR622G0275 Trochodendron aralioides HOM05D004526 ORTHO05D005548 1.3e-105 387.1 326 66.6
SalBow1G4721 Salvia bowleyana HOM05D004526 ORTHO05D005548 2.2e-105 386.3 405 55.1
FAN02G4162 Fragaria x ananassa HOM05D004526 ORTHO05D005548 2.9e-105 386.0 410 53.2
MD17G1047000 Malus domestica HOM05D004526 ORTHO05D005548 2.9e-105 386.0 414 53.9
FvH4_6g49260 Fragaria vesca HOM05D004526 ORTHO05D005548 4.9e-105 385.2 410 53.2
VMungo0720G0008 Vigna mungo HOM05D004526 ORTHO05D005548 4.9e-105 385.2 397 55.4
Medtr1g116060 Medicago truncatula HOM05D004526 ORTHO05D005548 8.4e-105 384.4 404 54.0
HanXRQChr09g0265571 Helianthus annuus HOM05D004526 ORTHO05D005548 1.9e-104 383.3 407 53.8
Nn4g23045 Nelumbo nucifera HOM05D004526 ORTHO05D005548 1.2e-103 380.6 408 55.6
unitig_578.g15969 Utricularia gibba HOM05D004526 ORTHO05D005548 7.9e-103 377.9 405 52.8
FAN05G4948 Fragaria x ananassa HOM05D004526 ORTHO05D005548 3.9e-102 375.6 428 50.9
MD09G1046200 Malus domestica HOM05D004526 ORTHO05D005548 6.7e-102 374.8 392 55.4
THA.LOC104811064 Tarenaya hassleriana HOM05D004526 ORTHO05D005548 1.9e-101 373.2 408 52.9
FAN09G4881 Fragaria x ananassa HOM05D004526 ORTHO05D005548 5.6e-101 371.7 444 49.3
Sabra17G0069000 Salix brachista HOM05D004526 ORTHO05D005548 2.8e-100 369.4 391 54.0
arahy.Tifrunner.gnm1.ann1.C6A6VI Arachis hypogaea HOM05D004526 ORTHO05D005548 6.2e-100 368.2 408 53.2
Aa31LG5G15080 Aethionema arabicum HOM05D004526 ORTHO05D005548 1.7e-97 360.1 404 51.2
HPP92_012836 Vanilla planifolia HOM05D004526 ORTHO05D005548 2.2e-97 359.8 393 53.4
CDE04G0248 Ceratophyllum demersum HOM05D004526 ORTHO05D005548 2.9e-97 359.4 420 51.9
ECA232G3358 Erigeron canadensis HOM05D004526 ORTHO05D005548 6.5e-97 358.2 397 50.6
ATR0051G026 Amborella trichopoda HOM05D004526 ORTHO05D005548 1.9e-96 356.7 412 51.2
MELO3C021974.2 Cucumis melo HOM05D004526 ORTHO05D005548 1.9e-96 356.7 326 61.0
Lj5g0010112 Lotus japonicus HOM05D004526 ORTHO05D004861 4.2e-96 355.5 392 53.3
BcaB04g19307 Brassica carinata HOM05D004526 ORTHO05D005548 7.9e-95 351.3 404 49.3
BraA03t12552Z Brassica rapa HOM05D004526 ORTHO05D005548 1.0e-94 350.9 404 49.0
Carub.0003s0384 Capsella rubella HOM05D004526 ORTHO05D005548 1.0e-94 350.9 406 49.8
AL3G14740 Arabidopsis lyrata HOM05D004526 ORTHO05D005548 1.3e-94 350.5 404 48.5
Sp3g03530 Schrenkiella parvula HOM05D004526 ORTHO05D005548 1.3e-94 350.5 404 49.3
Thhalv10020725m.g Eutrema salsugineum HOM05D004526 ORTHO05D005548 3.9e-94 349.0 406 49.0
Nitab4.5_0001504g0050 Nicotiana tabacum HOM05D004526 ORTHO05D005548 3.9e-94 349.0 582 39.7
A03p33780 Brassica napus HOM05D004526 ORTHO05D005548 5.1e-94 348.6 404 48.8
C03p41080 Brassica napus HOM05D004526 ORTHO05D005548 5.1e-94 348.6 404 48.8
BcaC01g04355 Brassica carinata HOM05D004526 ORTHO05D005548 6.7e-94 348.2 404 48.8
BolC3t16397H Brassica oleracea HOM05D004526 ORTHO05D005548 6.7e-94 348.2 404 48.8
FAN14G2223 Fragaria x ananassa HOM05D004526 ORTHO05D005548 6.7e-94 348.2 444 47.3
MD09G1046500 Malus domestica HOM05D004526 ORTHO05D005548 1.1e-93 347.4 397 51.9
AT3G04680 Arabidopsis thaliana HOM05D004526 ORTHO05D005548 3.3e-93 345.9 404 48.0
HanXRQChr12g0357441 Helianthus annuus HOM05D004526 ORTHO05D005548 4.3e-93 345.5 407 50.9
Zm00001eb205260 Zea mays HOM05D004526 ORTHO05D005548 7.4e-93 344.7 410 46.8
CARHR078910 Cardamine hirsuta HOM05D004526 ORTHO05D005548 1.8e-91 340.1 403 47.9
CSS0037061 Camellia sinensis var. sinensis HOM05D004526 ORTHO05D005548 4.5e-90 335.5 360 56.7
SEGI_10762 Sequoiadendron giganteum HOM05D004526 ORTHO05D005548 5.8e-90 335.1 406 46.8
Cfa007708 Carpinus fangiana HOM05D004526 ORTHO05D005548 8.4e-89 331.3 375 53.9
Os02g0217500 Oryza sativa ssp. japonica HOM05D004526 ORTHO05D005548 1.5e-85 320.5 410 43.9
Sp1g35350 Schrenkiella parvula HOM05D004526 ORTHO05D005548 1.5e-85 320.5 401 45.6
Mapoly0016s0080 Marchantia polymorpha HOM05D004526 ORTHO05D005548 1.4e-83 313.9 418 43.3
SMO165G0052 Selaginella moellendorffii HOM05D004526 ORTHO05D005548 1.9e-80 303.5 414 42.5
AagrBONN_evm.TU.Sc2ySwM_344.3939 Anthoceros agrestis HOM05D004526 ORTHO05D005548 1.6e-79 300.4 420 42.6
HPP92_009728 Vanilla planifolia HOM05D004526 ORTHO05D005548 4.6e-79 298.9 390 43.3
AUR62031643 Chenopodium quinoa HOM05D004526 ORTHO05D005548 4.3e-77 292.4 291 57.4
AUR62038875 Chenopodium quinoa HOM05D004526 ORTHO05D005548 1.8e-75 287.0 288 57.6
TPR.G10385 Trifolium pratense HOM05D004526 ORTHO05D005548 1.3e-73 280.8 229 65.5
CBR_g42172 Chara braunii HOM05D004526 ORTHO05D005548 2.8e-68 263.1 430 38.4
vmacro05738 Vaccinium macrocarpon HOM05D004526 ORTHO05D005548 1.1e-64 251.1 242 58.7
TAR305G0002 Trochodendron aralioides HOM05D004526 ORTHO05D005548 1.9e-64 250.4 258 55.4
Pp3c21_6910 Physcomitrium patens HOM05D004526 ORTHO05D005548 1.5e-61 240.7 346 43.4
A04p15620 Brassica napus HOM05D004526 ORTHO05D005548 1.1e-59 234.6 401 37.2
AT5G39930 Arabidopsis thaliana HOM05D004526 ORTHO05D005548 7.0e-59 231.9 406 36.7
C04p49900 Brassica napus HOM05D004526 ORTHO05D005548 9.1e-59 231.5 394 37.8
BcaC02g08842 Brassica carinata HOM05D004526 ORTHO05D005548 1.2e-58 231.1 394 38.1
BolC4t26581H Brassica oleracea HOM05D004526 ORTHO05D005548 2.0e-58 230.3 388 38.4
BraA04t17197Z Brassica rapa HOM05D004526 ORTHO05D005548 1.5e-56 224.2 417 35.7
AL7G50210 Arabidopsis lyrata HOM05D004526 ORTHO05D005548 9.4e-56 221.5 400 36.8
BcaB06g27742 Brassica carinata HOM05D004526 ORTHO05D005548 2.7e-55 219.9 396 36.9
C06p02960 Brassica napus HOM05D004526 ORTHO05D005548 8.8e-54 214.9 362 40.3
BolC6t35419H Brassica oleracea HOM05D004526 ORTHO05D005548 8.8e-54 214.9 362 40.3
PRCOL_00003252 Prasinoderma coloniale HOM05D004526 ORTHO05D005548 1.8e-51 207.2 405 34.1
SHI08813 Sapria himalayana HOM05D004526 ORTHO05D005548 1.8e-51 207.2 310 43.2
Thhalv10028283m.g Eutrema salsugineum HOM05D004526 ORTHO05D005548 5.9e-50 202.2 369 34.4
AUR62010753 Chenopodium quinoa HOM05D004526 ORTHO05D005548 1.7e-49 200.7 205 56.6
BcaC08g43036 Brassica carinata HOM05D004526 ORTHO05D005548 2.1e-47 193.7 356 37.4
MCO09G184 Micromonas commoda HOM05D004526 ORTHO05D005548 3.6e-47 193.0 419 32.0
arahy.Tifrunner.gnm1.ann1.QUI3Q9 Arachis hypogaea HOM05D004526 ORTHO05D005548 2.8e-44 183.3 237 47.3
CARHR262250 Cardamine hirsuta HOM05D004526 ORTHO05D005548 1.4e-38 164.5 394 31.0
Sp7g01800 Schrenkiella parvula HOM05D004526 ORTHO05D005548 2.0e-37 160.6 418 30.9
Cre03.g194800 Chlamydomonas reinhardtii HOM05D004526 ORTHO05D005548 7.5e-37 158.7 396 30.1
Carub.0007s3580 Capsella rubella HOM05D004526 ORTHO05D005548 1.1e-35 154.8 349 31.8
Cpa.g.sc14.41 Carica papaya HOM05D004526 ORTHO05D005548 1.8e-35 154.1 94 79.8
arahy.Tifrunner.gnm1.ann1.9G88ZW Arachis hypogaea HOM05D004526 ORTHO05D005548 3.3e-32 143.3 194 49.0
arahy.Tifrunner.gnm1.ann1.HJC8LN Arachis hypogaea HOM05D004526 ORTHO05D005548 6.4e-28 129.0 183 44.8
BcaB07g33761 Brassica carinata HOM05D004526 ORTHO05D005548 1.7e-25 120.9 294 29.3
Actinidia27487 Actinidia chinensis HOM05D004526 ORTHO05D005548 1.2e-23 114.8 110 60.0
arahy.Tifrunner.gnm1.ann1.TUDV7U Arachis hypogaea HOM05D004526 ORTHO05D005548 1.1e-19 101.7 97 55.7
SpUn0485_0020 Schrenkiella parvula HOM05D004526 ORTHO05D005548 1.3e-17 94.7 231 30.7
CAN.G742.26 Capsicum annuum HOM05D004526 ORTHO05D005548 1.5e-16 91.3 91 52.7
MD09G1046100 Malus domestica HOM05D004526 ORTHO05D005548 4.4e-13 79.7 67 62.7
Sp7g07820 Schrenkiella parvula HOM05D004526 ORTHO05D005548 2.9e-12 77.0 118 35.6
Sp5g20800 Schrenkiella parvula HOM05D004526 ORTHO05D005548 3.9e-09 66.6 107 36.4
SHI08814 Sapria himalayana HOM05D004526 ORTHO05D005548 2.5e-08 63.9 39 69.2
TPR.G73 Trifolium pratense HOM05D004526 ORTHO05D005548 5.6e-08 62.8 38 76.3
Actinidia23573 Actinidia chinensis HOM05D004526 ORTHO05D005548 5.2e-06 56.2 33 78.8


User provided reference genes

Program Settings