Gene: AT5G27470

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G27470
  • Transcript Identifier AT5G27470.1
  • Gene Type Coding gene
  • Location Chr5 : 9695087-9697154 : positive

Gene Family Information

  • ID HOM05D001790
  • #Genes/#Species 365/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G27470.1
  • uniprot Q39230

Descriptions

  • Description seryl-tRNA synthetase / serine-tRNA ligase
  • Computational description seryl-tRNA synthetase / serine--tRNA ligase; FUNCTIONS IN: serine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion, seryl-tRNA aminoacylation; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: tRNA-binding arm (InterPro:IPR010978), Seryl-tRNA synthetase, class IIa, N-terminal (InterPro:IPR015866), Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain (InterPro:IPR002314), Seryl-tRNA synthetase, class IIa (InterPro:IPR002317), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195), Seryl-tRNA synthetase, class IIa, C-terminal (InterPro:IPR018156); BEST Arabidopsis thaliana protein match is: Seryl-tRNA synthetase (TAIR:AT1G11870.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006412
IEA
GOA Databasetranslation
GO:0006434
IEA
GOA Databaseseryl-tRNA aminoacylation
GO:0006434
IBA
Gene Ontologyseryl-tRNA aminoacylation1
GO:0006434
IEA
InterProseryl-tRNA aminoacylation
GO:0006418
IEA
GOA DatabasetRNA aminoacylation for protein translation
GO:0006418
IEA
InterProtRNA aminoacylation for protein translation
GO:0046686
IEP
GOA Databaseresponse to cadmium ion
GO:0097056
IEA
Gene Ontologyselenocysteinyl-tRNA(Sec) biosynthetic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004828
IEA
GOA Databaseserine-tRNA ligase activity
GO:0004828
IBA
Gene Ontologyserine-tRNA ligase activity1
GO:0004828
IEA
InterProserine-tRNA ligase activity
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0004812
IEA
GOA Databaseaminoacyl-tRNA ligase activity
GO:0004812
IEA
InterProaminoacyl-tRNA ligase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0000166
IEA
InterPronucleotide binding
GO:0016874
IEA
GOA Databaseligase activity
GO:0000049
IBA
Gene OntologytRNA binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0005829
IDA
IEA
GOA Databasecytosol
GO:0005829
HDA
ISS, IBA
Gene Ontologycytosol1 2 3
GO:0009536
HDA
Gene Ontologyplastid4

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T)
IPR002317 Serine-tRNA ligase, type1
IPR033729 Serine-tRNA ligase catalytic core domain
IPR015866 Serine-tRNA synthetase, type1, N-terminal
IPR042103 Serine-tRNA synthetase, type1, N-terminal domain superfamily
IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm
Mapman id Description
17.2.18 Protein biosynthesis.aminoacyl-tRNA synthetase activities.serine-tRNA ligase