Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003139 Camellia sinensis var. sinensis HOM05D006136 ORTHO05D007244 0.0e+00 1201.8 634 100.0
CSS0019621 Camellia sinensis var. sinensis HOM05D006136 ORTHO05D007244 2.2e-242 842.4 459 97.4
Rhsim08G0117200 Rhododendron simsii HOM05D006136 ORTHO05D007244 1.0e-170 604.4 688 53.8
vmacro17832 Vaccinium macrocarpon HOM05D006136 ORTHO05D007244 1.8e-167 593.6 693 52.7
Dinv12632 Davidia involucrata HOM05D006136 ORTHO05D002774 4.0e-167 592.4 617 55.8
GSVIVG01038350001 Vitis vinifera HOM05D006136 ORTHO05D007244 6.5e-133 478.8 604 47.0
Lj9A583T57 Lonicera japonica HOM05D006136 ORTHO05D007244 1.6e-131 474.2 691 45.6
QL05p072260 Quercus lobata HOM05D000321 ORTHO05D007244 2.3e-130 470.3 610 47.4
QL11p005727 Quercus lobata HOM05D006136 ORTHO05D007244 2.0e-126 457.2 771 40.5
Cfa012873 Carpinus fangiana HOM05D006136 ORTHO05D007244 7.2e-124 448.7 630 44.1
TAR626G0660 Trochodendron aralioides HOM05D006136 ORTHO05D007244 7.2e-124 448.7 613 45.2
CiPaw.07G237600 Carya illinoinensis HOM05D006136 ORTHO05D007244 1.4e-122 444.5 621 45.6
Manes.02G224001 Manihot esculenta HOM05D006136 ORTHO05D007244 9.8e-113 411.8 607 41.5
Manes.11G052190 Manihot esculenta HOM05D006136 ORTHO05D007244 1.7e-112 411.0 608 41.4
Oeu000955.1 Olea europaea HOM05D006136 ORTHO05D007244 1.1e-111 408.3 614 42.8
Actinidia33603 Actinidia chinensis HOM05D006136 ORTHO05D007244 1.6e-107 394.4 377 60.5
TWI32G0914 Tripterygium wilfordii HOM05D006136 ORTHO05D007244 1.0e-106 391.7 657 38.5
Cpa.g.sc46.113 Carica papaya HOM05D006136 ORTHO05D007244 1.3e-104 384.8 753 35.2
MSTRG.26507 Avicennia marina HOM05D006136 ORTHO05D007244 4.9e-104 382.9 631 39.9
DCAR_020445 Daucus carota HOM05D006136 ORTHO05D002774 8.3e-104 382.1 692 38.9
Glyma.09G084800 Glycine max HOM05D006136 ORTHO05D007244 8.3e-104 382.1 624 40.1
Cc06_g23510 Coffea canephora HOM05D006136 ORTHO05D007244 1.1e-100 371.7 601 44.1
Prupe.1G000700 Prunus persica HOM05D006136 ORTHO05D007244 2.3e-98 364.0 639 40.2
Glyma.15G193100 Glycine max HOM05D006136 ORTHO05D007244 4.0e-98 363.2 623 39.3
Ciclev10007497m.g Citrus clementina HOM05D006136 ORTHO05D007244 4.4e-97 359.8 800 34.9
Peaxi162Scf00474g00018 Petunia axillaris HOM05D006136 ORTHO05D007244 3.7e-96 356.7 662 39.0
Duzib170G0744 Durio zibethinus HOM05D006136 ORTHO05D007244 1.4e-95 354.8 711 36.8
arahy.Tifrunner.gnm1.ann1.46MDAV Arachis hypogaea HOM05D006136 ORTHO05D007244 2.0e-94 350.9 626 37.4
Thecc.09G202200 Theobroma cacao HOM05D006136 ORTHO05D007244 4.6e-94 349.7 706 36.0
Haze_21244 Corylus avellana HOM05D006136 ORTHO05D007244 6.0e-94 349.4 580 41.6
EL10Ac2g03821 Beta vulgaris HOM05D006136 ORTHO05D007244 1.7e-93 347.8 663 35.7
Gohir.D08G026500 Gossypium hirsutum HOM05D006136 ORTHO05D007244 3.0e-93 347.1 699 35.2
Gorai.004G023000 Gossypium raimondii HOM05D006136 ORTHO05D007244 3.0e-93 347.1 699 35.1
Atru.chr7.1014 Acer truncatum HOM05D006136 ORTHO05D007244 3.9e-93 346.7 793 33.0
Gohir.A08G016500 Gossypium hirsutum HOM05D006136 ORTHO05D007244 3.9e-93 346.7 695 35.0
COL.COLO4_09001 Corchorus olitorius HOM05D006136 ORTHO05D007244 2.5e-92 344.0 707 34.2
Potri.018G151300 Populus trichocarpa HOM05D006136 ORTHO05D007244 2.5e-92 344.0 618 40.3
Sabra18G0127000 Salix brachista HOM05D006136 ORTHO05D007244 1.6e-91 341.3 619 40.1
Phvul.009G217200 Phaseolus vulgaris HOM05D006136 ORTHO05D007244 2.1e-91 340.9 633 38.2
Lsat_1_v5_gn_5_82020 Lactuca sativa HOM05D006136 ORTHO05D007244 8.1e-91 339.0 594 39.9
Lalb_Chr08g0233201 Lupinus albus HOM05D006136 ORTHO05D007244 4.0e-90 336.7 650 36.9
Sc06g0001020 Simmondsia chinensis HOM05D006136 ORTHO05D007244 1.5e-89 334.7 731 34.3
Lj6g0010551 Lotus japonicus HOM05D006136 ORTHO05D007244 1.3e-88 331.6 676 35.7
Nitab4.5_0000807g0150 Nicotiana tabacum HOM05D006136 ORTHO05D007244 4.9e-88 329.7 742 35.8
Eucgr.C02149 Eucalyptus grandis HOM05D006136 ORTHO05D007244 1.1e-87 328.6 689 36.6
VMungo1309G0146 Vigna mungo HOM05D006136 ORTHO05D007244 7.8e-86 322.4 639 36.9
MELO3C010014.2 Cucumis melo HOM05D006136 ORTHO05D007244 1.0e-85 322.0 674 36.5
CsaV3_1G044190 Cucumis sativus L. HOM05D006136 ORTHO05D007244 9.5e-84 315.5 681 35.1
Aqoxy7G02564 Aquilegia oxysepala HOM05D006136 ORTHO05D007244 1.2e-83 315.1 788 32.6
RcHm_v2.0_Chr4g0384741 Rosa chinensis HOM05D006136 ORTHO05D007244 4.7e-83 313.2 692 35.3
SalBow5G5580 Salvia bowleyana HOM05D006136 ORTHO05D007244 1.8e-82 311.2 662 34.4
ClCG03G011600 Citrullus lanatus HOM05D006136 ORTHO05D007244 2.3e-82 310.8 676 35.8
PGSC0003DMG400013541 Solanum tuberosum HOM05D006136 ORTHO05D007244 2.3e-82 310.8 719 33.5
ECA234G2139 Erigeron canadensis HOM05D006136 ORTHO05D007244 5.8e-81 306.2 705 34.3
HanXRQChr10g0309281 Helianthus annuus HOM05D006136 ORTHO05D007244 5.8e-81 306.2 690 34.5
Psat1g019160 Pisum sativum HOM05D006136 ORTHO05D007244 5.8e-81 306.2 692 33.7
Sopen07g022390 Solanum pennellii HOM05D006136 ORTHO05D007244 2.2e-80 304.3 792 31.1
Nn5g26953 Nelumbo nucifera HOM05D006136 ORTHO05D007244 4.9e-80 303.1 449 43.2
Migut.L01610 Erythranthe guttata HOM05D006136 ORTHO05D007244 4.1e-79 300.1 693 33.0
MD04G1000700 Malus domestica HOM05D006136 ORTHO05D007244 5.4e-79 299.7 741 32.9
FAN17G2087 Fragaria x ananassa HOM05D006136 ORTHO05D007244 2.1e-78 297.7 683 34.6
PSO478G4925 Papaver somniferum HOM05D006136 ORTHO05D007244 3.5e-78 297.0 723 32.2
Medtr2g048340 Medicago truncatula HOM05D006136 ORTHO05D007244 7.8e-78 295.8 671 33.4
Ca_02520_v3 Cicer arietinum L. HOM05D006136 ORTHO05D007244 1.7e-77 294.7 609 36.3
PSO782G1690 Papaver somniferum HOM05D006136 ORTHO05D007244 3.9e-77 293.5 723 32.1
AUR62009114 Chenopodium quinoa HOM05D000163 ORTHO05D007244 1.5e-76 291.6 732 33.5
PGR044G0474 Punica granatum HOM05D006136 ORTHO05D007244 4.7e-75 286.6 673 35.1
Nitab4.5_0000170g0140 Nicotiana tabacum HOM05D006136 ORTHO05D007244 1.1e-74 285.4 732 33.1
MBI16_g40727_MAGBIO Magnolia biondii HOM05D006136 ORTHO05D007244 1.4e-74 285.0 635 34.8
AUR62039148 Chenopodium quinoa HOM05D006136 ORTHO05D007244 2.0e-73 281.2 733 33.0
ATR0626G098 Amborella trichopoda HOM05D006136 ORTHO05D007244 3.4e-73 280.4 612 33.8
Sp6g19810 Schrenkiella parvula HOM05D006136 ORTHO05D007244 2.9e-72 277.3 697 33.7
SGA_v2.0_scaffold21G09584 Striga asiatica HOM05D006136 ORTHO05D007244 2.9e-72 277.3 618 34.6
FAN12G0507 Fragaria x ananassa HOM05D006136 ORTHO05D007244 2.4e-71 274.2 694 33.0
Thhalv10012942m.g Eutrema salsugineum HOM05D006136 ORTHO05D007244 8.7e-69 265.8 682 31.4
CARHR271930 Cardamine hirsuta HOM05D006136 ORTHO05D007244 1.5e-68 265.0 773 30.0
AL8G34230 Arabidopsis lyrata HOM05D006136 ORTHO05D007244 1.6e-67 261.5 388 41.0
AT5G58130 Arabidopsis thaliana HOM05D006136 ORTHO05D007244 3.4e-65 253.8 388 39.9
Zm00001eb209220 Zea mays HOM05D006136 ORTHO05D007244 4.4e-65 253.4 620 34.4
FAN12G3399 Fragaria x ananassa HOM05D006136 ORTHO05D007244 1.7e-64 251.5 472 38.1
HPP92_017041 Vanilla planifolia HOM05D006136 ORTHO05D007244 2.4e-63 247.7 528 36.0
CANSAT01G2594 Cannabis sativa HOM05D006136 ORTHO05D007244 1.3e-61 241.9 666 30.9
THA.LOC104803376 Tarenaya hassleriana HOM05D006136 ORTHO05D007244 1.3e-61 241.9 612 32.5
Aa31LG3G13960 Aethionema arabicum HOM05D006136 ORTHO05D007244 1.9e-60 238.0 433 40.0
FAN22G1396 Fragaria x ananassa HOM05D006136 ORTHO05D007244 1.9e-60 238.0 604 33.1
Carub.0008s1868 Capsella rubella HOM05D006136 ORTHO05D007244 3.3e-60 237.3 389 39.1
unitig_699.g19255 Utricularia gibba HOM05D006136 ORTHO05D007244 4.3e-60 236.9 417 36.5
C09p50030 Brassica napus HOM05D006136 ORTHO05D007244 9.6e-60 235.7 737 29.9
Os02g0138200 Oryza sativa ssp. japonica HOM05D006136 ORTHO05D007244 9.6e-60 235.7 600 32.7
BolC9t57856H Brassica oleracea HOM05D006136 ORTHO05D007244 2.1e-59 234.6 737 29.9
A10p16060 Brassica napus HOM05D006136 ORTHO05D007244 4.8e-59 233.4 399 37.1
BcaC04g19905 Brassica carinata HOM05D006136 ORTHO05D007244 8.1e-59 232.6 737 29.0
BraA10t43623Z Brassica rapa HOM05D006136 ORTHO05D007244 2.4e-58 231.1 399 36.8
BcaB08g36165 Brassica carinata HOM05D006136 ORTHO05D007244 2.0e-57 228.0 757 28.8
RcHm_v2.0_Chr5g0003141 Rosa chinensis HOM05D006136 ORTHO05D007244 7.6e-57 226.1 632 32.6
TPR.G18712 Trifolium pratense HOM05D006136 ORTHO05D007244 3.9e-53 213.8 631 29.3
GSVIVG01038333001 Vitis vinifera HOM05D006136 ORTHO05D007244 1.1e-50 205.7 173 57.2
SEGI_05126 Sequoiadendron giganteum HOM05D006136 ORTHO05D007244 1.7e-48 198.4 227 48.9
Solyc07g042740.3 Solanum lycopersicum HOM05D006136 ORTHO05D007244 5.5e-47 193.4 228 45.2
PGR044G0304 Punica granatum HOM05D006136 ORTHO05D007244 6.7e-45 186.4 612 33.5
CDE05G3219 Ceratophyllum demersum HOM05D006136 ORTHO05D007244 1.6e-43 181.8 322 37.0
Lj1g0026291 Lotus japonicus HOM05D006136 ORTHO05D007244 1.2e-38 165.6 313 38.0
arahy.Tifrunner.gnm1.ann1.27MYTD Arachis hypogaea HOM05D006136 ORTHO05D007244 3.0e-29 134.4 136 51.5
Mapoly0169s0023 Marchantia polymorpha HOM05D006136 ORTHO05D007244 3.0e-29 134.4 194 42.8
arahy.Tifrunner.gnm1.ann1.QC7K1D Arachis hypogaea HOM05D006136 ORTHO05D007244 3.3e-28 131.0 92 67.4
arahy.Tifrunner.gnm1.ann1.Q88MA9 Arachis hypogaea HOM05D006136 ORTHO05D007244 2.8e-27 127.9 92 64.1
SMO367G1245 Selaginella moellendorffii HOM05D006136 ORTHO05D007244 3.7e-27 127.5 676 25.3
Sed0020259 Sechium edule HOM05D006136 ORTHO05D007244 1.2e-25 122.5 483 28.8
AagrBONN_evm.TU.Sc2ySwM_228.2439 Anthoceros agrestis HOM05D006136 ORTHO05D007244 3.2e-23 114.4 170 38.2
FvH4_4g00130 Fragaria vesca HOM05D006136 ORTHO05D007244 7.9e-22 109.8 492 28.5
arahy.Tifrunner.gnm1.ann1.SWI1TY Arachis hypogaea HOM05D006136 ORTHO05D007244 3.9e-21 107.5 293 29.0
Glyma.07G231200 Glycine max HOM05D003235 ORTHO05D007244 3.3e-20 104.4 79 58.2
Pp3c1_8430 Physcomitrium patens HOM05D006136 ORTHO05D007244 4.4e-20 104.0 142 43.7
Hund03317 Selenicereus undatus HOM05D006136 ORTHO05D007244 3.7e-19 100.9 497 26.4
Hma1.2p1_2895F.1_g329976 Hydrangea macrophylla HOM05D006136 ORTHO05D007244 1.3e-16 92.4 58 75.9
Nitab4.5_0002310g0140 Nicotiana tabacum HOM05D006136 ORTHO05D007244 5.5e-15 87.0 200 35.5
Solyc07g042700.4 Solanum lycopersicum HOM05D006136 ORTHO05D007244 1.0e-13 82.8 164 37.8
TPR.G20669 Trifolium pratense HOM05D006136 ORTHO05D007244 2.2e-11 75.1 68 61.8
CBR_g39420 Chara braunii HOM05D006136 ORTHO05D007244 6.3e-11 73.6 149 35.6
BcaC03g14120 Brassica carinata HOM05D009052 ORTHO05D011796 7.0e-10 70.1 73 53.4
C02p13590 Brassica napus HOM05D006136 ORTHO05D007244 2.0e-09 68.6 73 53.4
BolC2t07471H Brassica oleracea HOM05D006136 ORTHO05D007244 2.0e-09 68.6 73 53.4
MBI16_g40728_MAGBIO Magnolia biondii HOM05D006136 ORTHO05D007244 8.5e-08 63.2 73 45.2
Lsat_1_v5_gn_5_81880 Lactuca sativa HOM05D006136 ORTHO05D007244 1.5e-07 62.4 191 29.8
VMungo1309G2339 Vigna mungo HOM05D006136 ORTHO05D007244 9.4e-07 59.7 154 30.5
Cre14.g633400 Chlamydomonas reinhardtii HOM05D006136 ORTHO05D007244 2.1e-06 58.5 113 31.9
TPR.G24042 Trifolium pratense HOM05D006136 ORTHO05D007244 2.1e-06 58.5 70 47.1


User provided reference genes

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