Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE11G0767 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 3.5e-128 461.8 266 100.0
CDE05G0147 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 2.0e-91 339.7 208 97.6
ATR0767G209 Amborella trichopoda HOM05D005935 ORTHO05D007012 2.1e-77 293.1 204 84.8
TAR362G1094 Trochodendron aralioides HOM05D005935 ORTHO05D007012 2.1e-72 276.6 205 84.9
ClCG02G015080 Citrullus lanatus HOM05D005935 ORTHO05D007012 6.0e-72 275.0 204 84.8
MELO3C004198.2 Cucumis melo HOM05D005935 ORTHO05D007012 6.0e-72 275.0 204 84.8
MD04G1195100 Malus domestica HOM05D005935 ORTHO05D007012 7.8e-72 274.6 202 87.1
Manes.09G175700 Manihot esculenta HOM05D005935 ORTHO05D007012 1.0e-71 274.2 201 86.6
GSVIVG01031220001 Vitis vinifera HOM05D005935 ORTHO05D007012 1.3e-71 273.9 206 84.0
SEGI_34613 Sequoiadendron giganteum HOM05D005935 ORTHO05D007012 1.7e-71 273.5 204 77.0
CsaV3_2G006940 Cucumis sativus L. HOM05D005935 ORTHO05D007012 3.0e-71 272.7 204 83.8
Prupe.6G314900 Prunus persica HOM05D005935 ORTHO05D007012 8.6e-71 271.2 205 85.4
Dinv24425 Davidia involucrata HOM05D005935 ORTHO05D007012 1.1e-70 270.8 206 84.5
EL10Ac4g09829 Beta vulgaris HOM05D005935 ORTHO05D007012 1.9e-70 270.0 205 84.4
Sed0001365 Sechium edule HOM05D005935 ORTHO05D007012 2.5e-70 269.6 204 82.8
Atru.chr2.148 Acer truncatum HOM05D005935 ORTHO05D007012 7.3e-70 268.1 202 84.7
MD12G1207200 Malus domestica HOM05D005935 ORTHO05D007012 1.2e-69 267.3 201 86.1
Aqoxy2G00839 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 1.6e-69 266.9 206 84.5
Eucgr.H03282 Eucalyptus grandis HOM05D005935 ORTHO05D007012 2.1e-69 266.5 201 84.6
CiPaw.07G028100 Carya illinoinensis HOM05D005935 ORTHO05D007012 2.8e-69 266.2 205 82.4
Nn3g21642 Nelumbo nucifera HOM05D005935 ORTHO05D007012 2.8e-69 266.2 200 83.5
SGA_v2.0_scaffold81G26126 Striga asiatica HOM05D005935 ORTHO05D007012 8.1e-69 264.6 205 83.4
Haze_04079 Corylus avellana HOM05D005935 ORTHO05D007012 1.8e-68 263.5 210 79.0
Os03g0831900 Oryza sativa ssp. japonica HOM05D005935 ORTHO05D007012 2.4e-68 263.1 202 81.2
RcHm_v2.0_Chr3g0456881 Rosa chinensis HOM05D005935 ORTHO05D007012 5.2e-68 261.9 201 83.6
Ah.06g188880 Amaranthus hybridus HOM05D005935 ORTHO05D007012 6.9e-68 261.5 205 81.5
PGR031G1309 Punica granatum HOM05D005935 ORTHO05D007012 9.0e-68 261.2 200 81.5
TAR636G0846 Trochodendron aralioides HOM05D005935 ORTHO05D007012 1.2e-67 260.8 205 82.9
Lj1g0021681 Lotus japonicus HOM05D005935 ORTHO05D007012 1.5e-67 260.4 201 81.1
MSTRG.27950 Avicennia marina HOM05D005935 ORTHO05D007012 2.6e-67 259.6 205 82.9
Migut.N01391 Erythranthe guttata HOM05D005935 ORTHO05D007012 2.6e-67 259.6 205 81.5
Lsat_1_v5_gn_5_102820 Lactuca sativa HOM05D005935 ORTHO05D007012 2.6e-67 259.6 199 82.4
SGA_v2.0_scaffold80G25879 Striga asiatica HOM05D005935 ORTHO05D007012 2.6e-67 259.6 205 82.0
CAN.G1715.16 Capsicum annuum HOM05D005935 ORTHO05D007012 3.4e-67 259.2 204 81.4
Phvul.001G225500 Phaseolus vulgaris HOM05D005935 ORTHO05D007012 3.4e-67 259.2 205 81.0
Zm00001eb121760 Zea mays HOM05D005935 ORTHO05D007012 4.4e-67 258.8 201 77.1
Aqoxy4G02482 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 5.8e-67 258.5 206 82.5
Glyma.19G228900 Glycine max HOM05D005935 ORTHO05D007012 5.8e-67 258.5 204 80.9
Cc02_g34830 Coffea canephora HOM05D005935 ORTHO05D007012 7.6e-67 258.1 204 78.9
Sopen01g043840 Solanum pennellii HOM05D005935 ORTHO05D007012 1.7e-66 256.9 204 78.9
arahy.Tifrunner.gnm1.ann1.H1X696 Arachis hypogaea HOM05D005935 ORTHO05D007012 2.9e-66 256.1 227 74.0
arahy.Tifrunner.gnm1.ann1.I9BDFC Arachis hypogaea HOM05D005935 ORTHO05D007012 3.8e-66 255.8 218 74.8
Solyc01g100330.3 Solanum lycopersicum HOM05D005935 ORTHO05D007012 3.8e-66 255.8 204 78.4
PGSC0003DMG400002806 Solanum tuberosum HOM05D005935 ORTHO05D007012 3.8e-66 255.8 204 78.4
SalBow3G1520 Salvia bowleyana HOM05D005935 ORTHO05D007012 4.9e-66 255.4 204 78.9
TWI36G1229 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 8.4e-66 254.6 201 82.6
arahy.Tifrunner.gnm1.ann1.G5WI6L Arachis hypogaea HOM05D005935 ORTHO05D007012 1.1e-65 254.2 205 79.5
arahy.Tifrunner.gnm1.ann1.7UDZ1N Arachis hypogaea HOM05D005935 ORTHO05D007012 1.4e-65 253.8 213 74.2
FvH4_6g07240 Fragaria vesca HOM05D005935 ORTHO05D007012 1.4e-65 253.8 198 83.3
Glyma.03G231900 Glycine max HOM05D005935 ORTHO05D007012 7.1e-65 251.5 204 78.9
Thecc.05G321000 Theobroma cacao HOM05D005935 ORTHO05D007012 9.3e-65 251.1 201 81.6
Hma1.2p1_0008F-1.1_g005750 Hydrangea macrophylla HOM05D005935 ORTHO05D007012 1.6e-64 250.4 205 80.0
Cpa.g.sc48.144 Carica papaya HOM05D005935 ORTHO05D007012 2.7e-64 249.6 201 81.1
TWI56G1463 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 3.5e-64 249.2 201 81.1
Actinidia16851 Actinidia chinensis HOM05D005935 ORTHO05D007012 6.0e-64 248.4 195 83.6
Ca_09298_v3 Cicer arietinum L. HOM05D005935 ORTHO05D007012 6.0e-64 248.4 204 77.5
Peaxi162Scf00673g00126 Petunia axillaris HOM05D005935 ORTHO05D007012 6.0e-64 248.4 196 82.1
unitig_21.g20172 Utricularia gibba HOM05D005935 ORTHO05D007012 7.8e-64 248.1 202 80.7
Lalb_Chr18g0046051 Lupinus albus HOM05D005935 ORTHO05D007012 1.7e-63 246.9 206 77.7
VMungo1383G1193 Vigna mungo HOM05D005935 ORTHO05D007012 1.7e-63 246.9 197 80.7
Gohir.D08G223300 Gossypium hirsutum HOM05D005935 ORTHO05D007012 2.3e-63 246.5 201 80.6
Gorai.004G237200 Gossypium raimondii HOM05D005935 ORTHO05D007012 2.3e-63 246.5 201 80.6
COL.COLO4_04140 Corchorus olitorius HOM05D005935 ORTHO05D007012 3.9e-63 245.7 201 79.6
Ciclev10002528m.g Citrus clementina HOM05D005935 ORTHO05D007012 5.1e-63 245.4 200 81.0
FAN05G5324 Fragaria x ananassa HOM05D005935 ORTHO05D007012 5.1e-63 245.4 208 78.8
FAN14G3557 Fragaria x ananassa HOM05D005935 ORTHO05D007012 6.6e-63 245.0 208 78.8
Medtr7g112060 Medicago truncatula HOM05D005935 ORTHO05D007012 6.6e-63 245.0 199 77.4
QL03p018299 Quercus lobata HOM05D005935 ORTHO05D007012 6.6e-63 245.0 204 77.0
Gohir.A08G206600 Gossypium hirsutum HOM05D005935 ORTHO05D007012 8.7e-63 244.6 201 80.1
CARHR080230 Cardamine hirsuta HOM05D005935 ORTHO05D007012 1.5e-62 243.8 199 78.9
FAN02G1619 Fragaria x ananassa HOM05D005935 ORTHO05D007012 1.5e-62 243.8 208 78.4
PSO170G3047 Papaver somniferum HOM05D005935 ORTHO05D007012 1.5e-62 243.8 200 80.0
PSO357G0321 Papaver somniferum HOM05D005935 ORTHO05D007012 1.5e-62 243.8 200 80.0
C05p61480 Brassica napus HOM05D002110 ORTHO05D007012 1.9e-62 243.4 199 77.9
Mapoly0111s0002 Marchantia polymorpha HOM05D005935 ORTHO05D007012 1.9e-62 243.4 197 78.2
HanXRQChr10g0299201 Helianthus annuus HOM05D005935 ORTHO05D007012 2.5e-62 243.0 200 80.5
Sc09g0002670 Simmondsia chinensis HOM05D005935 ORTHO05D007012 3.3e-62 242.7 205 79.0
CANSAT54G1507 Cannabis sativa HOM05D005935 ORTHO05D007012 9.6e-62 241.1 207 78.7
QL01p019294 Quercus lobata HOM05D005935 ORTHO05D007012 9.6e-62 241.1 200 78.5
vmacro01555 Vaccinium macrocarpon HOM05D005935 ORTHO05D007012 1.3e-61 240.7 248 67.7
BraA05t22944Z Brassica rapa HOM05D002110 ORTHO05D007012 2.1e-61 240.0 199 75.4
Potri.013G010300 Populus trichocarpa HOM05D005935 ORTHO05D007012 2.8e-61 239.6 200 80.5
BolC5t34806H Brassica oleracea HOM05D002110 ORTHO05D007012 4.8e-61 238.8 198 73.7
Lalb_Chr04g0260471 Lupinus albus HOM05D005935 ORTHO05D007012 4.8e-61 238.8 206 69.4
THA.LOC104802776 Tarenaya hassleriana HOM05D005935 ORTHO05D007012 4.8e-61 238.8 199 75.9
BcaC05g30089 Brassica carinata HOM05D005935 ORTHO05D007012 8.1e-61 238.0 199 73.9
ECA234G4853 Erigeron canadensis HOM05D005935 ORTHO05D007012 5.3e-60 235.3 204 74.5
Pp3c4_20180 Physcomitrium patens HOM05D005935 ORTHO05D007012 5.3e-60 235.3 202 74.8
AUR62000683 Chenopodium quinoa HOM05D005935 ORTHO05D007012 6.9e-60 235.0 205 74.6
Carub.0003s0513 Capsella rubella HOM05D005935 ORTHO05D007012 2.0e-59 233.4 199 73.9
AT3G05760 Arabidopsis thaliana HOM05D005935 ORTHO05D007012 4.5e-59 232.3 199 73.9
FAN09G4449 Fragaria x ananassa HOM05D005935 ORTHO05D007012 4.5e-59 232.3 145 83.4
PSO478G5244 Papaver somniferum HOM05D005935 ORTHO05D007012 5.8e-59 231.9 195 80.0
Sp3g04650 Schrenkiella parvula HOM05D005935 ORTHO05D007012 7.6e-59 231.5 199 73.4
Duzib128G1094 Durio zibethinus HOM05D005935 ORTHO05D007012 2.9e-58 229.6 151 78.8
AL3G16500 Arabidopsis lyrata HOM05D005935 ORTHO05D007012 4.9e-58 228.8 199 72.4
HPP92_015241 Vanilla planifolia HOM05D005935 ORTHO05D007012 4.9e-58 228.8 196 80.1
CSS0047945 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 6.4e-58 228.4 164 89.0
Nitab4.5_0000155g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 6.4e-58 228.4 204 74.0
Psat3g013040 Pisum sativum HOM05D005935 ORTHO05D007012 6.4e-58 228.4 199 73.4
Nitab4.5_0013342g0020 Nicotiana tabacum HOM05D000001 ORTHO05D004269 1.4e-57 227.3 208 74.5
DCAR_005416 Daucus carota HOM05D005935 ORTHO05D007012 1.9e-57 226.9 171 86.5
TPR.G1633 Trifolium pratense HOM05D005935 ORTHO05D007012 1.9e-57 226.9 200 72.5
BcaC05g29782 Brassica carinata HOM05D005935 ORTHO05D007012 2.4e-57 226.5 199 70.9
AagrBONN_evm.TU.Sc2ySwM_344.1201 Anthoceros agrestis HOM05D005935 ORTHO05D007012 5.4e-57 225.3 147 75.5
AagrBONN_evm.TU.Sc2ySwM_228.1845 Anthoceros agrestis HOM05D005935 ORTHO05D007012 6.7e-55 218.4 144 74.3
AagrBONN_evm.TU.Sc2ySwM_368.1862 Anthoceros agrestis HOM05D005935 ORTHO05D007012 6.2e-53 211.8 130 80.0
Aa31LG5G16170 Aethionema arabicum HOM05D005935 ORTHO05D007012 1.2e-51 207.6 211 56.9
Thhalv10022198m.g Eutrema salsugineum HOM05D005935 ORTHO05D007012 1.5e-51 207.2 310 51.0
Hund07136 Selenicereus undatus HOM05D005935 ORTHO05D007012 3.4e-51 206.1 296 53.7
AUR62005273 Chenopodium quinoa HOM05D005935 ORTHO05D007012 6.4e-50 201.8 199 70.4
Nitab4.5_0000368g0260 Nicotiana tabacum HOM05D005935 ORTHO05D007012 1.9e-49 200.3 203 62.1
Lj5A336T44 Lonicera japonica HOM05D005935 ORTHO05D007012 4.6e-48 195.7 112 85.7
SMO201G0167 Selaginella moellendorffii HOM05D005935 ORTHO05D007012 4.6e-48 195.7 204 61.3
CSS0009551 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 2.3e-47 193.4 197 72.6
Rhsim11G0094200 Rhododendron simsii HOM05D005935 ORTHO05D007012 6.7e-47 191.8 205 58.0
Hund21747 Selenicereus undatus HOM05D005935 ORTHO05D007012 9.6e-46 188.0 204 66.7
Pp3c12_7700 Physcomitrium patens HOM05D005935 ORTHO05D007012 3.8e-42 176.0 173 71.7
CSS0024691 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 2.1e-40 170.2 145 66.9
Oeu013219.2 Olea europaea HOM05D005935 ORTHO05D007012 5.1e-39 165.6 224 61.2
RcHm_v2.0_Chr7g0179971 Rosa chinensis HOM05D005935 ORTHO05D007012 2.5e-38 163.3 144 61.8
CSS0031844 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 7.6e-35 151.8 122 69.7
CSS0034550 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 3.8e-34 149.4 209 60.8
Nitab4.5_0007747g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 9.3e-33 144.8 124 82.3
Sabra13G0008800 Salix brachista HOM05D005935 ORTHO05D007012 6.7e-31 138.7 223 44.4
CBR_g38440 Chara braunii HOM05D005935 ORTHO05D007012 4.3e-30 136.0 104 67.3
Actinidia35528 Actinidia chinensis HOM05D005935 ORTHO05D007012 4.8e-29 132.5 285 47.0
Cre07.g341650 Chlamydomonas reinhardtii HOM05D005935 ORTHO05D007012 5.9e-27 125.6 229 49.3
FAN04G2955 Fragaria x ananassa HOM05D005935 ORTHO05D007012 6.1e-24 115.5 154 46.8
MCO03G264 Micromonas commoda HOM05D005935 ORTHO05D007012 3.7e-21 106.3 213 42.7
PRCOL_00000245 Prasinoderma coloniale HOM05D005935 ORTHO05D007012 5.5e-17 92.4 211 37.0
Zm00001eb307900 Zea mays HOM05D005935 ORTHO05D007012 2.3e-15 87.0 96 70.8
Zm00001eb114570 Zea mays HOM05D005935 ORTHO05D007012 7.4e-14 82.0 91 71.4
Zm00001eb180860 Zea mays HOM05D005935 ORTHO05D007012 5.0e-10 69.3 46 73.9
Cfa024511 Carpinus fangiana HOM05D005935 ORTHO05D007012 6.1e-08 62.4 142 29.6


User provided reference genes

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