Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0002284 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 2608.9 1277 100.0
CSS0018271 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 2553.9 1291 97.5
Actinidia15577 Actinidia chinensis HOM05D004874 ORTHO05D006796 0.0e+00 2158.6 1286 82.6
Dinv19497 Davidia involucrata HOM05D004874 ORTHO05D006796 0.0e+00 2125.1 1289 82.1
Rhsim10G0151300 Rhododendron simsii HOM05D004874 ORTHO05D006796 0.0e+00 2105.1 1288 80.8
GSVIVG01022217001 Vitis vinifera HOM05D004874 ORTHO05D006796 0.0e+00 1971.1 1289 75.6
Ciclev10024728m.g Citrus clementina HOM05D004874 ORTHO05D006796 0.0e+00 1960.3 1287 74.9
Thecc.01G111200 Theobroma cacao HOM05D004874 ORTHO05D006796 0.0e+00 1947.9 1289 73.7
Atru.chr4.387 Acer truncatum HOM05D004874 ORTHO05D006796 0.0e+00 1940.2 1287 74.4
Gorai.011G111800 Gossypium raimondii HOM05D004874 ORTHO05D006796 0.0e+00 1927.9 1289 73.2
Manes.13G077640 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1926.4 1290 73.4
Gohir.D10G102100 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1921.4 1289 73.1
Potri.005G083800 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1916.7 1287 73.1
Gohir.A10G086600 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1914.8 1289 72.8
QL06p032401 Quercus lobata HOM05D004874 ORTHO05D006796 0.0e+00 1910.6 1284 72.6
CANSAT01G0647 Cannabis sativa HOM05D004874 ORTHO05D006796 0.0e+00 1903.3 1287 71.6
Sabra05G0068900 Salix brachista HOM05D004874 ORTHO05D006796 0.0e+00 1899.0 1294 72.1
Prupe.6G174100 Prunus persica HOM05D004874 ORTHO05D006796 0.0e+00 1897.9 1287 73.2
MD15G1333600 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1884.8 1287 72.3
Potri.007G081900 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1882.5 1285 72.1
Oeu028379.4 Olea europaea HOM05D004874 ORTHO05D006796 0.0e+00 1880.5 1386 67.7
Peaxi162Scf00323g00112 Petunia axillaris HOM05D004874 ORTHO05D006796 0.0e+00 1880.1 1254 74.2
TWI74G1507 Tripterygium wilfordii HOM05D004874 ORTHO05D006796 0.0e+00 1879.8 1288 71.0
Cc07_g16070 Coffea canephora HOM05D004874 ORTHO05D006796 0.0e+00 1875.1 1287 72.3
Glyma.06G145900 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1874.8 1283 70.3
CAN.G1728.1 Capsicum annuum HOM05D004874 ORTHO05D006796 0.0e+00 1872.8 1284 72.4
Phvul.009G140100 Phaseolus vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1872.4 1284 70.1
Sopen04g023580 Solanum pennellii HOM05D004874 ORTHO05D006796 0.0e+00 1860.5 1288 71.8
Glyma.04G220000 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1859.7 1283 70.0
Solyc04g054140.4 Solanum lycopersicum HOM05D004874 ORTHO05D006796 0.0e+00 1857.8 1293 71.7
RcHm_v2.0_Chr2g0116231 Rosa chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1857.4 1286 70.5
Nn5g28922 Nelumbo nucifera HOM05D004874 ORTHO05D006796 0.0e+00 1856.6 1287 71.0
VMungo1309G2704 Vigna mungo HOM05D004874 ORTHO05D006796 0.0e+00 1852.0 1285 69.1
ECA238G3208 Erigeron canadensis HOM05D004874 ORTHO05D006796 0.0e+00 1844.3 1289 69.4
FvH4_1g22150 Fragaria vesca HOM05D004874 ORTHO05D006796 0.0e+00 1839.7 1289 70.1
Haze_25029 Corylus avellana HOM05D004874 ORTHO05D006796 0.0e+00 1835.8 1252 72.7
HanXRQChr14g0446191 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1834.7 1286 69.3
Lj1g0000337 Lotus japonicus HOM05D004874 ORTHO05D006796 0.0e+00 1830.8 1286 68.8
FAN23G3027 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1823.9 1289 69.7
FAN28G2703 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1823.9 1289 69.7
FAN26G2351 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1823.5 1289 69.9
Ca_16889_v3 Cicer arietinum L. HOM05D004874 ORTHO05D006796 0.0e+00 1820.8 1286 69.2
Lsat_1_v5_gn_2_65401 Lactuca sativa HOM05D004874 ORTHO05D006796 0.0e+00 1820.1 1289 69.4
Medtr3g094770 Medicago truncatula HOM05D004874 ORTHO05D006796 0.0e+00 1818.9 1286 68.9
Migut.H02425 Erythranthe guttata HOM05D004874 ORTHO05D006796 0.0e+00 1817.0 1292 70.6
PSO675G8458 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1816.2 1285 70.0
FAN19G0866 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1813.1 1315 68.5
PSO541G0735 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1812.7 1285 69.5
CsaV3_6G042450 Cucumis sativus L. HOM05D004874 ORTHO05D006796 0.0e+00 1806.2 1288 68.8
TPR.G23744 Trifolium pratense HOM05D004874 ORTHO05D006796 0.0e+00 1805.8 1285 68.1
HanXRQChr10g0295251 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1805.0 1286 68.4
Psat5g065960 Pisum sativum HOM05D004874 ORTHO05D006796 0.0e+00 1802.7 1285 67.7
Manes.12G141800 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1800.0 1285 68.9
ClCG01G016180 Citrullus lanatus HOM05D004874 ORTHO05D006796 0.0e+00 1793.9 1286 68.5
Aqoxy6G00493 Aquilegia oxysepala HOM05D004874 ORTHO05D006796 0.0e+00 1791.5 1300 68.2
Lalb_Chr11g0068041 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1786.2 1287 67.6
Eucgr.H04838 Eucalyptus grandis HOM05D004874 ORTHO05D006796 0.0e+00 1781.5 1280 69.0
arahy.Tifrunner.gnm1.ann1.ZQBN5H Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1780.4 1285 67.7
arahy.Tifrunner.gnm1.ann1.M2IALY Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1776.1 1285 67.5
EL10Ac6g14746 Beta vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1745.7 1369 62.8
THA.LOC104804146 Tarenaya hassleriana HOM05D004874 ORTHO05D006796 0.0e+00 1743.4 1279 67.4
DCAR_014257 Daucus carota HOM05D004874 ORTHO05D006796 0.0e+00 1739.9 1269 68.8
SGA_v2.0_scaffold2G01299 Striga asiatica HOM05D004874 ORTHO05D006796 0.0e+00 1722.2 1376 64.2
AUR62003312 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1720.7 1291 64.8
SalBow6G4347 Salvia bowleyana HOM05D004874 ORTHO05D006796 0.0e+00 1719.9 1179 71.8
AUR62016271 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1713.0 1291 64.7
Carub.0004s0115 Capsella rubella HOM05D004874 ORTHO05D006796 0.0e+00 1700.3 1285 65.2
CARHR113090 Cardamine hirsuta HOM05D004874 ORTHO05D006796 0.0e+00 1698.3 1281 65.6
Sed0015455 Sechium edule HOM05D004874 ORTHO05D006796 0.0e+00 1698.3 1286 65.5
AL4G11330 Arabidopsis lyrata HOM05D004874 ORTHO05D006796 0.0e+00 1689.1 1280 65.2
AT2G22010 Arabidopsis thaliana HOM05D004874 ORTHO05D006796 0.0e+00 1688.7 1283 65.2
BcaC07g41106 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1687.9 1284 65.4
TAR628G0415 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1686.4 1204 70.9
PGR102G1404 Punica granatum HOM05D004874 ORTHO05D006796 0.0e+00 1684.8 1283 65.8
Sp4g01070 Schrenkiella parvula HOM05D004874 ORTHO05D006796 0.0e+00 1684.8 1280 65.2
C08p41080 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1683.7 1288 65.1
Hund19660 Selenicereus undatus HOM05D004874 ORTHO05D006796 0.0e+00 1681.4 1237 67.3
BolC8t51674H Brassica oleracea HOM05D004874 ORTHO05D006796 0.0e+00 1677.1 1294 64.8
A09p57840 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1675.6 1286 65.2
MELO3C007488.2 Cucumis melo HOM05D004874 ORTHO05D006796 0.0e+00 1674.8 1297 64.7
BcaB08g35028 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1674.1 1283 64.8
BraA09t41177Z Brassica rapa HOM05D004874 ORTHO05D006796 0.0e+00 1662.9 1292 64.9
Lalb_Chr13g0296191 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1662.9 1285 63.6
Thhalv10000015m.g Eutrema salsugineum HOM05D004874 ORTHO05D006796 0.0e+00 1656.3 1277 64.9
ATR0564G436 Amborella trichopoda HOM05D004874 ORTHO05D006796 0.0e+00 1632.8 1281 63.1
Nitab4.5_0000156g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 0.0e+00 1616.7 1042 76.3
TAR376G0110 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1595.1 1042 74.9
Aa31LG7G14640 Aethionema arabicum HOM05D004874 ORTHO05D006796 0.0e+00 1576.6 1283 62.5
PGSC0003DMG400012951 Solanum tuberosum HOM05D004874 ORTHO05D006796 0.0e+00 1555.8 1048 73.3
MD01G1017400 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1515.7 1046 72.3
CDE07G0820 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1486.1 1282 58.6
Zm00001eb328050 Zea mays HOM05D004874 ORTHO05D006796 0.0e+00 1485.3 1276 58.2
Duzib147G0760 Durio zibethinus HOM05D004874 ORTHO05D006796 0.0e+00 1464.5 1276 59.9
SEGI_33214 Sequoiadendron giganteum HOM05D004874 ORTHO05D006796 0.0e+00 1387.1 1283 55.3
unitig_899.g14600 Utricularia gibba HOM05D004874 ORTHO05D006796 0.0e+00 1378.2 1188 60.1
COL.COLO4_11028 Corchorus olitorius HOM05D004874 ORTHO05D006796 0.0e+00 1321.6 1288 55.6
CDE04G1796 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1319.7 1223 55.5
Lj2C562G3 Lonicera japonica HOM05D004874 ORTHO05D006796 0.0e+00 1314.7 831 77.4
vmacro12908 Vaccinium macrocarpon HOM05D004874 ORTHO05D006796 0.0e+00 1250.7 777 78.4
FAN01G2715 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1214.1 940 64.6
CiPaw.04G092800 Carya illinoinensis HOM05D004874 ORTHO05D006796 0.0e+00 1199.5 819 74.0
Ah.02g124400 Amaranthus hybridus HOM05D004874 ORTHO05D006796 0.0e+00 1182.2 877 64.9
Cpa.g.sc196.7 Carica papaya HOM05D004874 ORTHO05D006796 0.0e+00 1174.8 829 68.9
FAN06G3019 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1140.9 941 62.2
Oeu030684.1 Olea europaea HOM05D004874 ORTHO05D006796 0.0e+00 1140.9 772 72.7
MBI02_g13022_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 0.0e+00 1126.3 835 66.5
Mapoly0047s0138 Marchantia polymorpha HOM05D004874 ORTHO05D006796 0.0e+00 1123.6 1338 47.5
SMO143G0116 Selaginella moellendorffii HOM05D004874 ORTHO05D006796 0.0e+00 1094.7 1201 48.3
Pp3c2_2760 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1090.1 1326 46.0
Pp3c1_33900 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1085.1 1303 46.0
FAN06G4447 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1078.5 941 59.7
Pp3c17_14550 Physcomitrium patens HOM05D004874 ORTHO05D006796 2.1e-303 1046.2 1337 44.8
MSTRG.2539 Avicennia marina HOM05D004874 ORTHO05D006796 3.3e-301 1038.9 772 68.4
AagrBONN_evm.TU.Sc2ySwM_228.911 Anthoceros agrestis HOM05D004874 ORTHO05D006796 7.6e-298 1027.7 1150 48.8
FAN10G0201 Fragaria x ananassa HOM05D004874 ORTHO05D006796 1.5e-290 1003.4 691 70.9
HPP92_016848 Vanilla planifolia HOM05D004874 ORTHO05D006796 5.2e-230 802.4 634 63.4
CBR_g4334 Chara braunii HOM05D004874 ORTHO05D006796 7.5e-229 798.5 1462 35.5
FvH4_7g04730 Fragaria vesca HOM05D004874 ORTHO05D006796 4.9e-220 769.2 550 68.0
Oeu030685.1 Olea europaea HOM05D004874 ORTHO05D006796 5.0e-217 759.2 501 71.7
HPP92_016847 Vanilla planifolia HOM05D004874 ORTHO05D006796 2.0e-205 720.7 612 55.9
FAN03G2613 Fragaria x ananassa HOM05D004874 ORTHO05D006796 8.3e-204 715.3 501 70.5
Lj2A562T49 Lonicera japonica HOM05D004874 ORTHO05D006796 4.6e-202 709.5 480 74.6
Cc07_g14920 Coffea canephora HOM05D004874 ORTHO05D006796 2.6e-141 507.7 408 65.2
MBI02_g44126_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 7.9e-138 496.1 373 69.4
Cpa.g.sc196.6 Carica papaya HOM05D004874 ORTHO05D006796 7.7e-133 479.6 332 71.7
Ah.02g124390 Amaranthus hybridus HOM05D004874 ORTHO05D006796 3.3e-128 464.2 345 67.8
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 1.7e-100 372.1 1361 26.6
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 1.2e-90 339.3 1222 25.4
Os07g0626900 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 3.4e-80 304.7 276 57.2
Sabra07G0068700 Salix brachista HOM05D004874 ORTHO05D006796 1.0e-52 213.4 308 43.2
Nitab4.5_0010573g0010 Nicotiana tabacum HOM05D004874 ORTHO05D006796 2.1e-50 205.7 160 63.8
FvH4_7g04731 Fragaria vesca HOM05D004874 ORTHO05D006796 4.0e-49 201.4 126 76.2
Solyc05g055570.3 Solanum lycopersicum HOM05D004874 ORTHO05D014502 1.0e-31 143.7 101 73.3
HanXRQChr11g0324541 Helianthus annuus HOM05D004874 ORTHO05D006796 2.8e-26 125.6 78 71.8
Zm00001eb137300 Zea mays HOM05D004874 ORTHO05D006796 8.5e-15 87.4 68 58.8
Nitab4.5_0000904g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 5.5e-14 84.7 46 87.0
unitig_899.g14599 Utricularia gibba HOM05D002815 ORTHO05D025745 6.1e-13 81.3 71 57.7
BcaC09g48952 Brassica carinata HOM05D004874 ORTHO05D014502 3.3e-11 75.5 53 67.9
HanXRQChr11g0341101 Helianthus annuus HOM05D004874 ORTHO05D006796 4.4e-11 75.1 50 68.0
BcaC06g36156 Brassica carinata HOM05D004874 ORTHO05D014502 7.4e-11 74.3 53 66.0
HanXRQChr12g0385291 Helianthus annuus HOM05D004874 ORTHO05D006796 6.3e-10 71.2 39 84.6
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 1.1e-09 70.5 95 37.9
MCO11G679 Micromonas commoda HOM05D000032 ORTHO05D028824 1.4e-09 70.1 151 28.5
BcaC04g21885 Brassica carinata HOM05D004874 ORTHO05D014502 1.8e-09 69.7 56 58.9
C07p07140 Brassica napus HOM05D004874 ORTHO05D014502 1.6e-08 66.6 46 67.4
A01p36370 Brassica napus HOM05D004874 ORTHO05D014502 2.6e-08 65.9 46 67.4
A02p42430 Brassica napus HOM05D004874 ORTHO05D014502 2.6e-08 65.9 46 67.4
C01p44130 Brassica napus HOM05D004874 ORTHO05D014502 2.6e-08 65.9 46 67.4
BraA01t04208Z Brassica rapa HOM05D004874 ORTHO05D014502 2.6e-08 65.9 46 67.4
BraA02t09174Z Brassica rapa HOM05D004874 ORTHO05D014502 2.6e-08 65.9 46 67.4
C09p26200 Brassica napus HOM05D004874 ORTHO05D014502 3.5e-08 65.5 46 67.4
BolC9t55523H Brassica oleracea HOM05D004874 ORTHO05D014502 3.5e-08 65.5 46 67.4
BolC7t41133H Brassica oleracea HOM05D004874 ORTHO05D014502 5.9e-08 64.7 46 65.2
Zm00001eb182000 Zea mays HOM05D003906 ORTHO05D004776 5.9e-08 64.7 118 33.1
Cre09.g387801 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 1.3e-07 63.5 135 33.3
Os03g0428000 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 1.3e-07 63.5 78 46.2
PRCOL_00002342 Prasinoderma coloniale HOM05D003906 ORTHO05D004776 1.3e-07 63.5 94 39.4
Cre01.g007150 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 2.2e-07 62.8 96 37.5
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 1.5e-06 60.1 187 30.5
CBR_g30766 Chara braunii HOM05D000019 ORTHO05D000048 1.9e-06 59.7 88 33.0
Os02g0556600 Oryza sativa ssp. japonica HOM05D003906 ORTHO05D004776 7.2e-06 57.8 118 31.4
Zm00001eb243840 Zea mays HOM05D003906 ORTHO05D004776 7.2e-06 57.8 118 30.5


User provided reference genes

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