Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE12G0215 Ceratophyllum demersum HOM05D005707 ORTHO05D007276 0.0e+00 1370.5 673 100.0
COL.COLO4_09234 Corchorus olitorius HOM05D005707 ORTHO05D007276 3.4e-289 998.0 702 69.9
Gohir.D11G156360 Gossypium hirsutum HOM05D005707 ORTHO05D007276 3.4e-289 998.0 694 70.2
Gorai.007G166700 Gossypium raimondii HOM05D005707 ORTHO05D007276 4.4e-289 997.7 694 70.5
Gohir.A11G149550 Gossypium hirsutum HOM05D005707 ORTHO05D007276 3.2e-287 991.5 694 70.2
PGR142G3494 Punica granatum HOM05D005707 ORTHO05D007276 3.5e-286 988.0 700 69.1
TAR626G1120 Trochodendron aralioides HOM05D005707 ORTHO05D007276 6.0e-286 987.3 704 69.0
Haze_03608 Corylus avellana HOM05D005707 ORTHO05D007276 2.3e-285 985.3 699 69.0
Cfa007084 Carpinus fangiana HOM05D005707 ORTHO05D007276 5.1e-285 984.2 699 69.0
Prupe.3G200600 Prunus persica HOM05D005707 ORTHO05D007276 5.1e-285 984.2 702 69.5
MBI16_g36319_MAGBIO Magnolia biondii HOM05D005707 ORTHO05D007276 1.5e-284 982.6 699 69.7
Manes.13G062700 Manihot esculenta HOM05D005707 ORTHO05D007276 1.9e-284 982.2 702 68.7
CiPaw.07G002400 Carya illinoinensis HOM05D005707 ORTHO05D007276 1.2e-283 979.5 714 67.8
FvH4_6g40910 Fragaria vesca HOM05D005707 ORTHO05D007276 1.2e-283 979.5 699 69.0
Dinv07863 Davidia involucrata HOM05D005707 ORTHO05D007276 2.1e-283 978.8 719 67.7
Nn1g03422 Nelumbo nucifera HOM05D005707 ORTHO05D007276 2.1e-283 978.8 716 67.7
Potri.014G165400 Populus trichocarpa HOM05D005707 ORTHO05D007276 2.1e-283 978.8 703 68.8
Duzib138G1526 Durio zibethinus HOM05D005707 ORTHO05D007276 2.8e-283 978.4 694 69.2
FAN14G2372 Fragaria x ananassa HOM05D005707 ORTHO05D007276 2.8e-283 978.4 699 68.8
Atru.BG.42.p Acer truncatum HOM05D005707 ORTHO05D007276 3.6e-283 978.0 689 69.7
RcHm_v2.0_Chr2g0156491 Rosa chinensis HOM05D005707 ORTHO05D007276 3.6e-283 978.0 703 68.6
Eucgr.A01050 Eucalyptus grandis HOM05D005707 ORTHO05D007276 4.7e-283 977.6 700 69.0
MD09G1123500 Malus domestica HOM05D005707 ORTHO05D007276 4.7e-283 977.6 703 69.6
MD17G1113900 Malus domestica HOM05D005707 ORTHO05D007276 4.7e-283 977.6 704 68.9
FAN05G2777 Fragaria x ananassa HOM05D005707 ORTHO05D007276 6.2e-283 977.2 699 68.8
GSVIVG01030049001 Vitis vinifera HOM05D005707 ORTHO05D007276 1.8e-282 975.7 689 70.1
Nn1g03246 Nelumbo nucifera HOM05D005707 ORTHO05D007276 2.4e-282 975.3 715 67.8
CSS0003308 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 4.0e-282 974.5 722 67.3
CSS0049316 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 4.0e-282 974.5 722 67.3
Ciclev10018207m.g Citrus clementina HOM05D005707 ORTHO05D007276 2.0e-281 972.2 712 67.7
ClCG02G009340 Citrullus lanatus HOM05D005707 ORTHO05D007276 2.6e-281 971.8 715 67.4
FAN09G4573 Fragaria x ananassa HOM05D005707 ORTHO05D007276 2.6e-281 971.8 699 68.4
QL06p053011 Quercus lobata HOM05D005707 ORTHO05D007276 2.6e-281 971.8 691 69.5
Aqoxy2G03044 Aquilegia oxysepala HOM05D005707 ORTHO05D007276 3.4e-281 971.5 715 67.8
FAN02G0692 Fragaria x ananassa HOM05D005707 ORTHO05D007276 3.4e-281 971.5 699 68.4
Manes.12G065301 Manihot esculenta HOM05D005707 ORTHO05D007276 7.6e-281 970.3 714 67.9
Sabra14G0126000 Salix brachista HOM05D005707 ORTHO05D007276 1.3e-280 969.5 717 67.4
CsaV3_6G009510 Cucumis sativus L. HOM05D005707 ORTHO05D007276 1.4e-279 966.1 718 66.0
Hma1.2p1_1267F.1_g271460 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 1.4e-279 966.1 695 68.3
CANSAT64G1567 Cannabis sativa HOM05D005707 ORTHO05D007276 1.9e-279 965.7 711 67.5
VMungo0331G1616 Vigna mungo HOM05D005707 ORTHO05D007276 1.9e-279 965.7 712 68.0
MELO3C025972.2 Cucumis melo HOM05D005707 ORTHO05D007276 3.2e-279 964.9 719 65.6
MSTRG.14925 Avicennia marina HOM05D005707 ORTHO05D007276 7.1e-279 963.8 716 67.6
PSO732G0538 Papaver somniferum HOM05D005707 ORTHO05D007276 7.1e-279 963.8 705 67.5
Lj8A134G73 Lonicera japonica HOM05D005707 ORTHO05D007276 9.2e-279 963.4 699 68.1
Rhsim06G0174400 Rhododendron simsii HOM05D005707 ORTHO05D007276 1.6e-278 962.6 714 67.5
Actinidia09778 Actinidia chinensis HOM05D005707 ORTHO05D007276 3.5e-278 961.4 716 67.2
Ca_27368_v3 Cicer arietinum L. HOM05D005707 ORTHO05D007276 4.6e-278 961.1 700 68.6
PSO675G5925 Papaver somniferum HOM05D005707 ORTHO05D007276 6.0e-278 960.7 718 66.2
Sopen06g023670 Solanum pennellii HOM05D005707 ORTHO05D007276 1.0e-277 959.9 711 66.4
CAN.G308.64 Capsicum annuum HOM05D005707 ORTHO05D007276 1.7e-277 959.1 717 66.7
Sed0013138 Sechium edule HOM05D005707 ORTHO05D007276 2.3e-277 958.7 711 66.8
PGSC0003DMG400026068 Solanum tuberosum HOM05D005707 ORTHO05D007276 2.3e-277 958.7 709 66.7
Migut.M00030 Erythranthe guttata HOM05D005707 ORTHO05D007276 3.9e-277 958.0 707 67.9
Glyma.07G119500 Glycine max HOM05D005707 ORTHO05D007276 3.9e-277 958.0 718 67.5
Phvul.010G042100 Phaseolus vulgaris HOM05D005707 ORTHO05D007276 3.9e-277 958.0 715 67.3
TWI75G1501 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 3.9e-277 958.0 704 67.5
TWI18G1214 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 5.1e-277 957.6 711 67.1
DCAR_012906 Daucus carota HOM05D005707 ORTHO05D007276 1.1e-276 956.4 695 66.9
Solyc06g065170.4 Solanum lycopersicum HOM05D005707 ORTHO05D007276 1.5e-276 956.1 711 66.1
ECA240G2058 Erigeron canadensis HOM05D005707 ORTHO05D007276 1.9e-276 955.7 693 67.8
vmacro12103 Vaccinium macrocarpon HOM05D005707 ORTHO05D007276 1.9e-276 955.7 713 66.8
Lsat_1_v5_gn_0_5460 Lactuca sativa HOM05D005707 ORTHO05D007276 3.3e-276 954.9 699 68.2
Glyma.03G104400 Glycine max HOM05D005707 ORTHO05D007276 9.6e-276 953.4 718 67.1
Lalb_Chr01g0023301 Lupinus albus HOM05D005707 ORTHO05D007276 9.6e-276 953.4 702 67.0
Nitab4.5_0000303g0290 Nicotiana tabacum HOM05D005707 ORTHO05D007276 9.6e-276 953.4 716 66.5
Lj1g0027558 Lotus japonicus HOM05D005707 ORTHO05D007276 1.2e-275 953.0 701 67.6
Sed0020801 Sechium edule HOM05D005707 ORTHO05D007276 1.2e-275 953.0 695 66.9
arahy.Tifrunner.gnm1.ann1.T3MKLR Arachis hypogaea HOM05D005707 ORTHO05D007276 1.6e-275 952.6 700 67.9
Nitab4.5_0001082g0050 Nicotiana tabacum HOM05D005707 ORTHO05D007276 2.1e-275 952.2 713 65.9
Sc15g0001000 Simmondsia chinensis HOM05D005707 ORTHO05D007276 2.1e-275 952.2 708 67.1
Lj6g0020016 Lotus japonicus HOM05D005707 ORTHO05D007276 2.0e-273 945.7 715 66.9
Oeu040469.1 Olea europaea HOM05D005707 ORTHO05D007276 2.6e-273 945.3 715 65.5
Hund18608 Selenicereus undatus HOM05D005707 ORTHO05D007276 7.6e-273 943.7 716 65.6
THA.LOC104808851 Tarenaya hassleriana HOM05D005707 ORTHO05D007276 2.9e-272 941.8 711 65.8
Cc07_g12010 Coffea canephora HOM05D005707 ORTHO05D007276 3.8e-272 941.4 695 67.3
Lsat_1_v5_gn_9_90020 Lactuca sativa HOM05D005707 ORTHO05D007276 3.8e-272 941.4 709 66.7
HanXRQChr03g0075251 Helianthus annuus HOM05D005707 ORTHO05D007276 6.4e-272 940.6 710 66.1
arahy.Tifrunner.gnm1.ann1.DQM4AF Arachis hypogaea HOM05D005707 ORTHO05D007276 8.4e-272 940.3 718 66.0
Peaxi162Scf00268g00614 Petunia axillaris HOM05D005707 ORTHO05D007276 1.9e-271 939.1 700 66.9
Medtr1g019500 Medicago truncatula HOM05D005707 ORTHO05D007276 4.2e-271 937.9 709 66.9
Sp3g23690 Schrenkiella parvula HOM05D005707 ORTHO05D007276 4.2e-271 937.9 701 65.6
SpUn0142_0010 Schrenkiella parvula HOM05D005707 ORTHO05D007276 4.2e-271 937.9 701 65.6
Thhalv10002393m.g Eutrema salsugineum HOM05D005707 ORTHO05D007276 5.4e-271 937.6 701 65.2
EL10Ac7g18165 Beta vulgaris HOM05D005707 ORTHO05D007276 7.1e-271 937.2 706 65.7
AUR62001346 Chenopodium quinoa HOM05D005707 ORTHO05D007276 1.2e-270 936.4 710 65.4
AUR62025658 Chenopodium quinoa HOM05D005707 ORTHO05D007276 1.2e-270 936.4 708 65.8
Lj1C792T2 Lonicera japonica HOM05D005707 ORTHO05D007276 1.2e-270 936.4 702 65.8
Zm00001eb420950 Zea mays HOM05D005707 ORTHO05D007276 2.1e-270 935.6 711 65.3
Os04g0382700 Oryza sativa ssp. japonica HOM05D005707 ORTHO05D007276 3.5e-270 934.9 711 65.1
TPR.G3804 Trifolium pratense HOM05D005707 ORTHO05D007276 7.8e-270 933.7 700 67.0
A07p06540 Brassica napus HOM05D005707 ORTHO05D007276 1.3e-269 932.9 701 65.0
CARHR103040 Cardamine hirsuta HOM05D005707 ORTHO05D007276 5.1e-269 931.0 705 64.7
BcaC06g35905 Brassica carinata HOM05D005707 ORTHO05D007276 6.6e-269 930.6 701 64.8
BolC7t41423H Brassica oleracea HOM05D005707 ORTHO05D007276 6.6e-269 930.6 701 64.8
BraA07t28449Z Brassica rapa HOM05D005707 ORTHO05D007276 6.6e-269 930.6 701 64.9
C07p09820 Brassica napus HOM05D005707 ORTHO05D007276 9.6e-268 926.8 701 64.8
Carub.0003s2668 Capsella rubella HOM05D005707 ORTHO05D007276 1.3e-267 926.4 701 65.0
BcaB06g26833 Brassica carinata HOM05D005707 ORTHO05D007276 1.6e-267 926.0 696 65.1
Lalb_Chr19g0124221 Lupinus albus HOM05D005707 ORTHO05D007276 2.8e-267 925.2 714 65.0
SGA_v2.0_scaffold73G24514 Striga asiatica HOM05D005707 ORTHO05D007276 4.8e-267 924.5 705 65.5
AL3G42770 Arabidopsis lyrata HOM05D005707 ORTHO05D007276 8.1e-267 923.7 701 64.8
Ah.15g094340 Amaranthus hybridus HOM05D005707 ORTHO05D007276 1.4e-266 922.9 711 65.4
Aa31LG9G17700 Aethionema arabicum HOM05D005707 ORTHO05D007276 2.4e-266 922.2 701 64.5
ATR0626G192 Amborella trichopoda HOM05D005707 ORTHO05D007276 3.1e-266 921.8 707 66.1
AT2G05170 Arabidopsis thaliana HOM05D005707 ORTHO05D007276 2.6e-265 918.7 700 64.9
SEGI_38374 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 5.3e-258 894.4 717 63.7
unitig_37.g12597 Utricularia gibba HOM05D005707 ORTHO05D007276 6.7e-253 877.5 696 62.1
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 1.7e-248 862.8 664 64.9
Thecc.01G191800 Theobroma cacao HOM05D005707 ORTHO05D007276 3.4e-233 812.0 591 68.7
Psat6g013160 Pisum sativum HOM05D005707 ORTHO05D007276 7.0e-226 787.7 591 67.3
DCAR_028089 Daucus carota HOM05D005707 ORTHO05D007276 2.2e-224 782.7 602 64.6
Mapoly0022s0120 Marchantia polymorpha HOM05D005707 ORTHO05D007276 2.9e-224 782.3 761 55.2
AagrBONN_evm.TU.Sc2ySwM_344.1573 Anthoceros agrestis HOM05D005707 ORTHO05D007276 6.3e-219 764.6 714 54.9
SMO329G0026 Selaginella moellendorffii HOM05D005707 ORTHO05D007276 8.0e-214 747.7 691 55.7
Pp3c25_5560 Physcomitrium patens HOM05D005707 ORTHO05D007276 2.1e-206 723.0 778 50.0
Cpa.g.sc211.13 Carica papaya HOM05D005707 ORTHO05D007276 5.4e-202 708.4 667 55.6
CBR_g20017 Chara braunii HOM05D005707 ORTHO05D007276 6.6e-192 674.9 752 47.7
HPP92_028369 Vanilla planifolia HOM05D005707 ORTHO05D007276 2.7e-161 573.2 452 64.4
Hma1.2p1_1267F.1_g271470 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 1.7e-152 543.9 391 68.5
Hma1.2p1_2056F.1_g312820 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 1.7e-152 543.9 391 68.5
Lsat_1_v5_gn_9_104540 Lactuca sativa HOM05D005707 ORTHO05D007276 6.3e-110 402.5 220 85.5
PRCOL_00006472 Prasinoderma coloniale HOM05D005707 ORTHO05D007276 1.5e-87 328.2 632 34.7
Cre02.g095074 Chlamydomonas reinhardtii HOM05D005707 ORTHO05D007276 1.0e-80 305.4 999 24.2
Nn6g32392 Nelumbo nucifera HOM05D005707 ORTHO05D007276 2.4e-61 241.1 178 69.1
HPP92_014038 Vanilla planifolia HOM05D005707 ORTHO05D007276 9.9e-55 219.2 190 63.7
Nn6g32391 Nelumbo nucifera HOM05D005707 ORTHO05D007276 3.0e-43 181.0 119 72.3
Peaxi162Scf00585g00082 Petunia axillaris HOM05D000636 ORTHO05D002338 1.6e-36 158.7 115 65.2
HPP92_028368 Vanilla planifolia HOM05D005707 ORTHO05D007276 3.0e-27 127.9 64 84.4
SEGI_06176 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 1.1e-26 125.9 89 67.4
HPP92_014037 Vanilla planifolia HOM05D005707 ORTHO05D048631 1.1e-24 119.4 113 54.9
Nn2g13354 Nelumbo nucifera HOM05D005707 ORTHO05D007276 1.8e-24 118.6 64 76.6
HPP92_014036 Vanilla planifolia HOM05D005707 ORTHO05D007276 4.8e-17 94.0 42 88.1
VMungo0331G0660 Vigna mungo HOM05D000100 ORTHO05D000052 1.7e-14 85.5 80 57.5


User provided reference genes

Program Settings