Gene: Sopen04g033740
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen04g033740
- Transcript Identifier Sopen04g033740.1
- Gene Type Coding gene
- Location Spenn-ch04 : 74994796-74996774 : negative
Gene Family Information
- ID HOM05D001790
- #Genes/#Species 365/99
- Phylogenetic origin
- ID ORTHO05D003691
- #Genes/#Species 209/98
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid Sopen04g033740.1
Descriptions
- Description Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase) (SerRS) - Helianthus annuus (Common sunflower), seryl-tRNA synthetase / serine--tRNA ligase | FUNCTIONS IN: serine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding | INVOLVED IN: response to cadmium ion, seryl-tRNA aminoacylation | LOCATED IN: cytosol | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: tRNA-binding arm , Seryl-tRNA synthetase, class IIa, N-terminal , Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain , Seryl-tRNA synthetase, class IIa , Aminoacyl-tRNA synthetase, class II, conserved domain , Seryl-tRNA synthetase, class IIa, C-terminal | BEST Arabidopsis thaliana protein match is: Seryl-tRNA synthetase
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006434 | IEA | InterPro | seryl-tRNA aminoacylation | |
| GO:0006418 | IEA | InterPro | tRNA aminoacylation for protein translation | |
| GO:0046686 | ISO | PLAZA Integrative Orthology | response to cadmium ion | AT5G27470 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000166 | IEA | InterPro | nucleotide binding | |
| GO:0004828 | IEA | InterPro | serine-tRNA ligase activity | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0004812 | IEA | InterPro | aminoacyl-tRNA ligase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT5G27470 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR033729 | Serine-tRNA ligase catalytic core domain |
| IPR002317 | Serine-tRNA ligase, type1 |
| IPR015866 | Serine-tRNA synthetase, type1, N-terminal |
| IPR002314 | Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) |
| IPR010978 | Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm |
| IPR042103 | Serine-tRNA synthetase, type1, N-terminal domain superfamily |
| Mapman id | Description |
|---|---|
| 17.2.18 | Protein biosynthesis.aminoacyl-tRNA synthetase activities.serine-tRNA ligase |