Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002581 Camellia sinensis var. sinensis HOM05D003148 ORTHO05D003894 4.3e-253 877.5 429 100.0
Rhsim06G0215400 Rhododendron simsii HOM05D003148 ORTHO05D003894 9.7e-165 583.9 375 76.5
Actinidia09911 Actinidia chinensis HOM05D003148 ORTHO05D003894 1.2e-162 577.0 417 71.5
vmacro09733 Vaccinium macrocarpon HOM05D003148 ORTHO05D003894 6.5e-153 544.7 315 81.3
CSS0048264 Camellia sinensis var. sinensis HOM05D003148 ORTHO05D003894 7.5e-149 531.2 373 69.7
Actinidia35330 Actinidia chinensis HOM05D003148 ORTHO05D003894 8.3e-148 527.7 392 68.9
DCAR_022553 Daucus carota HOM05D003148 ORTHO05D003894 3.5e-146 522.3 394 67.0
TAR624G0080 Trochodendron aralioides HOM05D003148 ORTHO05D003894 1.9e-144 516.5 331 74.9
Rhsim04G0002300 Rhododendron simsii HOM05D003148 ORTHO05D003894 5.5e-144 515.0 351 71.5
Dinv40737 Davidia involucrata HOM05D003148 ORTHO05D003894 6.1e-143 511.5 331 75.2
Lj8A168T100 Lonicera japonica HOM05D003148 ORTHO05D003894 8.0e-143 511.1 386 67.4
Nitab4.5_0000397g0350 Nicotiana tabacum HOM05D003148 ORTHO05D003894 1.4e-142 510.4 345 72.5
Cc05_g13530 Coffea canephora HOM05D003148 ORTHO05D003894 2.3e-142 509.6 410 64.9
Hma1.2p1_0938F.1_g239220 Hydrangea macrophylla HOM05D003148 ORTHO05D003894 6.8e-142 508.1 394 66.5
TAR626G0663 Trochodendron aralioides HOM05D003148 ORTHO05D003894 2.6e-141 506.1 414 63.8
Sed0003151 Sechium edule HOM05D003148 ORTHO05D003894 4.4e-141 505.4 336 73.5
vmacro11740 Vaccinium macrocarpon HOM05D003148 ORTHO05D003894 1.4e-139 500.4 318 76.7
CiPaw.12G128200 Carya illinoinensis HOM05D003148 ORTHO05D003894 2.4e-139 499.6 390 65.1
Lsat_1_v5_gn_1_29100 Lactuca sativa HOM05D003148 ORTHO05D003894 2.4e-139 499.6 325 73.8
EL10Ac3g07232 Beta vulgaris HOM05D003148 ORTHO05D003894 3.1e-139 499.2 333 71.5
QL08p011843 Quercus lobata HOM05D003148 ORTHO05D003894 3.1e-139 499.2 366 68.9
RcHm_v2.0_Chr5g0038301 Rosa chinensis HOM05D003148 ORTHO05D003894 1.6e-138 496.9 385 64.7
MD11G1221900 Malus domestica HOM05D003148 ORTHO05D003894 7.8e-138 494.6 332 72.6
GSVIVG01014163001 Vitis vinifera HOM05D003148 ORTHO05D003894 1.0e-137 494.2 405 63.5
Cfa020382 Carpinus fangiana HOM05D003148 ORTHO05D003894 1.3e-137 493.8 361 68.7
Oeu062599.1 Olea europaea HOM05D003148 ORTHO05D003894 1.7e-137 493.4 322 74.8
Haze_09651 Corylus avellana HOM05D003148 ORTHO05D003894 2.3e-137 493.0 373 67.8
FAN16G3453 Fragaria x ananassa HOM05D003148 ORTHO05D003894 2.3e-137 493.0 385 64.7
Nn1g07107 Nelumbo nucifera HOM05D003148 ORTHO05D003894 2.9e-137 492.7 395 64.1
ClCG10G005550 Citrullus lanatus HOM05D003148 ORTHO05D003894 3.9e-137 492.3 423 60.5
Nitab4.5_0013016g0020 Nicotiana tabacum HOM05D003148 ORTHO05D003894 3.9e-137 492.3 333 72.4
Nitab4.5_0000622g0240 Nicotiana tabacum HOM05D003148 ORTHO05D003894 5.0e-137 491.9 333 72.4
CAN.G337.107 Capsicum annuum HOM05D003148 ORTHO05D003894 6.6e-137 491.5 340 70.6
RhsimUnG0252100 Rhododendron simsii HOM05D003148 ORTHO05D003894 6.6e-137 491.5 282 81.9
Sopen07g032480 Solanum pennellii HOM05D003148 ORTHO05D003894 6.6e-137 491.5 340 70.6
FAN21G1173 Fragaria x ananassa HOM05D003148 ORTHO05D003894 1.5e-136 490.3 385 63.9
Solyc07g064330.3 Solanum lycopersicum HOM05D003148 ORTHO05D003894 1.5e-136 490.3 356 68.0
SGA_v2.0_scaffold9G05063 Striga asiatica HOM05D003148 ORTHO05D003894 1.5e-136 490.3 330 72.1
PGSC0003DMG402013919 Solanum tuberosum HOM05D003148 ORTHO05D003894 1.9e-136 490.0 340 70.6
ECA246G3119 Erigeron canadensis HOM05D003148 ORTHO05D003894 7.3e-136 488.0 332 72.0
Lj1C869T19 Lonicera japonica HOM05D003148 ORTHO05D003894 7.3e-136 488.0 349 71.6
Oeu042923.1 Olea europaea HOM05D003148 ORTHO05D003894 1.6e-135 486.9 320 74.4
PGR083G0390 Punica granatum HOM05D003148 ORTHO05D003894 1.6e-135 486.9 390 62.1
Ciclev10007282m.g Citrus clementina HOM05D003148 ORTHO05D003894 2.1e-135 486.5 341 70.1
AUR62018343 Chenopodium quinoa HOM05D003148 ORTHO05D003894 2.8e-135 486.1 387 63.6
FvH4_3g22230 Fragaria vesca HOM05D003148 ORTHO05D003894 4.7e-135 485.3 385 63.9
FAN11G2520 Fragaria x ananassa HOM05D003148 ORTHO05D003894 4.7e-135 485.3 331 71.0
CsaV3_3G005270 Cucumis sativus L. HOM05D003148 ORTHO05D003894 6.1e-135 485.0 332 71.4
Manes.14G165664 Manihot esculenta HOM05D003148 ORTHO05D003894 1.0e-134 484.2 331 71.0
MSTRG.14430 Avicennia marina HOM05D003148 ORTHO05D003894 1.4e-134 483.8 331 72.5
Potri.001G421300 Populus trichocarpa HOM05D003148 ORTHO05D003894 1.4e-134 483.8 408 61.3
Hund19099 Selenicereus undatus HOM05D003148 ORTHO05D003894 1.4e-134 483.8 371 65.0
MSTRG.12966 Avicennia marina HOM05D003148 ORTHO05D003894 1.8e-134 483.4 410 61.2
Thecc.07G043600 Theobroma cacao HOM05D003148 ORTHO05D003894 4.0e-134 482.3 417 60.9
HanXRQChr05g0159091 Helianthus annuus HOM05D003148 ORTHO05D003894 8.9e-134 481.1 354 66.9
Prupe.4G209500 Prunus persica HOM05D003148 ORTHO05D003894 1.2e-133 480.7 395 63.5
Sc19g0008220 Simmondsia chinensis HOM05D003148 ORTHO05D003894 1.5e-133 480.3 373 66.0
CDE05G0870 Ceratophyllum demersum HOM05D003148 ORTHO05D003894 4.4e-133 478.8 370 65.4
MELO3C025395.2 Cucumis melo HOM05D003148 ORTHO05D003894 5.8e-133 478.4 333 70.3
Eucgr.F00964 Eucalyptus grandis HOM05D003148 ORTHO05D003894 9.8e-133 477.6 332 70.2
Potri.011G136900 Populus trichocarpa HOM05D003148 ORTHO05D003894 9.8e-133 477.6 337 69.1
Hund24589 Selenicereus undatus HOM05D003148 ORTHO05D003894 1.3e-132 477.2 330 70.0
COL.COLO4_09635 Corchorus olitorius HOM05D003148 ORTHO05D003894 2.9e-132 476.1 333 69.7
AL1G58530 Arabidopsis lyrata HOM05D003148 ORTHO05D003894 4.9e-132 475.3 387 60.2
Duzib213G0065 Durio zibethinus HOM05D003148 ORTHO05D003894 6.4e-132 474.9 334 70.1
Gorai.002G086900 Gossypium raimondii HOM05D003148 ORTHO05D003894 6.4e-132 474.9 374 63.9
MBI02_g28334_MAGBIO Magnolia biondii HOM05D003148 ORTHO05D003894 1.4e-131 473.8 339 67.6
A05p19930 Brassica napus HOM05D003148 ORTHO05D003894 2.4e-131 473.0 427 57.4
BraA05t20898Z Brassica rapa HOM05D003148 ORTHO05D003894 2.4e-131 473.0 427 57.4
Cfa020383 Carpinus fangiana HOM05D003148 ORTHO05D003894 2.4e-131 473.0 340 68.2
Gohir.A01G078100 Gossypium hirsutum HOM05D003148 ORTHO05D003894 3.2e-131 472.6 407 60.9
Sabra16G0286100 Salix brachista HOM05D003148 ORTHO05D003894 3.2e-131 472.6 391 61.9
Aa31LG10G3300 Aethionema arabicum HOM05D003148 ORTHO05D003894 4.1e-131 472.2 332 67.5
Gohir.D01G065200 Gossypium hirsutum HOM05D003148 ORTHO05D003894 4.1e-131 472.2 407 60.2
CARHR096300 Cardamine hirsuta HOM05D003148 ORTHO05D003894 5.4e-131 471.9 332 66.9
Thhalv10011195m.g Eutrema salsugineum HOM05D003148 ORTHO05D003894 5.4e-131 471.9 332 67.2
AT1G50840 Arabidopsis thaliana HOM05D003148 ORTHO05D003894 7.0e-131 471.5 387 59.9
Aqoxy3G04136 Aquilegia oxysepala HOM05D003148 ORTHO05D003894 1.2e-130 470.7 329 69.0
Sp1g37600 Schrenkiella parvula HOM05D003148 ORTHO05D003894 1.2e-130 470.7 332 67.5
BcaB02g11185 Brassica carinata HOM05D003148 ORTHO05D003894 3.5e-130 469.2 370 62.4
TWI38G0810 Tripterygium wilfordii HOM05D003148 ORTHO05D003894 3.5e-130 469.2 362 64.9
Atru.chr2.3280 Acer truncatum HOM05D003148 ORTHO05D003894 4.6e-130 468.8 395 61.8
C05p33280 Brassica napus HOM05D003148 ORTHO05D003894 6.0e-130 468.4 370 61.9
BolC5t32054H Brassica oleracea HOM05D003148 ORTHO05D003894 6.0e-130 468.4 370 61.9
CARHR040890 Cardamine hirsuta HOM05D003148 ORTHO05D003894 7.8e-130 468.0 423 56.3
Ah.13g076880 Amaranthus hybridus HOM05D001433 ORTHO05D005172 1.0e-129 467.6 392 62.2
Lalb_Chr04g0248571 Lupinus albus HOM05D003148 ORTHO05D003894 1.0e-129 467.6 336 69.9
Aqoxy1G03292 Aquilegia oxysepala HOM05D003148 ORTHO05D003894 1.3e-129 467.2 367 66.8
Peaxi162Scf00450g00842 Petunia axillaris HOM05D003148 ORTHO05D003894 1.3e-129 467.2 294 76.9
Medtr5g092100 Medicago truncatula HOM05D003148 ORTHO05D003894 2.3e-129 466.5 340 68.2
TPR.G16585 Trifolium pratense HOM05D003148 ORTHO05D003894 2.3e-129 466.5 339 69.0
Carub.0001s3979 Capsella rubella HOM05D003148 ORTHO05D003894 3.0e-129 466.1 390 60.8
PSO541G1561 Papaver somniferum HOM05D003148 ORTHO05D003894 3.9e-129 465.7 339 66.7
PSO675G7850 Papaver somniferum HOM05D003148 ORTHO05D003894 3.9e-129 465.7 339 66.7
Atru.chr6.8 Acer truncatum HOM05D003148 ORTHO05D003894 5.0e-129 465.3 341 67.7
BcaC05g27391 Brassica carinata HOM05D003148 ORTHO05D003894 6.6e-129 464.9 370 61.6
Ca_14812_v3 Cicer arietinum L. HOM05D003148 ORTHO05D003894 6.6e-129 464.9 335 69.6
Sp3g18540 Schrenkiella parvula HOM05D003148 ORTHO05D003894 2.5e-128 463.0 332 65.7
arahy.Tifrunner.gnm1.ann1.FV4ICK Arachis hypogaea HOM05D003148 ORTHO05D003894 4.3e-128 462.2 348 66.7
Medtr3g050140 Medicago truncatula HOM05D003148 ORTHO05D003894 4.3e-128 462.2 335 70.1
Glyma.14G025300 Glycine max HOM05D003148 ORTHO05D003894 5.6e-128 461.8 336 69.0
Ca_06307_v3 Cicer arietinum L. HOM05D003148 ORTHO05D003894 9.5e-128 461.1 344 67.2
arahy.Tifrunner.gnm1.ann1.5UV8SN Arachis hypogaea HOM05D003148 ORTHO05D003894 1.2e-127 460.7 336 68.2
Medtr3g050110 Medicago truncatula HOM05D003148 ORTHO05D003894 1.2e-127 460.7 335 69.6
THA.LOC104817879 Tarenaya hassleriana HOM05D003148 ORTHO05D003894 1.2e-127 460.7 335 65.7
Lj4g0014990 Lotus japonicus HOM05D003148 ORTHO05D003894 1.6e-127 460.3 405 61.2
AUR62030324 Chenopodium quinoa HOM05D003148 ORTHO05D003894 2.1e-127 459.9 321 70.1
Psat5g183240 Pisum sativum HOM05D003148 ORTHO05D003894 2.8e-127 459.5 335 69.9
BolC5t33096H Brassica oleracea HOM05D003148 ORTHO05D003894 3.6e-127 459.1 357 63.0
A05p28320 Brassica napus HOM05D003148 ORTHO05D003894 8.0e-127 458.0 332 65.7
BraA05t21714Z Brassica rapa HOM05D003148 ORTHO05D003894 8.0e-127 458.0 332 65.7
VMungo0647G1963 Vigna mungo HOM05D003148 ORTHO05D003894 2.3e-126 456.4 357 64.1
ATR0752G224 Amborella trichopoda HOM05D003148 ORTHO05D003894 3.1e-126 456.1 335 65.7
C05p43810 Brassica napus HOM05D003148 ORTHO05D003894 3.1e-126 456.1 357 62.7
Glyma.02G289700 Glycine max HOM05D003148 ORTHO05D003894 3.1e-126 456.1 415 59.0
Aa31LG8G7340 Aethionema arabicum HOM05D003148 ORTHO05D003894 1.5e-125 453.8 335 65.4
Psat2g015200 Pisum sativum HOM05D003148 ORTHO05D003894 2.0e-125 453.4 336 66.7
Thhalv10019969m.g Eutrema salsugineum HOM05D003148 ORTHO05D003894 4.4e-125 452.2 332 65.4
TPR.G29117 Trifolium pratense HOM05D003148 ORTHO05D003894 5.8e-125 451.8 402 60.2
AL3G34360 Arabidopsis lyrata HOM05D003148 ORTHO05D003894 9.8e-125 451.1 387 58.4
Carub.0003s2050 Capsella rubella HOM05D003148 ORTHO05D003894 9.8e-125 451.1 332 65.1
Migut.H01840 Erythranthe guttata HOM05D003148 ORTHO05D003894 9.8e-125 451.1 361 61.8
Lj6g0019529 Lotus japonicus HOM05D003148 ORTHO05D003894 9.8e-125 451.1 395 59.7
Phvul.008G265700 Phaseolus vulgaris HOM05D003148 ORTHO05D003894 9.8e-125 451.1 333 67.9
AT3G20540 Arabidopsis thaliana HOM05D003148 ORTHO05D003894 1.7e-124 450.3 403 57.3
Sabra11G0122800 Salix brachista HOM05D003148 ORTHO05D003894 1.9e-123 446.8 494 50.2
Glyma.08G313400 Glycine max HOM05D003148 ORTHO05D003894 3.2e-123 446.0 336 65.8
Phvul.006G039400 Phaseolus vulgaris HOM05D003148 ORTHO05D003894 5.4e-123 445.3 348 65.5
Cpa.g.sc97.33 Carica papaya HOM05D003148 ORTHO05D003894 9.2e-123 444.5 312 69.2
Os08g0175300 Oryza sativa ssp. japonica HOM05D003148 ORTHO05D003894 4.6e-122 442.2 331 66.5
arahy.Tifrunner.gnm1.ann1.SAW44B Arachis hypogaea HOM05D003148 ORTHO05D003894 7.8e-122 441.4 366 62.8
Os08g0175600 Oryza sativa ssp. japonica HOM05D003148 ORTHO05D003894 1.3e-121 440.7 327 66.4
Lalb_Chr18g0049911 Lupinus albus HOM05D003148 ORTHO05D003894 2.3e-121 439.9 404 58.7
Zm00001eb414740 Zea mays HOM05D003148 ORTHO05D003894 1.9e-120 436.8 332 63.9
arahy.Tifrunner.gnm1.ann1.IVZB0M Arachis hypogaea HOM05D003148 ORTHO05D003894 4.3e-120 435.6 365 62.2
Haze_09649 Corylus avellana HOM05D003148 ORTHO05D003894 6.2e-119 431.8 288 72.6
Zm00001eb431790 Zea mays HOM05D003148 ORTHO05D003894 1.1e-118 431.0 332 64.8
PSO017G6339 Papaver somniferum HOM05D003148 ORTHO05D003894 2.0e-117 426.8 375 58.7
PSO478G0587 Papaver somniferum HOM05D003148 ORTHO05D003894 8.6e-113 411.4 372 57.5
Lj6A79G4 Lonicera japonica HOM05D003148 ORTHO05D003894 1.1e-112 411.0 292 67.5
SEGI_28554 Sequoiadendron giganteum HOM05D003148 ORTHO05D003894 1.0e-105 387.9 325 58.2
Pp3c14_14550 Physcomitrium patens HOM05D003148 ORTHO05D003894 5.4e-99 365.5 416 48.8
SHI31845 Sapria himalayana HOM05D003148 ORTHO05D003894 1.6e-98 364.0 372 53.5
CBR_g50948 Chara braunii HOM05D003148 ORTHO05D003894 1.5e-93 347.4 327 53.8
Pp3c8_21620 Physcomitrium patens HOM05D003148 ORTHO05D003894 2.6e-93 346.7 330 52.4
Pp3c24_16390 Physcomitrium patens HOM05D003148 ORTHO05D003894 9.9e-93 344.7 328 52.1
SMO356G0432 Selaginella moellendorffii HOM05D003148 ORTHO05D003894 6.4e-92 342.0 319 53.9
AagrBONN_evm.TU.Sc2ySwM_228.5326 Anthoceros agrestis HOM05D003148 ORTHO05D003894 7.1e-91 338.6 351 51.3
Mapoly0039s0093 Marchantia polymorpha HOM05D003148 ORTHO05D003894 3.7e-87 326.2 328 51.5
unitig_52.g17354 Utricularia gibba HOM05D003148 ORTHO05D003894 1.1e-86 324.7 323 53.3
Duzib170G0320 Durio zibethinus HOM05D003148 ORTHO05D003894 9.0e-86 321.6 219 73.1
CDE01G0619 Ceratophyllum demersum HOM05D003148 ORTHO05D003894 1.9e-80 303.9 451 41.2
CiPaw.11G187400 Carya illinoinensis HOM05D003148 ORTHO05D003894 3.8e-76 289.7 201 72.1
MCO10G006 Micromonas commoda HOM05D003148 ORTHO05D003894 9.7e-72 275.0 368 42.4
HPP92_009351 Vanilla planifolia HOM05D003148 ORTHO05D003894 1.6e-71 274.2 251 59.8
Eucgr.F00930 Eucalyptus grandis HOM05D003148 ORTHO05D003894 4.1e-70 269.6 247 57.1
Glyma.19G036300 Glycine max HOM05D003148 ORTHO05D003894 1.2e-69 268.1 201 68.2
SEGI_31566 Sequoiadendron giganteum HOM05D003148 ORTHO05D003894 3.3e-56 223.4 214 52.8
PRCOL_00004837 Prasinoderma coloniale HOM05D003148 ORTHO05D003894 9.7e-56 221.9 328 39.3
TAR624G0017 Trochodendron aralioides HOM05D003148 ORTHO05D026836 8.8e-49 198.7 131 73.3
PRCOL_00004766 Prasinoderma coloniale HOM05D003148 ORTHO05D003894 1.2e-45 188.3 336 33.6
Lsat_1_v5_gn_6_61201 Lactuca sativa HOM05D003148 ORTHO05D026836 1.6e-45 188.0 132 70.5
Lj6A83T13 Lonicera japonica HOM05D003148 ORTHO05D003894 1.3e-44 184.9 203 47.8
Os04g0637400 Oryza sativa ssp. japonica HOM05D003148 ORTHO05D003894 1.7e-36 157.9 106 68.9
CiPaw.11G187500 Carya illinoinensis HOM05D003148 ORTHO05D003894 3.6e-34 150.2 173 51.4
Cre08.g363837 Chlamydomonas reinhardtii HOM05D003148 ORTHO05D003894 3.6e-34 150.2 485 26.2
Ciclev10008272m.g Citrus clementina HOM05D003148 ORTHO05D003894 1.8e-33 147.9 107 63.6
HPP92_009350 Vanilla planifolia HOM05D003148 ORTHO05D003894 5.4e-30 136.3 82 75.6
vmacro11739 Vaccinium macrocarpon HOM05D003148 ORTHO05D426532 2.4e-22 110.9 139 49.6
Lju760A7G19 Lonicera japonica HOM05D003148 ORTHO05D026836 8.0e-18 95.9 83 54.2
AL3G41470 Arabidopsis lyrata HOM05D003148 ORTHO05D026836 8.9e-17 92.4 60 73.3
FAN25G2336 Fragaria x ananassa HOM05D003148 ORTHO05D003894 3.4e-16 90.5 66 63.6
COL.COLO4_09803 Corchorus olitorius HOM05D021535 ORTHO05D000431 5.6e-11 73.2 83 48.2
Lju760A7G20 Lonicera japonica HOM05D003148 ORTHO05D003894 2.3e-09 67.8 47 61.7


User provided reference genes

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