Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006431 Camellia sinensis var. sinensis HOM05D004820 ORTHO05D005946 3.5e-196 688.3 407 100.0
Oeu041704.1 Olea europaea HOM05D004820 ORTHO05D005946 3.7e-166 588.6 391 90.0
SGA_v2.0_scaffold81G26015 Striga asiatica HOM05D004820 ORTHO05D005946 1.7e-163 579.7 396 79.0
Cc03_g10020 Coffea canephora HOM05D004820 ORTHO05D005946 1.1e-162 577.0 391 83.4
Actinidia00769 Actinidia chinensis HOM05D004820 ORTHO05D005946 2.5e-162 575.9 399 88.7
Solyc09g065280.4 Solanum lycopersicum HOM05D004820 ORTHO05D005946 2.8e-161 572.4 396 77.3
CAN.G590.6 Capsicum annuum HOM05D004820 ORTHO05D005946 6.2e-161 571.2 396 75.5
Migut.N02046 Erythranthe guttata HOM05D004820 ORTHO05D005946 6.2e-161 571.2 399 75.7
Sopen09g027030 Solanum pennellii HOM05D004820 ORTHO05D005946 6.8e-160 567.8 396 81.6
PGSC0003DMG400019362 Solanum tuberosum HOM05D004820 ORTHO05D005946 1.7e-158 563.1 396 79.8
MSTRG.17449 Avicennia marina HOM05D004820 ORTHO05D005946 2.7e-156 555.8 392 86.2
Nn4g26288 Nelumbo nucifera HOM05D004820 ORTHO05D005946 2.7e-156 555.8 401 79.8
Glyma.03G155000 Glycine max HOM05D004820 ORTHO05D005946 4.7e-153 545.0 397 78.3
Manes.01G206900 Manihot esculenta HOM05D004820 ORTHO05D005946 4.7e-153 545.0 397 82.6
Eucgr.K03365 Eucalyptus grandis HOM05D004820 ORTHO05D005946 1.1e-152 543.9 401 82.8
Glyma.19G157200 Glycine max HOM05D004820 ORTHO05D005946 1.8e-152 543.1 397 77.3
Lsat_1_v5_gn_5_187781 Lactuca sativa HOM05D004820 ORTHO05D005946 1.8e-152 543.1 399 78.4
Atru.chr5.1456 Acer truncatum HOM05D004820 ORTHO05D005946 5.2e-152 541.6 397 78.1
Gohir.D08G075000 Gossypium hirsutum HOM05D004820 ORTHO05D005946 5.2e-152 541.6 405 72.6
TWI14G0518 Tripterygium wilfordii HOM05D004820 ORTHO05D005946 1.2e-151 540.4 400 77.0
Gohir.A08G066300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 1.5e-151 540.0 405 80.2
Duzib138G0452 Durio zibethinus HOM05D004820 ORTHO05D005946 2.0e-151 539.7 402 76.6
Cpa.g.sc52.45 Carica papaya HOM05D004820 ORTHO05D005946 5.8e-151 538.1 403 79.4
CiPaw.08G106000 Carya illinoinensis HOM05D004820 ORTHO05D005946 9.9e-151 537.3 401 78.1
Sc05g0005630 Simmondsia chinensis HOM05D004820 ORTHO05D005946 1.3e-150 537.0 403 73.7
Thecc.01G277300 Theobroma cacao HOM05D004820 ORTHO05D005946 1.7e-150 536.6 402 79.9
TPR.G9917 Trifolium pratense HOM05D004820 ORTHO05D005946 2.9e-150 535.8 397 80.4
Ca_08606_v3 Cicer arietinum L. HOM05D004820 ORTHO05D005946 6.4e-150 534.6 397 82.6
TAR362G1079 Trochodendron aralioides HOM05D004820 ORTHO05D005946 8.4e-150 534.3 398 74.9
Medtr7g095000 Medicago truncatula HOM05D004820 ORTHO05D005946 1.1e-149 533.9 397 83.1
Duzib211G0468 Durio zibethinus HOM05D004820 ORTHO05D005946 1.4e-149 533.5 402 82.6
PGR044G0684 Punica granatum HOM05D004820 ORTHO05D005946 3.2e-149 532.3 399 84.0
CANSAT25G3765 Cannabis sativa HOM05D004820 ORTHO05D005946 4.2e-149 531.9 402 77.9
Potri.005G210600 Populus trichocarpa HOM05D004820 ORTHO05D005946 1.6e-148 530.0 402 79.6
Gohir.D08G204400 Gossypium hirsutum HOM05D004820 ORTHO05D005946 2.7e-148 529.3 401 77.1
Gorai.004G216400 Gossypium raimondii HOM05D004820 ORTHO05D005946 2.7e-148 529.3 401 77.1
Ciclev10020348m.g Citrus clementina HOM05D004820 ORTHO05D005946 6.0e-148 528.1 401 78.3
Gohir.A08G186300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 1.3e-147 526.9 401 76.8
QL12p021397 Quercus lobata HOM05D004820 ORTHO05D005946 6.6e-147 524.6 402 72.6
VMungo1383G2933 Vigna mungo HOM05D004820 ORTHO05D005946 1.1e-146 523.9 397 75.6
Gorai.004G079300 Gossypium raimondii HOM05D004820 ORTHO05D005946 3.6e-145 518.8 402 69.9
Lj4g0024215 Lotus japonicus HOM05D004820 ORTHO05D005946 3.6e-145 518.8 400 74.2
THA.LOC104801242 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 3.6e-145 518.8 397 78.3
MD11G1284100 Malus domestica HOM05D004820 ORTHO05D005946 4.8e-145 518.5 399 77.7
Psat3g064000 Pisum sativum HOM05D004820 ORTHO05D005946 4.8e-145 518.5 397 82.4
PSO210G1690 Papaver somniferum HOM05D004820 ORTHO05D005946 8.1e-145 517.7 402 77.1
CsaV3_7G028060 Cucumis sativus L. HOM05D004820 ORTHO05D005946 1.4e-144 516.9 401 78.8
Sabra05G0160800 Salix brachista HOM05D004820 ORTHO05D005946 1.4e-144 516.9 407 78.6
MD03G1263300 Malus domestica HOM05D004820 ORTHO05D005946 3.1e-144 515.8 399 79.4
THA.LOC104815940 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 2.2e-142 509.6 398 75.6
MELO3C015826.2 Cucumis melo HOM05D004820 ORTHO05D005946 2.9e-142 509.2 406 75.6
PSO761G0350 Papaver somniferum HOM05D004820 ORTHO05D005946 2.9e-142 509.2 402 71.1
HanXRQChr01g0003021 Helianthus annuus HOM05D004820 ORTHO05D005946 8.4e-142 507.7 400 76.5
arahy.Tifrunner.gnm1.ann1.HALK3W Arachis hypogaea HOM05D004820 ORTHO05D005946 2.4e-141 506.1 402 72.6
Phvul.005G035400 Phaseolus vulgaris HOM05D004820 ORTHO05D005946 4.2e-141 505.4 396 74.5
arahy.Tifrunner.gnm1.ann1.JHLY8X Arachis hypogaea HOM05D004820 ORTHO05D005946 5.4e-141 505.0 402 72.4
arahy.Tifrunner.gnm1.ann1.NQ54M2 Arachis hypogaea HOM05D004820 ORTHO05D005946 7.1e-141 504.6 402 72.6
Lalb_Chr06g0162971 Lupinus albus HOM05D004820 ORTHO05D005946 2.1e-140 503.1 398 73.6
AL1G12610 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 1.1e-138 497.3 401 70.6
Sed0001544 Sechium edule HOM05D004820 ORTHO05D005946 5.6e-138 495.0 397 78.1
HPP92_018354 Vanilla planifolia HOM05D004820 ORTHO05D005946 5.6e-138 495.0 403 75.4
Aa31LG1G9390 Aethionema arabicum HOM05D004820 ORTHO05D005946 9.6e-138 494.2 401 72.1
arahy.Tifrunner.gnm1.ann1.X2D3U2 Arachis hypogaea HOM05D004820 ORTHO05D005946 6.2e-137 491.5 402 70.9
A09p68340 Brassica napus HOM05D004820 ORTHO05D005946 2.2e-134 483.0 406 65.8
BcaC07g42265 Brassica carinata HOM05D004820 ORTHO05D005946 3.8e-134 482.3 400 66.5
C08p52910 Brassica napus HOM05D004820 ORTHO05D005946 1.1e-133 480.7 402 70.1
QL03p020183 Quercus lobata HOM05D004820 ORTHO05D005946 1.9e-133 479.9 391 71.4
AUR62027118 Chenopodium quinoa HOM05D004820 ORTHO05D005946 2.5e-133 479.6 398 70.1
ECA248G2754 Erigeron canadensis HOM05D004820 ORTHO05D005946 1.6e-132 476.9 396 69.4
Prupe.8G239700 Prunus persica HOM05D004820 ORTHO05D005946 2.1e-132 476.5 398 77.1
EL10Ac8g18597 Beta vulgaris HOM05D004820 ORTHO05D005946 2.7e-132 476.1 398 66.3
BolC8t52807H Brassica oleracea HOM05D004820 ORTHO05D005946 4.6e-132 475.3 402 69.9
AUR62012894 Chenopodium quinoa HOM05D004820 ORTHO05D005946 4.6e-132 475.3 395 71.6
Ah.01g024010 Amaranthus hybridus HOM05D004820 ORTHO05D005946 9.6e-130 467.6 392 70.4
Carub.0001s0228 Capsella rubella HOM05D004820 ORTHO05D005946 2.8e-129 466.1 311 76.5
FvH4_2g23380 Fragaria vesca HOM05D004820 ORTHO05D005946 4.8e-129 465.3 395 73.7
CARHR002470 Cardamine hirsuta HOM05D004820 ORTHO05D005946 6.2e-129 464.9 311 75.9
RcHm_v2.0_Chr6g0290841 Rosa chinensis HOM05D004820 ORTHO05D005946 6.2e-129 464.9 399 75.9
FAN15G1635 Fragaria x ananassa HOM05D004820 ORTHO05D005946 1.4e-128 463.8 395 76.2
FAN20G0972 Fragaria x ananassa HOM05D004820 ORTHO05D005946 4.0e-128 462.2 395 70.9
FAN27G0992 Fragaria x ananassa HOM05D004820 ORTHO05D005946 5.8e-127 458.4 404 74.3
Thhalv10009621m.g Eutrema salsugineum HOM05D004820 ORTHO05D005946 1.3e-126 457.2 304 77.0
FAN24G1940 Fragaria x ananassa HOM05D004820 ORTHO05D005946 1.1e-125 454.1 413 70.5
SEGI_11361 Sequoiadendron giganteum HOM05D004820 ORTHO05D005946 1.9e-125 453.4 391 69.3
AT1G03140 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 3.2e-125 452.6 309 75.7
A08p37470 Brassica napus HOM05D004820 ORTHO05D005946 9.3e-125 451.1 312 75.6
BraA08t35645Z Brassica rapa HOM05D004820 ORTHO05D005946 1.6e-124 450.3 312 75.3
BolC8t46841H Brassica oleracea HOM05D004820 ORTHO05D005946 2.7e-124 449.5 312 75.0
Sp1g02160 Schrenkiella parvula HOM05D004820 ORTHO05D005946 3.9e-123 445.7 304 76.0
C08p00420 Brassica napus HOM05D004820 ORTHO05D005946 1.5e-122 443.7 312 74.0
Mapoly0140s0012 Marchantia polymorpha HOM05D004820 ORTHO05D005946 2.5e-122 443.0 402 60.9
Pp3c21_19780 Physcomitrium patens HOM05D004820 ORTHO05D005946 7.4e-122 441.4 403 59.3
Zm00001eb426860 Zea mays HOM05D004820 ORTHO05D005946 6.3e-121 438.3 398 59.5
Zm00001eb324990 Zea mays HOM05D004820 ORTHO05D005946 5.3e-120 435.3 418 61.0
Zm00001eb426810 Zea mays HOM05D004820 ORTHO05D005946 1.5e-119 433.7 400 58.8
Zm00001eb426800 Zea mays HOM05D004820 ORTHO05D005946 7.7e-119 431.4 398 59.0
Os07g0571900 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 1.3e-118 430.6 419 60.6
Zm00001eb426850 Zea mays HOM05D004820 ORTHO05D005946 3.8e-118 429.1 399 58.1
Zm00001eb426820 Zea mays HOM05D004820 ORTHO05D005946 1.1e-117 427.6 400 58.5
Lj4g0011679 Lotus japonicus HOM05D004820 ORTHO05D005946 1.9e-117 426.8 395 63.5
AL1G45340 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 2.1e-116 423.3 400 59.5
SpUn0083_0020 Schrenkiella parvula HOM05D004820 ORTHO05D005946 1.1e-112 411.0 380 59.2
Sp5g11480 Schrenkiella parvula HOM05D004820 ORTHO05D005946 2.6e-111 406.4 380 58.7
SMO356G0463 Selaginella moellendorffii HOM05D004820 ORTHO05D005946 8.5e-110 401.4 405 62.5
Oeu028072.3 Olea europaea HOM05D004820 ORTHO05D005946 4.5e-103 379.0 284 88.7
PGSC0003DMG400010602 Solanum tuberosum HOM05D004820 ORTHO05D005946 2.2e-102 376.7 395 55.2
PGSC0003DMG400010600 Solanum tuberosum HOM05D004820 ORTHO05D005946 3.2e-101 372.9 398 55.3
Zm00001eb216840 Zea mays HOM05D004820 ORTHO05D005946 3.3e-98 362.8 400 55.8
Rhsim01G0274100 Rhododendron simsii HOM05D004820 ORTHO05D005946 3.1e-96 356.3 270 70.0
Lalb_Chr02g0142711 Lupinus albus HOM05D004820 ORTHO05D005946 4.5e-95 352.4 199 86.9
COL.COLO4_09079 Corchorus olitorius HOM05D004820 ORTHO05D005946 2.9e-94 349.7 432 56.5
CBR_g23335 Chara braunii HOM05D004820 ORTHO05D005946 8.5e-94 348.2 443 55.3
AT1G54590 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 3.1e-88 329.7 274 63.5
Solyc07g052190.1 Solanum lycopersicum HOM05D004820 ORTHO05D005946 1.0e-83 314.7 272 63.2
CAN.G198.19 Capsicum annuum HOM05D004820 ORTHO05D005946 5.0e-78 295.8 355 51.8
Sopen07g025700 Solanum pennellii HOM05D004820 ORTHO05D005946 4.0e-75 286.2 343 51.3
SHI31236 Sapria himalayana HOM05D004820 ORTHO05D005946 4.9e-73 279.3 286 59.1
Sopen07g025830 Solanum pennellii HOM05D004820 ORTHO05D005946 8.6e-70 268.5 239 61.9
Zm00001eb426870 Zea mays HOM05D004820 ORTHO05D005946 3.1e-67 260.0 148 83.1
GSVIVG01001158001 Vitis vinifera HOM05D004820 ORTHO05D005946 9.8e-66 255.0 135 88.9
Solyc07g052050.2 Solanum lycopersicum HOM05D004820 ORTHO05D005946 5.8e-58 229.2 158 70.9
Cpa.g.sc52.46 Carica papaya HOM05D004820 ORTHO05D005946 1.3e-54 218.0 118 86.4
HanXRQChr15g0487721 Helianthus annuus HOM05D004820 ORTHO05D005946 2.8e-52 210.3 168 64.3
SHI31234 Sapria himalayana HOM05D004820 ORTHO05D005946 6.2e-52 209.1 112 87.5
Lj1g0027313 Lotus japonicus HOM05D004820 ORTHO05D005946 1.6e-44 184.5 159 60.4
Os03g0701100 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 1.8e-43 181.0 286 46.2
Sopen07g025690 Solanum pennellii HOM05D004820 ORTHO05D005946 1.5e-42 177.9 98 85.7
Zm00001eb426830 Zea mays HOM05D004820 ORTHO05D005946 3.8e-41 173.3 96 85.4
Sopen07g025610 Solanum pennellii HOM05D004820 ORTHO05D005946 2.7e-39 167.2 257 44.7
MCO06G052 Micromonas commoda HOM05D004820 ORTHO05D005946 4.6e-39 166.4 156 52.6
Cre13.g567750 Chlamydomonas reinhardtii HOM05D004820 ORTHO05D005946 3.8e-33 146.7 426 34.5
Nitab4.5_0003852g0050 Nicotiana tabacum HOM05D004820 ORTHO05D005946 5.6e-29 132.9 178 45.5
Gohir.D05G222300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 6.2e-28 129.4 64 92.2
Gohir.D11G242500 Gossypium hirsutum HOM05D004820 ORTHO05D005946 1.8e-27 127.9 64 90.6
Gorai.009G229700 Gossypium raimondii HOM05D004820 ORTHO05D005946 1.8e-27 127.9 64 90.6
BraA09t42170Z Brassica rapa HOM05D004820 ORTHO05D005946 4.0e-27 126.7 158 57.6
Gorai.011G187700 Gossypium raimondii HOM05D004820 ORTHO05D005946 9.0e-27 125.6 64 89.1
CARHR182160 Cardamine hirsuta HOM05D004820 ORTHO05D005946 1.2e-26 125.2 116 56.9
vmacro14915 Vaccinium macrocarpon HOM05D004820 ORTHO05D005946 2.2e-25 120.9 141 66.0
TAR365G1077 Trochodendron aralioides HOM05D004820 ORTHO05D005946 7.1e-24 115.9 101 61.4
Zm00001eb078380 Zea mays HOM05D004820 ORTHO05D005946 7.9e-23 112.5 72 75.0
Nitab4.5_0003327g0040 Nicotiana tabacum HOM05D004820 ORTHO05D005946 5.1e-22 109.8 161 46.0
Zm00001eb180190 Zea mays HOM05D004820 ORTHO05D005946 1.5e-21 108.2 68 76.5
Zm00001eb017440 Zea mays HOM05D004820 ORTHO05D005946 3.7e-20 103.6 66 74.2
Zm00001eb368520 Zea mays HOM05D004820 ORTHO05D005946 3.7e-20 103.6 68 73.5
Nn4g23784 Nelumbo nucifera HOM05D004820 ORTHO05D005946 3.2e-16 90.5 108 48.1
Dinv32923 Davidia involucrata HOM05D004820 ORTHO05D005946 2.1e-12 77.8 44 90.9
C06p09790 Brassica napus HOM05D004820 ORTHO05D001418 1.4e-11 75.1 74 54.1
BolC6t36051H Brassica oleracea HOM05D004820 ORTHO05D001418 1.4e-11 75.1 74 54.1
Actinidia10913 Actinidia chinensis HOM05D004820 ORTHO05D005946 6.5e-09 66.2 38 92.1
BcaC08g43579 Brassica carinata HOM05D004820 ORTHO05D001418 7.9e-07 59.3 35 77.1


User provided reference genes

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