Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE07G0820 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 2454.5 1204 100.0
CDE04G1796 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1946.4 1216 80.8
Aqoxy6G00493 Aquilegia oxysepala HOM05D004874 ORTHO05D006796 0.0e+00 1529.6 1285 60.0
PSO541G0735 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1521.5 1276 59.5
PSO675G8458 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1519.6 1273 60.0
Nn5g28922 Nelumbo nucifera HOM05D004874 ORTHO05D006796 0.0e+00 1512.7 1277 60.1
CSS0018271 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1505.0 1276 59.3
Ciclev10024728m.g Citrus clementina HOM05D004874 ORTHO05D006796 0.0e+00 1498.0 1276 58.7
Dinv19497 Davidia involucrata HOM05D004874 ORTHO05D006796 0.0e+00 1496.5 1278 59.2
Thecc.01G111200 Theobroma cacao HOM05D004874 ORTHO05D006796 0.0e+00 1496.5 1278 58.1
Atru.chr4.387 Acer truncatum HOM05D004874 ORTHO05D006796 0.0e+00 1493.0 1277 58.8
Lj1g0000337 Lotus japonicus HOM05D004874 ORTHO05D006796 0.0e+00 1492.6 1271 56.9
Glyma.06G145900 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1490.3 1269 57.0
Gorai.011G111800 Gossypium raimondii HOM05D004874 ORTHO05D006796 0.0e+00 1488.4 1278 58.0
Gohir.A10G086600 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1485.7 1278 57.9
Phvul.009G140100 Phaseolus vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1483.8 1270 57.1
CSS0002284 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1482.6 1282 58.6
Gohir.D10G102100 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1482.6 1278 57.9
Actinidia15577 Actinidia chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1481.8 1274 57.9
MD15G1333600 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1481.1 1274 58.5
GSVIVG01022217001 Vitis vinifera HOM05D004874 ORTHO05D006796 0.0e+00 1479.5 1275 58.5
QL06p032401 Quercus lobata HOM05D004874 ORTHO05D006796 0.0e+00 1475.7 1276 57.7
VMungo1309G2704 Vigna mungo HOM05D004874 ORTHO05D006796 0.0e+00 1474.5 1271 56.6
Glyma.04G220000 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1473.8 1269 56.5
Prupe.6G174100 Prunus persica HOM05D004874 ORTHO05D006796 0.0e+00 1473.4 1274 58.6
CANSAT01G0647 Cannabis sativa HOM05D004874 ORTHO05D006796 0.0e+00 1473.0 1273 57.5
Potri.005G083800 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1470.7 1276 57.4
TWI74G1507 Tripterygium wilfordii HOM05D004874 ORTHO05D006796 0.0e+00 1470.7 1277 57.2
FvH4_1g22150 Fragaria vesca HOM05D004874 ORTHO05D006796 0.0e+00 1466.8 1278 57.7
Potri.007G081900 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1464.5 1277 56.9
Sabra05G0068900 Salix brachista HOM05D004874 ORTHO05D006796 0.0e+00 1461.8 1283 57.2
Manes.13G077640 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1459.9 1274 57.1
FAN23G3027 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1453.7 1278 57.2
FAN28G2703 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1453.7 1278 57.1
Haze_25029 Corylus avellana HOM05D004874 ORTHO05D006796 0.0e+00 1451.0 1238 59.7
RcHm_v2.0_Chr2g0116231 Rosa chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1449.9 1275 57.2
ClCG01G016180 Citrullus lanatus HOM05D004874 ORTHO05D006796 0.0e+00 1448.0 1272 57.1
FAN19G0866 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1447.6 1304 56.4
FAN26G2351 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1447.6 1279 57.2
Psat5g065960 Pisum sativum HOM05D004874 ORTHO05D006796 0.0e+00 1447.6 1271 55.5
Manes.12G141800 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1446.0 1235 58.3
Medtr3g094770 Medicago truncatula HOM05D004874 ORTHO05D006796 0.0e+00 1443.7 1272 55.5
Ca_16889_v3 Cicer arietinum L. HOM05D004874 ORTHO05D006796 0.0e+00 1442.9 1272 55.7
TPR.G23744 Trifolium pratense HOM05D004874 ORTHO05D006796 0.0e+00 1439.1 1271 55.2
Rhsim10G0151300 Rhododendron simsii HOM05D004874 ORTHO05D006796 0.0e+00 1435.6 1279 56.5
CsaV3_6G042450 Cucumis sativus L. HOM05D004874 ORTHO05D006796 0.0e+00 1435.2 1273 56.5
arahy.Tifrunner.gnm1.ann1.ZQBN5H Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1431.0 1277 55.7
arahy.Tifrunner.gnm1.ann1.M2IALY Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1428.7 1277 55.6
Cc07_g16070 Coffea canephora HOM05D004874 ORTHO05D006796 0.0e+00 1427.5 1277 55.9
ATR0564G436 Amborella trichopoda HOM05D004874 ORTHO05D006796 0.0e+00 1418.7 1290 56.5
Eucgr.H04838 Eucalyptus grandis HOM05D004874 ORTHO05D006796 0.0e+00 1417.9 1271 56.0
THA.LOC104804146 Tarenaya hassleriana HOM05D004874 ORTHO05D006796 0.0e+00 1411.7 1270 55.7
Peaxi162Scf00323g00112 Petunia axillaris HOM05D004874 ORTHO05D006796 0.0e+00 1407.1 1248 56.6
Lalb_Chr11g0068041 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1405.2 1271 54.7
Sopen04g023580 Solanum pennellii HOM05D004874 ORTHO05D006796 0.0e+00 1405.2 1278 55.2
CAN.G1728.1 Capsicum annuum HOM05D004874 ORTHO05D006796 0.0e+00 1393.3 1280 55.2
Solyc04g054140.4 Solanum lycopersicum HOM05D004874 ORTHO05D006796 0.0e+00 1392.5 1283 54.9
PGR102G1404 Punica granatum HOM05D004874 ORTHO05D006796 0.0e+00 1391.7 1231 56.5
EL10Ac6g14746 Beta vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1382.5 1354 52.1
CARHR113090 Cardamine hirsuta HOM05D004874 ORTHO05D006796 0.0e+00 1374.4 1276 54.5
Carub.0004s0115 Capsella rubella HOM05D004874 ORTHO05D006796 0.0e+00 1372.5 1275 54.7
Sed0015455 Sechium edule HOM05D004874 ORTHO05D006796 0.0e+00 1363.6 1274 54.7
AT2G22010 Arabidopsis thaliana HOM05D004874 ORTHO05D006796 0.0e+00 1363.2 1278 54.5
Lalb_Chr13g0296191 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1362.1 1268 53.3
AUR62016271 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1360.5 1275 54.0
Migut.H02425 Erythranthe guttata HOM05D004874 ORTHO05D006796 0.0e+00 1360.5 1273 53.7
AUR62003312 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1359.4 1278 54.0
MELO3C007488.2 Cucumis melo HOM05D004874 ORTHO05D006796 0.0e+00 1359.4 1235 56.0
Oeu028379.4 Olea europaea HOM05D004874 ORTHO05D006796 0.0e+00 1357.4 1378 50.7
HanXRQChr14g0446191 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1357.0 1284 53.3
AL4G11330 Arabidopsis lyrata HOM05D004874 ORTHO05D006796 0.0e+00 1356.7 1273 54.5
TAR628G0415 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1354.3 1187 59.1
ECA238G3208 Erigeron canadensis HOM05D004874 ORTHO05D006796 0.0e+00 1350.9 1276 53.1
Lsat_1_v5_gn_2_65401 Lactuca sativa HOM05D004874 ORTHO05D006796 0.0e+00 1350.1 1279 53.6
BcaB08g35028 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1347.0 1277 54.0
BcaC07g41106 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1343.6 1278 53.9
C08p41080 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1341.3 1278 53.8
Sp4g01070 Schrenkiella parvula HOM05D004874 ORTHO05D006796 0.0e+00 1338.9 1276 53.6
BolC8t51674H Brassica oleracea HOM05D004874 ORTHO05D006796 0.0e+00 1337.0 1284 53.6
HanXRQChr10g0295251 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1332.8 1284 52.9
A09p57840 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1331.6 1281 53.6
SGA_v2.0_scaffold2G01299 Striga asiatica HOM05D004874 ORTHO05D006796 0.0e+00 1331.6 1373 50.8
BraA09t41177Z Brassica rapa HOM05D004874 ORTHO05D006796 0.0e+00 1324.7 1287 53.4
Hund19660 Selenicereus undatus HOM05D004874 ORTHO05D006796 0.0e+00 1324.7 1229 55.7
Aa31LG7G14640 Aethionema arabicum HOM05D004874 ORTHO05D006796 0.0e+00 1323.9 1247 54.5
Thhalv10000015m.g Eutrema salsugineum HOM05D004874 ORTHO05D006796 0.0e+00 1315.4 1271 53.7
Zm00001eb328050 Zea mays HOM05D004874 ORTHO05D006796 0.0e+00 1314.3 1267 52.7
SalBow6G4347 Salvia bowleyana HOM05D004874 ORTHO05D006796 0.0e+00 1308.5 1179 55.6
DCAR_014257 Daucus carota HOM05D004874 ORTHO05D006796 0.0e+00 1288.9 1268 52.4
TAR376G0110 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1282.7 1041 61.3
SEGI_33214 Sequoiadendron giganteum HOM05D004874 ORTHO05D006796 0.0e+00 1220.7 1272 50.3
Nitab4.5_0000156g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 0.0e+00 1194.1 1043 57.0
MD01G1017400 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1154.4 1029 57.2
PGSC0003DMG400012951 Solanum tuberosum HOM05D004874 ORTHO05D006796 0.0e+00 1152.9 1048 55.3
unitig_899.g14600 Utricularia gibba HOM05D004874 ORTHO05D006796 0.0e+00 1102.8 1161 50.3
MBI02_g13022_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 0.0e+00 1093.6 834 63.9
Duzib147G0760 Durio zibethinus HOM05D004874 ORTHO05D006796 4.5e-308 1061.6 1266 44.9
FAN01G2715 Fragaria x ananassa HOM05D004874 ORTHO05D006796 1.9e-306 1056.2 943 56.7
Ah.02g124400 Amaranthus hybridus HOM05D004874 ORTHO05D006796 1.3e-302 1043.5 877 58.0
Lj2C562G3 Lonicera japonica HOM05D004874 ORTHO05D006796 1.0e-296 1023.8 832 60.5
Mapoly0047s0138 Marchantia polymorpha HOM05D004874 ORTHO05D006796 3.3e-295 1018.8 1332 44.1
COL.COLO4_11028 Corchorus olitorius HOM05D004874 ORTHO05D006796 9.0e-293 1010.7 1209 46.4
Pp3c2_2760 Physcomitrium patens HOM05D004874 ORTHO05D006796 1.4e-290 1003.4 1320 44.3
Cpa.g.sc196.7 Carica papaya HOM05D004874 ORTHO05D006796 5.7e-287 991.5 830 59.0
Pp3c1_33900 Physcomitrium patens HOM05D004874 ORTHO05D006796 7.4e-287 991.1 1292 44.2
FAN06G3019 Fragaria x ananassa HOM05D004874 ORTHO05D006796 2.4e-285 986.1 935 55.4
Pp3c17_14550 Physcomitrium patens HOM05D004874 ORTHO05D006796 4.7e-273 945.3 1332 42.2
SMO143G0116 Selaginella moellendorffii HOM05D004874 ORTHO05D006796 1.4e-272 943.7 1201 43.0
FAN06G4447 Fragaria x ananassa HOM05D004874 ORTHO05D006796 5.0e-267 925.2 935 53.3
vmacro12908 Vaccinium macrocarpon HOM05D004874 ORTHO05D006796 1.1e-266 924.1 777 58.2
CiPaw.04G092800 Carya illinoinensis HOM05D004874 ORTHO05D006796 3.6e-265 919.1 807 59.4
AagrBONN_evm.TU.Sc2ySwM_228.911 Anthoceros agrestis HOM05D004874 ORTHO05D006796 5.5e-258 895.2 1154 44.8
FAN10G0201 Fragaria x ananassa HOM05D004874 ORTHO05D006796 1.9e-250 870.2 688 61.5
Oeu030684.1 Olea europaea HOM05D004874 ORTHO05D006796 3.4e-231 806.2 763 53.9
MSTRG.2539 Avicennia marina HOM05D004874 ORTHO05D006796 8.9e-216 755.0 766 52.3
CBR_g4334 Chara braunii HOM05D004874 ORTHO05D006796 3.1e-200 703.4 1466 34.0
HPP92_016847 Vanilla planifolia HOM05D004874 ORTHO05D006796 9.9e-199 698.4 615 55.0
HPP92_016848 Vanilla planifolia HOM05D004874 ORTHO05D006796 2.6e-191 673.7 624 55.6
FvH4_7g04730 Fragaria vesca HOM05D004874 ORTHO05D006796 6.2e-185 652.5 550 58.2
FAN03G2613 Fragaria x ananassa HOM05D004874 ORTHO05D006796 5.5e-181 639.4 503 63.4
Oeu030685.1 Olea europaea HOM05D004874 ORTHO05D006796 4.8e-169 599.7 502 55.0
Lj2A562T49 Lonicera japonica HOM05D004874 ORTHO05D006796 2.1e-116 424.9 463 48.8
MBI02_g44126_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 1.2e-87 329.3 363 49.3
Cpa.g.sc196.6 Carica papaya HOM05D004874 ORTHO05D006796 5.6e-85 320.5 276 58.0
Os07g0626900 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 3.8e-81 307.8 262 58.0
Cc07_g14920 Coffea canephora HOM05D004874 ORTHO05D006796 2.3e-78 298.5 396 42.9
Ah.02g124390 Amaranthus hybridus HOM05D004874 ORTHO05D006796 1.9e-69 268.9 336 44.6
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 2.4e-67 261.9 1389 23.6
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 3.5e-63 248.1 865 25.9
FvH4_7g04731 Fragaria vesca HOM05D004874 ORTHO05D006796 1.1e-37 163.3 154 54.5
Sabra07G0068700 Salix brachista HOM05D004874 ORTHO05D006796 4.8e-36 157.9 243 41.2
Nitab4.5_0010573g0010 Nicotiana tabacum HOM05D004874 ORTHO05D006796 1.4e-35 156.4 153 51.6
Solyc05g055570.3 Solanum lycopersicum HOM05D004874 ORTHO05D014502 7.7e-26 124.0 108 60.2
HanXRQChr11g0324541 Helianthus annuus HOM05D004874 ORTHO05D006796 2.1e-23 115.9 78 66.7
Zm00001eb137300 Zea mays HOM05D004874 ORTHO05D006796 6.8e-14 84.3 69 58.0
HanXRQChr11g0341101 Helianthus annuus HOM05D004874 ORTHO05D006796 5.9e-10 71.2 50 64.0
Cre03.g188750 Chlamydomonas reinhardtii HOM05D000032 ORTHO05D028824 7.8e-10 70.9 140 32.9
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 1.7e-09 69.7 95 38.9
HanXRQChr12g0385291 Helianthus annuus HOM05D004874 ORTHO05D006796 5.0e-09 68.2 59 57.6
BcaC09g48952 Brassica carinata HOM05D004874 ORTHO05D014502 8.6e-09 67.4 53 64.2
BcaC06g36156 Brassica carinata HOM05D004874 ORTHO05D014502 1.9e-08 66.2 53 62.3
BcaC04g21885 Brassica carinata HOM05D004874 ORTHO05D014502 4.7e-07 61.6 56 55.4
Haze_26842 Corylus avellana HOM05D000032 ORTHO05D028824 8.0e-07 60.8 113 27.4
CBR_g30766 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-06 60.1 110 32.7
C07p07140 Brassica napus HOM05D004874 ORTHO05D014502 1.8e-06 59.7 62 51.6
MCO01G564 Micromonas commoda HOM05D003906 ORTHO05D004776 1.8e-06 59.7 120 30.8
MCO11G679 Micromonas commoda HOM05D000032 ORTHO05D028824 1.8e-06 59.7 135 27.4
Cre09.g387801 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 6.8e-06 57.8 131 29.8
C01p44130 Brassica napus HOM05D004874 ORTHO05D014502 8.9e-06 57.4 48 60.4


User provided reference genes

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