Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003233 Camellia sinensis var. sinensis HOM05D001790 ORTHO05D033938 7.1e-59 230.3 112 100.0
CSS0049651 Camellia sinensis var. sinensis HOM05D001790 ORTHO05D033938 1.9e-56 222.2 112 97.3
CSS0004971 Camellia sinensis var. sinensis HOM05D001790 ORTHO05D007425 4.6e-50 201.1 110 86.4
Actinidia30793 Actinidia chinensis HOM05D001790 ORTHO05D007425 1.5e-48 196.1 110 81.8
Rhsim06G0078100 Rhododendron simsii HOM05D001790 ORTHO05D007425 2.2e-47 192.2 110 81.8
Rhsim07G0204900 Rhododendron simsii HOM05D001790 ORTHO05D007425 1.4e-46 189.5 110 80.9
Dinv44801 Davidia involucrata HOM05D001790 ORTHO05D007425 2.0e-45 185.7 110 77.3
GSVIVG01004302001 Vitis vinifera HOM05D001790 ORTHO05D007425 3.4e-45 184.9 110 77.3
Cpa.g.sc36.175 Carica papaya HOM05D001790 ORTHO05D007425 5.9e-45 184.1 110 76.4
THA.LOC104814183 Tarenaya hassleriana HOM05D001790 ORTHO05D007425 5.9e-45 184.1 110 77.3
Ca_16039_v3 Cicer arietinum L. HOM05D001790 ORTHO05D007425 1.0e-44 183.3 110 75.5
AUR62027806 Chenopodium quinoa HOM05D001790 ORTHO05D007425 1.3e-44 183.0 110 74.5
CANSAT11G0398 Cannabis sativa HOM05D001790 ORTHO05D007425 2.9e-44 181.8 110 75.5
CARHR012190 Cardamine hirsuta HOM05D001790 ORTHO05D007425 2.9e-44 181.8 110 76.4
Nn3g19226 Nelumbo nucifera HOM05D001790 ORTHO05D007425 2.9e-44 181.8 110 74.5
CDE11G0514 Ceratophyllum demersum HOM05D001790 ORTHO05D007425 3.8e-44 181.4 110 74.5
AUR62018961 Chenopodium quinoa HOM05D001790 ORTHO05D007425 3.8e-44 181.4 110 74.5
DCAR_014069 Daucus carota HOM05D001790 ORTHO05D007425 3.8e-44 181.4 110 74.5
MD15G1373800 Malus domestica HOM05D001790 ORTHO05D007425 3.8e-44 181.4 110 76.4
A08p33190 Brassica napus HOM05D001790 ORTHO05D007425 6.5e-44 180.6 110 75.5
BraA08t35237Z Brassica rapa HOM05D001790 ORTHO05D007425 6.5e-44 180.6 110 75.5
FAN18G4557 Fragaria x ananassa HOM05D001790 ORTHO05D007425 6.5e-44 180.6 110 76.4
Lj1g0028118 Lotus japonicus HOM05D001790 ORTHO05D007425 6.5e-44 180.6 110 73.6
vmacro04723 Vaccinium macrocarpon HOM05D001790 ORTHO05D007425 6.5e-44 180.6 110 75.5
AL1G23040 Arabidopsis lyrata HOM05D001790 ORTHO05D007425 8.5e-44 180.3 110 75.5
Carub.0001s1152 Capsella rubella HOM05D001790 ORTHO05D007425 8.5e-44 180.3 110 74.5
Glyma.04G099400 Glycine max HOM05D001790 ORTHO05D007425 8.5e-44 180.3 110 73.6
Manes.18G064400 Manihot esculenta HOM05D001790 ORTHO05D007425 8.5e-44 180.3 110 72.7
Phvul.009G032700 Phaseolus vulgaris HOM05D001790 ORTHO05D007425 8.5e-44 180.3 110 74.5
Sc01g0000750 Simmondsia chinensis HOM05D001790 ORTHO05D007425 8.5e-44 180.3 110 72.7
MELO3C003560.2 Cucumis melo HOM05D001790 ORTHO05D007425 1.4e-43 179.5 109 74.3
vmacro04712 Vaccinium macrocarpon HOM05D001790 ORTHO05D007425 1.4e-43 179.5 110 78.2
AT1G11870 Arabidopsis thaliana HOM05D001790 ORTHO05D007425 1.9e-43 179.1 110 74.5
Aa31LG1G2860 Aethionema arabicum HOM05D001790 ORTHO05D007425 2.5e-43 178.7 110 74.5
Sp1g10490 Schrenkiella parvula HOM05D001790 ORTHO05D007425 2.5e-43 178.7 110 73.6
A09p64300 Brassica napus HOM05D001790 ORTHO05D007425 3.2e-43 178.3 111 74.8
BraA09t41773Z Brassica rapa HOM05D001790 ORTHO05D007425 3.2e-43 178.3 111 74.8
ClCG11G014250 Citrullus lanatus HOM05D001790 ORTHO05D007425 3.2e-43 178.3 109 73.4
CsaV3_3G047640 Cucumis sativus L. HOM05D001790 ORTHO05D007425 3.2e-43 178.3 109 73.4
TWI36G0174 Tripterygium wilfordii HOM05D001790 ORTHO05D007425 3.2e-43 178.3 110 71.8
Cfa017888 Carpinus fangiana HOM05D001790 ORTHO05D007425 4.2e-43 177.9 110 73.6
Thhalv10009769m.g Eutrema salsugineum HOM05D001790 ORTHO05D007425 4.2e-43 177.9 110 74.5
TAR629G1329 Trochodendron aralioides HOM05D001790 ORTHO05D007425 4.2e-43 177.9 110 72.7
VMungo1309G0728 Vigna mungo HOM05D001790 ORTHO05D007425 4.2e-43 177.9 110 72.7
FvH4_5g36670 Fragaria vesca HOM05D001790 ORTHO05D007425 5.5e-43 177.6 110 76.4
RcHm_v2.0_Chr7g0242571 Rosa chinensis HOM05D001790 ORTHO05D007425 5.5e-43 177.6 110 75.5
EL10Ac1g01156 Beta vulgaris HOM05D001790 ORTHO05D007425 7.2e-43 177.2 110 72.7
Lj4A726G66 Lonicera japonica HOM05D001790 ORTHO05D007425 7.2e-43 177.2 110 74.5
MD08G1187900 Malus domestica HOM05D001790 ORTHO05D007425 7.2e-43 177.2 110 75.5
C08p14990 Brassica napus HOM05D001790 ORTHO05D007425 1.2e-42 176.4 111 73.0
BolC8t49129H Brassica oleracea HOM05D001790 ORTHO05D007425 1.2e-42 176.4 111 73.0
CiPaw.15G046300 Carya illinoinensis HOM05D001790 ORTHO05D007425 1.2e-42 176.4 110 73.6
Ciclev10000915m.g Citrus clementina HOM05D001790 ORTHO05D007425 1.2e-42 176.4 110 72.7
Cc10_g06740 Coffea canephora HOM05D001790 ORTHO05D007425 1.2e-42 176.4 110 73.6
PGR044G2367 Punica granatum HOM05D001790 ORTHO05D007425 1.2e-42 176.4 110 75.5
Sed0003211 Sechium edule HOM05D001790 ORTHO05D007425 1.2e-42 176.4 110 72.7
Atru.chr13.1122 Acer truncatum HOM05D001790 ORTHO05D007425 1.6e-42 176.0 110 72.7
Prupe.1G522400 Prunus persica HOM05D001790 ORTHO05D007425 1.6e-42 176.0 110 72.7
C08p47910 Brassica napus HOM05D001790 ORTHO05D007425 2.1e-42 175.6 111 73.0
Migut.D01115 Erythranthe guttata HOM05D001790 ORTHO05D007425 2.1e-42 175.6 110 72.7
QL02p002533 Quercus lobata HOM05D001790 ORTHO05D007425 2.1e-42 175.6 110 71.8
Lsat_1_v5_gn_9_72921 Lactuca sativa HOM05D001790 ORTHO05D007425 2.7e-42 175.3 110 73.6
Aqoxy3G02611 Aquilegia oxysepala HOM05D001790 ORTHO05D007425 3.6e-42 174.9 110 70.9
Medtr3g099470 Medicago truncatula HOM05D001790 ORTHO05D007425 3.6e-42 174.9 110 72.7
Potri.002G100300 Populus trichocarpa HOM05D001790 ORTHO05D007425 3.6e-42 174.9 110 70.0
BolC8t52328H Brassica oleracea HOM05D001790 ORTHO05D007425 4.6e-42 174.5 111 73.9
COL.COLO4_12015 Corchorus olitorius HOM05D001790 ORTHO05D007425 4.6e-42 174.5 110 72.7
Eucgr.F00372 Eucalyptus grandis HOM05D001790 ORTHO05D007425 4.6e-42 174.5 110 72.7
FAN08G1454 Fragaria x ananassa HOM05D001790 ORTHO05D007425 4.6e-42 174.5 110 74.5
Gohir.A05G223700 Gossypium hirsutum HOM05D001790 ORTHO05D007425 4.6e-42 174.5 110 71.8
COL.COLO4_06422 Corchorus olitorius HOM05D001790 ORTHO05D007425 6.1e-42 174.1 110 72.7
Gohir.D05G226500 Gossypium hirsutum HOM05D001790 ORTHO05D007425 6.1e-42 174.1 110 71.8
Gorai.009G234100 Gossypium raimondii HOM05D001790 ORTHO05D007425 7.9e-42 173.7 110 70.9
CAN.G857.9 Capsicum annuum HOM05D001790 ORTHO05D007425 1.0e-41 173.3 110 71.8
ATR0829G131 Amborella trichopoda HOM05D001790 ORTHO05D007425 1.3e-41 172.9 110 71.8
FAN13G1337 Fragaria x ananassa HOM05D001790 ORTHO05D007425 1.3e-41 172.9 110 73.6
Lalb_Chr11g0065281 Lupinus albus HOM05D001790 ORTHO05D007425 1.3e-41 172.9 110 71.8
Psat5g050600 Pisum sativum HOM05D001790 ORTHO05D007425 1.3e-41 172.9 110 70.9
Thecc.08G102800 Theobroma cacao HOM05D001790 ORTHO05D007425 1.3e-41 172.9 110 72.7
FAN04G1975 Fragaria x ananassa HOM05D001790 ORTHO05D007425 1.8e-41 172.6 110 73.6
Hund26982 Selenicereus undatus HOM05D001790 ORTHO05D007425 1.8e-41 172.6 110 73.6
SGA_v2.0_scaffold37G14719 Striga asiatica HOM05D001790 ORTHO05D007425 1.8e-41 172.6 110 71.8
PSO063G1969 Papaver somniferum HOM05D001790 ORTHO05D007425 2.3e-41 172.2 110 70.9
ECA232G4436 Erigeron canadensis HOM05D001790 ORTHO05D007425 5.1e-41 171.0 110 72.7
PSO017G6936 Papaver somniferum HOM05D001790 ORTHO05D007425 5.1e-41 171.0 110 70.9
FAN04G1529 Fragaria x ananassa HOM05D001790 ORTHO05D007425 6.7e-41 170.6 110 72.7
Solyc04g074630.4 Solanum lycopersicum HOM05D001790 ORTHO05D007425 1.1e-40 169.9 110 70.9
Sopen04g029600 Solanum pennellii HOM05D001790 ORTHO05D007425 1.1e-40 169.9 110 70.9
Duzib093G1820 Durio zibethinus HOM05D001790 ORTHO05D007425 1.5e-40 169.5 110 70.9
Nitab4.5_0010488g0020 Nicotiana tabacum HOM05D001790 ORTHO05D007425 1.5e-40 169.5 110 70.9
arahy.Tifrunner.gnm1.ann1.VN8WUD Arachis hypogaea HOM05D001790 ORTHO05D007425 1.9e-40 169.1 110 68.2
Nitab4.5_0000786g0120 Nicotiana tabacum HOM05D001790 ORTHO05D007425 1.9e-40 169.1 110 70.9
PGSC0003DMG401030816 Solanum tuberosum HOM05D001790 ORTHO05D007425 5.7e-40 167.5 110 69.1
Zm00001eb166980 Zea mays HOM05D001790 ORTHO05D007425 5.7e-40 167.5 109 72.5
arahy.Tifrunner.gnm1.ann1.LM7JF4 Arachis hypogaea HOM05D001790 ORTHO05D007425 7.4e-40 167.2 110 67.3
arahy.Tifrunner.gnm1.ann1.AJ67NU Arachis hypogaea HOM05D001790 ORTHO05D007425 9.7e-40 166.8 110 67.3
HanXRQChr09g0246831 Helianthus annuus HOM05D001790 ORTHO05D007425 9.7e-40 166.8 110 70.0
PSO782G4258 Papaver somniferum HOM05D001790 ORTHO05D007425 9.7e-40 166.8 110 69.1
Peaxi162Scf00030g02221 Petunia axillaris HOM05D001790 ORTHO05D007425 9.7e-40 166.8 110 69.1
Dinv07070 Davidia involucrata HOM05D001790 ORTHO05D007425 2.8e-39 165.2 110 70.9
SGA_v2.0_scaffold5G02779 Striga asiatica HOM05D001790 ORTHO05D007425 2.8e-39 165.2 110 68.2
Haze_18277 Corylus avellana HOM05D001790 ORTHO05D007425 6.3e-39 164.1 100 74.0
Os11g0610900 Oryza sativa ssp. japonica HOM05D001790 ORTHO05D007425 6.3e-39 164.1 109 69.7
SEGI_05166 Sequoiadendron giganteum HOM05D001790 ORTHO05D007425 2.4e-38 162.2 110 64.5
Haze_18273 Corylus avellana HOM05D001790 ORTHO05D007425 3.1e-38 161.8 100 73.0
HPP92_026795 Vanilla planifolia HOM05D001790 ORTHO05D007425 2.0e-37 159.1 110 67.3
HPP92_000770 Vanilla planifolia HOM05D001790 ORTHO05D007425 5.9e-37 157.5 110 66.4
Mapoly0016s0010 Marchantia polymorpha HOM05D001790 ORTHO05D007425 5.0e-36 154.5 110 62.7
Pp3c5_28560 Physcomitrium patens HOM05D001790 ORTHO05D007425 4.2e-35 151.4 110 61.8
AagrBONN_evm.TU.Sc2ySwM_368.3217 Anthoceros agrestis HOM05D001790 ORTHO05D007425 7.2e-35 150.6 110 63.6
unitig_90.g27543 Utricularia gibba HOM05D001790 ORTHO05D007425 7.2e-35 150.6 110 67.3
CBR_g10918 Chara braunii HOM05D001790 ORTHO05D007425 3.6e-34 148.3 109 61.5
MBI04_g30769_MAGBIO Magnolia biondii HOM05D001790 ORTHO05D007425 7.9e-34 147.1 110 64.5
HPP92_000746 Vanilla planifolia HOM05D001790 ORTHO05D007425 3.7e-31 138.3 110 63.6
Cre02.g082877 Chlamydomonas reinhardtii HOM05D001790 ORTHO05D007425 9.1e-30 133.7 110 51.8
BcaB03g13225 Brassica carinata HOM05D001790 ORTHO05D007425 5.0e-28 127.9 79 74.7
Lj4A97T76 Lonicera japonica HOM05D001790 ORTHO05D033938 3.2e-27 125.2 79 73.4
PRCOL_00005275 Prasinoderma coloniale HOM05D001790 ORTHO05D007425 2.7e-26 122.1 111 50.5
MCO07G674 Micromonas commoda HOM05D001790 ORTHO05D007425 8.8e-25 117.1 109 45.0
Lj3A823T68 Lonicera japonica HOM05D001790 ORTHO05D007425 2.0e-21 105.9 78 60.3
vmacro04728 Vaccinium macrocarpon HOM05D001790 ORTHO05D007425 1.8e-14 82.8 50 72.0
Oeu008907.1 Olea europaea HOM05D001790 ORTHO05D007425 3.6e-10 68.6 46 67.4
Os01g0559100 Oryza sativa ssp. japonica HOM05D001790 ORTHO05D003691 3.6e-10 68.6 101 32.7
AUR62011866 Chenopodium quinoa HOM05D001790 ORTHO05D003691 8.0e-10 67.4 101 32.7
AUR62024709 Chenopodium quinoa HOM05D001790 ORTHO05D003691 8.0e-10 67.4 101 32.7
Zm00001eb400980 Zea mays HOM05D001790 ORTHO05D003691 8.0e-10 67.4 101 31.7
A02p38650 Brassica napus HOM05D001790 ORTHO05D003691 1.0e-09 67.0 107 33.6
C02p58140 Brassica napus HOM05D001790 ORTHO05D003691 1.0e-09 67.0 107 33.6
BolC2t11882H Brassica oleracea HOM05D001790 ORTHO05D003691 1.0e-09 67.0 107 33.6
BraA02t08841Z Brassica rapa HOM05D001790 ORTHO05D003691 1.0e-09 67.0 107 33.6
Zm00001eb113140 Zea mays HOM05D001790 ORTHO05D003691 1.0e-09 67.0 101 31.7
Ah.11g049780 Amaranthus hybridus HOM05D001790 ORTHO05D003691 1.4e-09 66.6 101 31.7
Hund21240 Selenicereus undatus HOM05D001790 ORTHO05D003691 1.4e-09 66.6 101 31.7
Os03g0198400 Oryza sativa ssp. japonica HOM05D001790 ORTHO05D003691 1.8e-09 66.2 101 31.7
Sc06g0003380 Simmondsia chinensis HOM05D001790 ORTHO05D003691 1.8e-09 66.2 101 30.7
EL10As5g23472 Beta vulgaris HOM05D001790 ORTHO05D003691 2.3e-09 65.9 101 31.7
Hund07063 Selenicereus undatus HOM05D001790 ORTHO05D003691 4.0e-09 65.1 100 31.0
Nitab4.5_0005388g0030 Nicotiana tabacum HOM05D001790 ORTHO05D003691 6.8e-09 64.3 101 30.7
Nitab4.5_0008677g0040 Nicotiana tabacum HOM05D001790 ORTHO05D003691 6.8e-09 64.3 101 30.7
Sc16g0008440 Simmondsia chinensis HOM05D001790 ORTHO05D003691 8.8e-09 63.9 101 28.7
Carub.0001s3362 Capsella rubella HOM05D001790 ORTHO05D003691 1.5e-08 63.2 104 30.8
CiPaw.07G016900 Carya illinoinensis HOM05D001790 ORTHO05D003691 2.6e-08 62.4 101 28.7
Sp2g20690 Schrenkiella parvula HOM05D001790 ORTHO05D003691 2.6e-08 62.4 104 32.7
PGSC0003DMG400013480 Solanum tuberosum HOM05D001790 ORTHO05D003691 2.6e-08 62.4 101 29.7
CARHR289470 Cardamine hirsuta HOM05D001790 ORTHO05D003691 3.4e-08 62.0 104 29.8
Aa31LG11G9230 Aethionema arabicum HOM05D001790 ORTHO05D003691 5.7e-08 61.2 104 27.9
Ah.02g112000 Amaranthus hybridus HOM05D001790 ORTHO05D003691 5.7e-08 61.2 96 31.2
Pp3c13_16820 Physcomitrium patens HOM05D001790 ORTHO05D003691 5.7e-08 61.2 102 33.3
SalBow3G2039 Salvia bowleyana HOM05D001790 ORTHO05D003691 5.7e-08 61.2 102 34.3
SalBow4G2898 Salvia bowleyana HOM05D001790 ORTHO05D003691 5.7e-08 61.2 101 30.7
SEGI_34874 Sequoiadendron giganteum HOM05D001790 ORTHO05D003691 7.5e-08 60.8 101 27.7
Pp3c4_17270 Physcomitrium patens HOM05D001790 ORTHO05D003691 9.8e-08 60.5 91 31.9
Carub.0006s2506 Capsella rubella HOM05D001790 ORTHO05D003691 2.8e-07 58.9 107 29.9
QL06p003654 Quercus lobata HOM05D001790 ORTHO05D003691 2.8e-07 58.9 101 28.7
AT5G27470 Arabidopsis thaliana HOM05D001790 ORTHO05D003691 3.7e-07 58.5 104 28.8
ClCG03G016950 Citrullus lanatus HOM05D001790 ORTHO05D003691 3.7e-07 58.5 101 30.7
Cc02_g33530 Coffea canephora HOM05D001790 ORTHO05D003691 4.8e-07 58.2 101 29.7
AL6G39530 Arabidopsis lyrata HOM05D001790 ORTHO05D003691 6.3e-07 57.8 104 27.9
HPP92_015619 Vanilla planifolia HOM05D001790 ORTHO05D003691 6.3e-07 57.8 101 26.7
AL6G39540 Arabidopsis lyrata HOM05D001790 ORTHO05D003691 1.1e-06 57.0 104 29.8
SMO146G0126 Selaginella moellendorffii HOM05D001790 ORTHO05D003691 1.4e-06 56.6 101 28.7
AL1G50890 Arabidopsis lyrata HOM05D001790 ORTHO05D003691 1.8e-06 56.2 104 27.9
Sopen04g033440 Solanum pennellii HOM05D001790 ORTHO05D003691 1.8e-06 56.2 72 36.1
Sopen04g033740 Solanum pennellii HOM05D001790 ORTHO05D003691 1.8e-06 56.2 72 36.1
BcaC03g17790 Brassica carinata HOM05D001790 ORTHO05D003691 2.4e-06 55.8 107 32.7
ECA246G2160 Erigeron canadensis HOM05D001790 ORTHO05D003691 3.1e-06 55.5 108 29.6
HPP92_015354 Vanilla planifolia HOM05D001790 ORTHO05D003691 4.1e-06 55.1 72 34.7
BcaNung02448 Brassica carinata HOM05D001790 ORTHO05D003691 7.0e-06 54.3 84 35.7
BcaNung04373 Brassica carinata HOM05D001790 ORTHO05D003691 7.0e-06 54.3 84 36.9
BolC7t44620H Brassica oleracea HOM05D001790 ORTHO05D003691 7.0e-06 54.3 84 35.7
CAN.G1091.2 Capsicum annuum HOM05D001790 ORTHO05D003691 9.1e-06 53.9 101 27.7


User provided reference genes

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