Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_32909 Corchorus olitorius HOM05D003203 ORTHO05D003526 6.6e-60 233.8 115 100.0
COL.COLO4_25248 Corchorus olitorius HOM05D003203 ORTHO05D003526 7.3e-59 230.3 115 98.3
Duzib168G0563 Durio zibethinus HOM05D003203 ORTHO05D003526 1.5e-51 206.1 115 86.1
Gohir.D05G077500 Gossypium hirsutum HOM05D003203 ORTHO05D003526 6.9e-49 197.2 115 80.0
Gorai.009G078900 Gossypium raimondii HOM05D003203 ORTHO05D003526 6.9e-49 197.2 115 80.0
Gohir.A05G074700 Gossypium hirsutum HOM05D003203 ORTHO05D003526 9.0e-49 196.8 115 80.0
Thecc.09G260300 Theobroma cacao HOM05D003203 ORTHO05D003526 7.6e-48 193.7 115 82.6
Ciclev10027702m.g Citrus clementina HOM05D003203 ORTHO05D003526 1.3e-47 193.0 115 80.0
Manes.11G141000 Manihot esculenta HOM05D003203 ORTHO05D003526 1.7e-47 192.6 115 80.0
TWI31G0332 Tripterygium wilfordii HOM05D003203 ORTHO05D003526 1.7e-47 192.6 113 78.8
Atru.chr3.3692 Acer truncatum HOM05D003203 ORTHO05D003526 2.9e-47 191.8 115 77.4
GSVIVG01025133001 Vitis vinifera HOM05D003203 ORTHO05D003526 4.2e-46 188.0 115 76.5
Nn2g10680 Nelumbo nucifera HOM05D003203 ORTHO05D003526 7.1e-46 187.2 115 75.7
Aqoxy4G03208 Aquilegia oxysepala HOM05D003203 ORTHO05D003526 1.2e-45 186.4 115 75.7
Cpa.g.sc139.68 Carica papaya HOM05D003203 ORTHO05D003526 4.6e-45 184.5 115 74.8
Cfa011365 Carpinus fangiana HOM05D003203 ORTHO05D003526 6.0e-45 184.1 115 75.7
PGR102G2647 Punica granatum HOM05D003203 ORTHO05D003526 6.0e-45 184.1 115 73.0
QL01p037166 Quercus lobata HOM05D003203 ORTHO05D003526 6.0e-45 184.1 110 76.4
CSS0047004 Camellia sinensis var. sinensis HOM05D003203 ORTHO05D003526 1.3e-44 183.0 115 73.9
Haze_23916 Corylus avellana HOM05D003203 ORTHO05D003526 2.3e-44 182.2 115 74.8
Eucgr.B02467 Eucalyptus grandis HOM05D003203 ORTHO05D003526 3.9e-44 181.4 115 73.9
FvH4_3g33360 Fragaria vesca HOM05D003203 ORTHO05D003526 5.1e-44 181.0 115 71.3
FAN11G3892 Fragaria x ananassa HOM05D003203 ORTHO05D003526 5.1e-44 181.0 115 71.3
CAN.G553.12 Capsicum annuum HOM05D003203 ORTHO05D003526 6.6e-44 180.6 115 70.4
FAN17G1794 Fragaria x ananassa HOM05D003203 ORTHO05D003526 6.6e-44 180.6 115 70.4
RcHm_v2.0_Chr5g0060751 Rosa chinensis HOM05D003203 ORTHO05D003526 8.7e-44 180.3 115 71.3
RcHm_v2.0_Chr4g0389641 Rosa chinensis HOM05D003203 ORTHO05D003526 1.1e-43 179.9 115 70.4
Actinidia15612 Actinidia chinensis HOM05D003203 ORTHO05D003526 1.5e-43 179.5 113 70.8
Aqoxy3G02870 Aquilegia oxysepala HOM05D003203 ORTHO05D003526 1.5e-43 179.5 115 73.0
vmacro14071 Vaccinium macrocarpon HOM05D003203 ORTHO05D003526 1.5e-43 179.5 115 70.4
CiPaw.13G106900 Carya illinoinensis HOM05D003203 ORTHO05D003526 1.9e-43 179.1 115 73.9
FAN12G0401 Fragaria x ananassa HOM05D003203 ORTHO05D003526 1.9e-43 179.1 115 69.6
FAN21G1129 Fragaria x ananassa HOM05D003203 ORTHO05D003526 1.9e-43 179.1 115 70.4
TAR636G0568 Trochodendron aralioides HOM05D003203 ORTHO05D003526 2.5e-43 178.7 115 73.0
Peaxi162Scf00389g00932 Petunia axillaris HOM05D003203 ORTHO05D003526 3.3e-43 178.3 115 69.6
Sabra16G0090500 Salix brachista HOM05D003203 ORTHO05D003526 3.3e-43 178.3 115 73.0
FvH4_4g02320 Fragaria vesca HOM05D003203 ORTHO05D003526 4.3e-43 177.9 115 68.7
FAN22G0069 Fragaria x ananassa HOM05D003203 ORTHO05D003526 5.6e-43 177.6 115 68.7
Hma1.2p1_0559F.1_g178620 Hydrangea macrophylla HOM05D003203 ORTHO05D003526 7.3e-43 177.2 115 73.0
Nitab4.5_0002129g0110 Nicotiana tabacum HOM05D003203 ORTHO05D003526 9.6e-43 176.8 114 70.2
Dinv32789 Davidia involucrata HOM05D003203 ORTHO05D003526 1.3e-42 176.4 115 72.2
FAN16G3448 Fragaria x ananassa HOM05D003203 ORTHO05D003526 1.3e-42 176.4 115 69.6
Potri.016G083100 Populus trichocarpa HOM05D003203 ORTHO05D003526 1.3e-42 176.4 115 71.3
CANSAT54G1869 Cannabis sativa HOM05D003203 ORTHO05D003526 1.6e-42 176.0 111 73.0
CAN.G352.39 Capsicum annuum HOM05D003203 ORTHO05D003526 1.6e-42 176.0 115 67.8
Lj2A1035T51 Lonicera japonica HOM05D003203 ORTHO05D003526 2.1e-42 175.6 115 69.6
Prupe.6G094700 Prunus persica HOM05D003203 ORTHO05D003526 1.1e-41 173.3 115 70.4
VMungo1127G1096 Vigna mungo HOM05D003203 ORTHO05D003526 1.1e-41 173.3 115 71.3
Glyma.11G152960 Glycine max HOM05D003203 ORTHO05D003526 1.8e-41 172.6 115 71.3
Lj1C185T11 Lonicera japonica HOM05D003203 ORTHO05D003526 1.8e-41 172.6 115 67.8
Rhsim01G0220300 Rhododendron simsii HOM05D003203 ORTHO05D003526 1.8e-41 172.6 115 68.7
Thhalv10006605m.g Eutrema salsugineum HOM05D003203 ORTHO05D003526 2.4e-41 172.2 115 69.6
Lalb_Chr03g0027111 Lupinus albus HOM05D003203 ORTHO05D003526 2.4e-41 172.2 111 72.1
Psat7g223280 Pisum sativum HOM05D003203 ORTHO05D003526 2.4e-41 172.2 115 70.4
Ca_19241_v3 Cicer arietinum L. HOM05D003203 ORTHO05D003526 3.1e-41 171.8 115 70.4
PGSC0003DMG400027376 Solanum tuberosum HOM05D003203 ORTHO05D003526 4.0e-41 171.4 115 66.1
Cc01_g11550 Coffea canephora HOM05D003203 ORTHO05D003526 5.3e-41 171.0 115 68.7
DCAR_006042 Daucus carota HOM05D003203 ORTHO05D003526 5.3e-41 171.0 115 67.0
Nitab4.5_0001802g0120 Nicotiana tabacum HOM05D003203 ORTHO05D003526 5.3e-41 171.0 114 65.8
Oeu005910.3 Olea europaea HOM05D003203 ORTHO05D003526 5.3e-41 171.0 115 67.8
Lj3g0012673 Lotus japonicus HOM05D003203 ORTHO05D003526 6.9e-41 170.6 115 71.3
Lj3g0020808 Lotus japonicus HOM05D003203 ORTHO05D003526 6.9e-41 170.6 115 71.3
Sopen11g030070 Solanum pennellii HOM05D003203 ORTHO05D003526 6.9e-41 170.6 115 67.0
A09p66110 Brassica napus HOM05D003203 ORTHO05D003526 1.2e-40 169.9 115 68.7
BraA09t41949Z Brassica rapa HOM05D003203 ORTHO05D003526 1.2e-40 169.9 115 68.7
THA.LOC104815752 Tarenaya hassleriana HOM05D003203 ORTHO05D003526 1.2e-40 169.9 115 70.4
MSTRG.21144 Avicennia marina HOM05D003203 ORTHO05D003526 1.5e-40 169.5 115 66.1
BcaC07g41968 Brassica carinata HOM05D003203 ORTHO05D003526 1.5e-40 169.5 115 68.7
C08p50260 Brassica napus HOM05D003203 ORTHO05D003526 1.5e-40 169.5 115 68.7
BolC8t52555H Brassica oleracea HOM05D003203 ORTHO05D003526 1.5e-40 169.5 115 68.7
TPR.G14912 Trifolium pratense HOM05D003203 ORTHO05D003526 1.5e-40 169.5 115 67.8
MD11G1129800 Malus domestica HOM05D003203 ORTHO05D003526 2.6e-40 168.7 111 68.5
C05p05960 Brassica napus HOM05D003203 ORTHO05D003526 3.4e-40 168.3 115 67.0
PSO765G0134 Papaver somniferum HOM05D003203 ORTHO05D003526 3.4e-40 168.3 111 70.3
Sp1g06590 Schrenkiella parvula HOM05D003203 ORTHO05D003526 3.4e-40 168.3 115 68.7
SpUn0840_0010 Schrenkiella parvula HOM05D003203 ORTHO05D003526 3.4e-40 168.3 115 68.7
HanXRQChr13g0401461 Helianthus annuus HOM05D003203 ORTHO05D003526 4.5e-40 167.9 113 64.6
PSO765G0203 Papaver somniferum HOM05D003203 ORTHO05D003526 4.5e-40 167.9 111 73.0
AL6G53580 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 5.8e-40 167.5 115 65.2
Medtr4g060795 Medicago truncatula HOM05D003203 ORTHO05D003526 5.8e-40 167.5 111 69.4
A06p05020 Brassica napus HOM05D003203 ORTHO05D003526 7.6e-40 167.2 115 66.1
CsaV3_1G013020 Cucumis sativus L. HOM05D003203 ORTHO05D003526 7.6e-40 167.2 111 69.4
CDE07G0939 Ceratophyllum demersum HOM05D003203 ORTHO05D003526 9.9e-40 166.8 115 67.8
AL7G46960 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 1.3e-39 166.4 115 65.2
AL7G46970 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 1.3e-39 166.4 115 65.2
BraA06t23708Z Brassica rapa HOM05D003203 ORTHO05D003526 1.3e-39 166.4 115 66.1
SGA_v2.0_scaffold97G29171 Striga asiatica HOM05D003203 ORTHO05D003526 1.7e-39 166.0 115 64.3
AUR62025015 Chenopodium quinoa HOM05D003203 ORTHO05D003526 2.2e-39 165.6 115 65.2
MELO3C005030.2 Cucumis melo HOM05D003203 ORTHO05D003526 2.2e-39 165.6 111 68.5
AL1G18200 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 2.9e-39 165.2 115 64.3
arahy.Tifrunner.gnm1.ann1.GJ7521 Arachis hypogaea HOM05D003203 ORTHO05D003526 2.9e-39 165.2 115 67.8
BcaC05g24708 Brassica carinata HOM05D003203 ORTHO05D003526 2.9e-39 165.2 115 65.2
Carub.0011s0009 Capsella rubella HOM05D003203 ORTHO05D003526 2.9e-39 165.2 115 64.3
arahy.Tifrunner.gnm1.ann1.DWB64P Arachis hypogaea HOM05D003203 ORTHO05D003526 3.8e-39 164.9 115 67.8
BcaB02g06702 Brassica carinata HOM05D003203 ORTHO05D003526 3.8e-39 164.9 115 67.0
Nitab4.5_0010520g0020 Nicotiana tabacum HOM05D003203 ORTHO05D003526 3.8e-39 164.9 115 64.3
Sp3g30710 Schrenkiella parvula HOM05D003203 ORTHO05D003526 3.8e-39 164.9 115 67.8
Nitab4.5_0000848g0100 Nicotiana tabacum HOM05D003203 ORTHO05D003526 4.9e-39 164.5 115 64.3
PSO063G5461 Papaver somniferum HOM05D003203 ORTHO05D003526 4.9e-39 164.5 109 69.7
PSO339G3960 Papaver somniferum HOM05D003203 ORTHO05D003526 4.9e-39 164.5 109 68.8
Phvul.011G072500 Phaseolus vulgaris HOM05D003203 ORTHO05D003526 4.9e-39 164.5 115 67.8
ATR1159G092 Amborella trichopoda HOM05D003203 ORTHO05D003526 8.4e-39 163.7 115 63.5
AT1G07910 Arabidopsis thaliana HOM05D003203 ORTHO05D003526 8.4e-39 163.7 115 64.3
Migut.D02182 Erythranthe guttata HOM05D003203 ORTHO05D003526 8.4e-39 163.7 115 61.7
HanXRQChr09g0243461 Helianthus annuus HOM05D003203 ORTHO05D003526 8.4e-39 163.7 113 62.8
HPP92_010123 Vanilla planifolia HOM05D002295 ORTHO05D002789 8.4e-39 163.7 109 68.8
Os07g0191700 Oryza sativa ssp. japonica HOM05D003203 ORTHO05D003526 1.4e-38 162.9 115 66.1
Carub.0001s0725 Capsella rubella HOM05D003203 ORTHO05D003526 3.2e-38 161.8 115 62.6
unitig_736.g22420 Utricularia gibba HOM05D003203 ORTHO05D003526 3.2e-38 161.8 115 62.6
Migut.N02091 Erythranthe guttata HOM05D003203 ORTHO05D003526 4.2e-38 161.4 115 63.5
Lsat_1_v5_gn_6_26241 Lactuca sativa HOM05D003203 ORTHO05D003526 5.5e-38 161.0 115 61.7
Nitab4.5_0004347g0030 Nicotiana tabacum HOM05D003203 ORTHO05D003526 5.5e-38 161.0 114 62.3
SHI27633 Sapria himalayana HOM05D003203 ORTHO05D003526 7.1e-38 160.6 111 67.6
Sed0015984 Sechium edule HOM05D003203 ORTHO05D003526 7.1e-38 160.6 112 66.1
Zm00001eb302520 Zea mays HOM05D003203 ORTHO05D003526 7.1e-38 160.6 115 64.3
Lj1A185G36 Lonicera japonica HOM05D003203 ORTHO05D003526 9.3e-38 160.2 115 62.6
SalBow3G4618 Salvia bowleyana HOM05D003203 ORTHO05D003526 9.3e-38 160.2 115 64.3
BolC5t29358H Brassica oleracea HOM05D003203 ORTHO05D003526 1.6e-37 159.5 109 66.1
AUR62006513 Chenopodium quinoa HOM05D003203 ORTHO05D003526 2.1e-37 159.1 115 63.5
EL10Ac9g22449 Beta vulgaris HOM05D003203 ORTHO05D003526 3.5e-37 158.3 115 63.5
Aa31sc36G120 Aethionema arabicum HOM05D003203 ORTHO05D003526 2.3e-36 155.6 107 65.4
DCAR_024905 Daucus carota HOM05D003203 ORTHO05D003526 3.9e-36 154.8 115 60.0
TWI75G1314 Tripterygium wilfordii HOM05D003203 ORTHO05D003526 3.9e-36 154.8 112 71.4
ECA233G2891 Erigeron canadensis HOM05D003203 ORTHO05D003526 6.7e-36 154.1 115 60.0
SalBow6G0781 Salvia bowleyana HOM05D003203 ORTHO05D003526 2.1e-34 149.1 115 60.0
AagrBONN_evm.TU.Sc2ySwM_362.2654 Anthoceros agrestis HOM05D003203 ORTHO05D003526 4.6e-29 131.3 113 54.9
Thhalv10023078m.g Eutrema salsugineum HOM05D003203 ORTHO05D003526 4.6e-29 131.3 115 57.4
BcaC07g41967 Brassica carinata HOM05D003203 ORTHO05D003526 1.1e-27 126.7 78 75.6
SMO223G0015 Selaginella moellendorffii HOM05D003203 ORTHO05D003526 1.9e-27 125.9 113 52.2
CARHR204760 Cardamine hirsuta HOM05D003203 ORTHO05D003526 5.7e-27 124.4 95 61.1
AagrBONN_evm.TU.Sc2ySwM_342.1 Anthoceros agrestis HOM05D003203 ORTHO05D003526 2.1e-26 122.5 106 54.7
Mapoly0005s0012 Marchantia polymorpha HOM05D003203 ORTHO05D003526 1.1e-25 120.2 110 50.9
AagrBONN_evm.TU.Sc2ySwM_244.3 Anthoceros agrestis HOM05D003203 ORTHO05D003526 1.7e-23 112.8 94 56.4
Pp3c27_2850 Physcomitrium patens HOM05D003203 ORTHO05D003526 2.3e-20 102.4 115 42.6
SEGI_33151 Sequoiadendron giganteum HOM05D003203 ORTHO05D003526 3.0e-20 102.1 72 61.1
CBR_g39406 Chara braunii HOM05D003203 ORTHO05D003526 1.3e-18 96.7 114 43.9
AagrBONN_evm.TU.Sc2ySwM_117.4033 Anthoceros agrestis HOM05D003203 ORTHO05D003526 9.0e-17 90.5 73 56.2
AagrBONN_evm.TU.Sc2ySwM_341.1 Anthoceros agrestis HOM05D003203 ORTHO05D003526 9.0e-17 90.5 73 56.2
BcaC07g42504 Brassica carinata HOM05D003203 ORTHO05D003526 9.4e-14 80.5 52 75.0
CARHR007720 Cardamine hirsuta HOM05D003203 ORTHO05D003526 7.4e-11 70.9 115 39.1


User provided reference genes

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