Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006520 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 5.8e-115 417.5 207 100.0
CSS0048863 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 9.9e-107 390.2 209 95.2
CSS0027553 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 1.2e-27 127.5 62 90.3
CSS0027843 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 1.2e-27 127.5 62 90.3
Actinidia03796 Actinidia chinensis HOM05D007201 ORTHO05D009122 3.7e-21 105.9 69 71.0
Rhsim03G0269700 Rhododendron simsii HOM05D007201 ORTHO05D009122 8.3e-21 104.8 69 71.0
vmacro22702 Vaccinium macrocarpon HOM05D007201 ORTHO05D009122 3.2e-20 102.8 72 65.3
GSVIVG01034266001 Vitis vinifera HOM05D007201 ORTHO05D009122 1.3e-18 97.4 64 68.8
Lju50A20G7 Lonicera japonica HOM05D007201 ORTHO05D009122 1.7e-18 97.1 60 70.0
TAR626G0209 Trochodendron aralioides HOM05D007201 ORTHO05D009122 2.3e-18 96.7 60 70.0
Ciclev10008517m.g Citrus clementina HOM05D007201 ORTHO05D009122 3.9e-18 95.9 61 68.9
Manes.02G222200 Manihot esculenta HOM05D007201 ORTHO05D009122 5.1e-18 95.5 67 65.7
Cc06_g23490 Coffea canephora HOM05D007201 ORTHO05D009122 1.1e-17 94.4 67 67.2
CSS0037159 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 1.9e-17 93.6 62 71.0
CAN.G1591.3 Capsicum annuum HOM05D007201 ORTHO05D009122 1.9e-17 93.6 62 66.1
arahy.Tifrunner.gnm1.ann1.X4HTYC Arachis hypogaea HOM05D007201 ORTHO05D009122 4.3e-17 92.4 62 67.7
Sabra06G0061200 Salix brachista HOM05D007201 ORTHO05D009122 4.3e-17 92.4 59 69.5
MELO3C010035.2 Cucumis melo HOM05D007201 ORTHO05D009122 7.3e-17 91.7 65 64.6
Nn8g41282 Nelumbo nucifera HOM05D007201 ORTHO05D009122 9.5e-17 91.3 60 68.3
CsaV3_1G044360 Cucumis sativus L. HOM05D007201 ORTHO05D009122 1.6e-16 90.5 63 65.1
arahy.Tifrunner.gnm1.ann1.G7GJBK Arachis hypogaea HOM05D007201 ORTHO05D009122 3.6e-16 89.4 62 66.1
Atru.chr7.298 Acer truncatum HOM05D007201 ORTHO05D009122 6.2e-16 88.6 60 63.3
EL10Ac2g03602 Beta vulgaris HOM05D007201 ORTHO05D009122 6.2e-16 88.6 56 67.9
Haze_21242 Corylus avellana HOM05D007201 ORTHO05D009122 8.1e-16 88.2 58 63.8
Eucgr.C00055 Eucalyptus grandis HOM05D007201 ORTHO05D009122 8.1e-16 88.2 63 61.9
FvH4_4g00131 Fragaria vesca HOM05D007201 ORTHO05D009122 8.1e-16 88.2 67 58.2
FAN12G0236 Fragaria x ananassa HOM05D007201 ORTHO05D009122 8.1e-16 88.2 67 58.2
FAN12G1512 Fragaria x ananassa HOM05D007201 ORTHO05D009122 8.1e-16 88.2 67 58.2
Potri.006G081100 Populus trichocarpa HOM05D007201 ORTHO05D009122 8.1e-16 88.2 59 66.1
Sc10g0006090 Simmondsia chinensis HOM05D007201 ORTHO05D009122 1.1e-15 87.8 61 63.9
Solyc12g009390.2 Solanum lycopersicum HOM05D007201 ORTHO05D009122 1.4e-15 87.4 62 62.9
Sopen12g004380 Solanum pennellii HOM05D007201 ORTHO05D009122 1.4e-15 87.4 62 62.9
PGSC0003DMG400002893 Solanum tuberosum HOM05D007201 ORTHO05D009122 1.4e-15 87.4 62 62.9
Thecc.09G202300 Theobroma cacao HOM05D007201 ORTHO05D009122 1.4e-15 87.4 56 64.3
SHI24431 Sapria himalayana HOM05D007201 ORTHO05D009122 3.1e-15 86.3 63 60.3
RcHm_v2.0_Chr4g0384751 Rosa chinensis HOM05D007201 ORTHO05D009122 4.0e-15 85.9 67 58.2
Gohir.D04G008200 Gossypium hirsutum HOM05D007201 ORTHO05D009122 5.2e-15 85.5 57 63.2
Gorai.012G009900 Gossypium raimondii HOM05D007201 ORTHO05D009122 5.2e-15 85.5 57 63.2
PGR142G4385 Punica granatum HOM05D007201 ORTHO05D009122 5.2e-15 85.5 56 58.9
AUR62027959 Chenopodium quinoa HOM05D007201 ORTHO05D009122 6.8e-15 85.1 56 64.3
Peaxi162Scf00047g02450 Petunia axillaris HOM05D007201 ORTHO05D009122 8.9e-15 84.7 62 61.3
HPP92_017373 Vanilla planifolia HOM05D007201 ORTHO05D009122 8.9e-15 84.7 59 66.1
CiPaw.15G000100 Carya illinoinensis HOM05D007201 ORTHO05D009122 2.0e-14 83.6 62 59.7
Nitab4.5_0004827g0030 Nicotiana tabacum HOM05D007201 ORTHO05D009122 2.0e-14 83.6 62 58.1
Hund22525 Selenicereus undatus HOM05D007201 ORTHO05D009122 2.0e-14 83.6 64 57.8
SGA_v2.0_scaffold21G09583 Striga asiatica HOM05D007201 ORTHO05D009122 2.6e-14 83.2 63 61.9
TPR.G28027 Trifolium pratense HOM05D007201 ORTHO05D009122 2.6e-14 83.2 61 59.0
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 3.4e-14 82.8 63 58.7
Lalb_Chr19g0140031 Lupinus albus HOM05D007201 ORTHO05D009122 4.4e-14 82.4 60 60.0
Nitab4.5_0000073g0490 Nicotiana tabacum HOM05D007201 ORTHO05D009122 5.8e-14 82.0 62 58.1
COL.COLO4_09000 Corchorus olitorius HOM05D007201 ORTHO05D009122 7.6e-14 81.6 57 59.6
Lj3g0009807 Lotus japonicus HOM05D007201 ORTHO05D009122 7.6e-14 81.6 60 58.3
MD04G1000600 Malus domestica HOM05D007201 ORTHO05D009122 7.6e-14 81.6 61 59.0
Prupe.1G000600 Prunus persica HOM05D007201 ORTHO05D009122 7.6e-14 81.6 63 55.6
CDE04G0352 Ceratophyllum demersum HOM05D007201 ORTHO05D009122 9.9e-14 81.3 61 57.4
HanXRQChr10g0309261 Helianthus annuus HOM05D007201 ORTHO05D009122 2.2e-13 80.1 66 56.1
QL11p005700 Quercus lobata HOM05D007201 ORTHO05D009122 2.2e-13 80.1 59 55.9
Cpa.g.sc46.114 Carica papaya HOM05D007201 ORTHO05D009122 2.9e-13 79.7 64 57.8
Aqoxy37s001 Aquilegia oxysepala HOM05D007201 ORTHO05D009122 3.8e-13 79.3 62 58.1
Aqoxy7G02518 Aquilegia oxysepala HOM05D007201 ORTHO05D009122 3.8e-13 79.3 62 58.1
PSO339G5324 Papaver somniferum HOM05D007201 ORTHO05D009122 3.8e-13 79.3 63 54.0
CANSAT25G2467 Cannabis sativa HOM05D007201 ORTHO05D009122 4.9e-13 79.0 57 56.1
Cfa012872 Carpinus fangiana HOM05D007201 ORTHO05D009122 6.4e-13 78.6 58 56.9
VMungo1127G0228 Vigna mungo HOM05D007201 ORTHO05D009122 1.4e-12 77.4 56 57.1
Zm00001eb227240 Zea mays HOM05D007201 ORTHO05D009122 1.9e-12 77.0 56 58.9
Thhalv10018711m.g Eutrema salsugineum HOM05D007201 ORTHO05D009122 2.4e-12 76.6 62 53.2
Lsat_1_v5_gn_5_80700 Lactuca sativa HOM05D007201 ORTHO05D009122 2.4e-12 76.6 63 55.6
Psat7g169960 Pisum sativum HOM05D007201 ORTHO05D009122 2.4e-12 76.6 61 57.4
Medtr4g078160 Medicago truncatula HOM05D007201 ORTHO05D009122 3.2e-12 76.3 56 57.1
ECA240G0013 Erigeron canadensis HOM05D006383 ORTHO05D007815 7.1e-12 75.1 60 55.0
SEGI_05170 Sequoiadendron giganteum HOM05D007201 ORTHO05D009122 1.2e-11 74.3 50 66.0
Phvul.011G018600 Phaseolus vulgaris HOM05D007201 ORTHO05D009122 1.6e-11 73.9 56 53.6
C06p49330 Brassica napus HOM05D007201 ORTHO05D009122 6.0e-11 72.0 61 50.8
Aa31LG4G5550 Aethionema arabicum HOM05D007201 ORTHO05D009122 7.8e-11 71.6 59 52.5
AL2G35270 Arabidopsis lyrata HOM05D007201 ORTHO05D009122 1.0e-10 71.2 65 47.7
A07p40900 Brassica napus HOM05D007201 ORTHO05D009122 1.3e-10 70.9 58 51.7
BraA07t31630Z Brassica rapa HOM05D007201 ORTHO05D009122 1.3e-10 70.9 58 51.7
ECA234G1264 Erigeron canadensis HOM05D007201 ORTHO05D009122 1.7e-10 70.5 60 55.0
Carub.0002s2218 Capsella rubella HOM05D007201 ORTHO05D009122 3.0e-10 69.7 62 48.4
Sp5g30480 Schrenkiella parvula HOM05D007201 ORTHO05D009122 3.9e-10 69.3 59 50.8
CSS0040505 Camellia sinensis var. sinensis HOM05D004367 ORTHO05D004937 5.1e-10 68.9 109 48.6
Glyma.11G109000 Glycine max HOM05D007201 ORTHO05D009122 1.1e-09 67.8 57 50.9
Glyma.12G016400 Glycine max HOM05D007201 ORTHO05D009122 1.9e-09 67.0 58 51.7
THA.LOC104809224 Tarenaya hassleriana HOM05D007201 ORTHO05D009122 2.5e-09 66.6 56 51.8
Dinv26498 Davidia involucrata HOM05D007201 ORTHO05D009122 3.3e-09 66.2 46 67.4
Os06g0704300 Oryza sativa ssp. japonica HOM05D007201 ORTHO05D009122 3.3e-09 66.2 58 48.3
CARHR068690 Cardamine hirsuta HOM05D007201 ORTHO05D009122 5.6e-09 65.5 64 46.9
Dinv04310 Davidia involucrata HOM05D004367 ORTHO05D004937 5.6e-09 65.5 114 47.4
AT1G75340 Arabidopsis thaliana HOM05D007201 ORTHO05D009122 1.2e-08 64.3 50 52.0
BcaC08g47362 Brassica carinata HOM05D007201 ORTHO05D009122 3.6e-08 62.8 62 45.2
BolC6t39968H Brassica oleracea HOM05D007201 ORTHO05D009122 3.6e-08 62.8 62 45.2
FAN17G0247 Fragaria x ananassa HOM05D007201 ORTHO05D009122 9.0e-07 58.2 35 65.7
Rhsim06G0197900 Rhododendron simsii HOM05D004367 ORTHO05D004937 7.6e-06 55.1 115 39.1
PGSC0003DMG400025036 Solanum tuberosum HOM05D004367 ORTHO05D004937 7.6e-06 55.1 85 49.4


User provided reference genes

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