Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G0147 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 2.2e-113 412.5 238 100.0
CDE11G0767 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 2.3e-91 339.3 208 97.6
ATR0767G209 Amborella trichopoda HOM05D005935 ORTHO05D007012 4.2e-77 292.0 204 84.8
ClCG02G015080 Citrullus lanatus HOM05D005935 ORTHO05D007012 9.1e-72 274.2 204 84.8
MELO3C004198.2 Cucumis melo HOM05D005935 ORTHO05D007012 9.1e-72 274.2 204 84.8
TAR362G1094 Trochodendron aralioides HOM05D005935 ORTHO05D007012 1.6e-71 273.5 205 83.9
SEGI_34613 Sequoiadendron giganteum HOM05D005935 ORTHO05D007012 3.5e-71 272.3 204 77.0
CsaV3_2G006940 Cucumis sativus L. HOM05D005935 ORTHO05D007012 4.5e-71 271.9 204 83.8
MD04G1195100 Malus domestica HOM05D005935 ORTHO05D007012 4.5e-71 271.9 202 86.6
Manes.09G175700 Manihot esculenta HOM05D005935 ORTHO05D007012 4.5e-71 271.9 201 86.1
GSVIVG01031220001 Vitis vinifera HOM05D005935 ORTHO05D007012 5.9e-71 271.6 206 83.5
Dinv24425 Davidia involucrata HOM05D005935 ORTHO05D007012 2.9e-70 269.2 206 84.5
Prupe.6G314900 Prunus persica HOM05D005935 ORTHO05D007012 3.8e-70 268.9 205 84.9
Sed0001365 Sechium edule HOM05D005935 ORTHO05D007012 3.8e-70 268.9 204 82.8
EL10Ac4g09829 Beta vulgaris HOM05D005935 ORTHO05D007012 8.6e-70 267.7 205 83.9
Aqoxy2G00839 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 3.3e-69 265.8 207 85.0
MD12G1207200 Malus domestica HOM05D005935 ORTHO05D007012 5.5e-69 265.0 201 85.6
Nn3g21642 Nelumbo nucifera HOM05D005935 ORTHO05D007012 7.2e-69 264.6 200 83.5
CiPaw.07G028100 Carya illinoinensis HOM05D005935 ORTHO05D007012 1.2e-68 263.8 205 82.0
Eucgr.H03282 Eucalyptus grandis HOM05D005935 ORTHO05D007012 1.2e-68 263.8 201 84.1
Lj1g0021681 Lotus japonicus HOM05D005935 ORTHO05D007012 1.6e-68 263.5 201 81.6
Atru.chr2.148 Acer truncatum HOM05D005935 ORTHO05D007012 2.1e-68 263.1 202 83.2
Os03g0831900 Oryza sativa ssp. japonica HOM05D005935 ORTHO05D007012 3.6e-68 262.3 202 81.2
SGA_v2.0_scaffold81G26126 Striga asiatica HOM05D005935 ORTHO05D007012 3.6e-68 262.3 205 82.9
Haze_04079 Corylus avellana HOM05D005935 ORTHO05D007012 8.0e-68 261.2 211 79.1
TAR636G0846 Trochodendron aralioides HOM05D005935 ORTHO05D007012 1.0e-67 260.8 205 83.4
Migut.N01391 Erythranthe guttata HOM05D005935 ORTHO05D007012 2.3e-67 259.6 205 82.0
Phvul.001G225500 Phaseolus vulgaris HOM05D005935 ORTHO05D007012 2.3e-67 259.6 206 81.6
PGR031G1309 Punica granatum HOM05D005935 ORTHO05D007012 2.3e-67 259.6 200 81.5
RcHm_v2.0_Chr3g0456881 Rosa chinensis HOM05D005935 ORTHO05D007012 2.3e-67 259.6 201 83.6
Ah.06g188880 Amaranthus hybridus HOM05D005935 ORTHO05D007012 3.0e-67 259.2 205 81.0
Lsat_1_v5_gn_5_102820 Lactuca sativa HOM05D005935 ORTHO05D007012 3.0e-67 259.2 199 82.9
Glyma.19G228900 Glycine max HOM05D005935 ORTHO05D007012 4.0e-67 258.8 205 81.5
Zm00001eb121760 Zea mays HOM05D005935 ORTHO05D007012 6.8e-67 258.1 201 77.1
Aqoxy4G02482 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 1.2e-66 257.3 207 83.1
MSTRG.27950 Avicennia marina HOM05D005935 ORTHO05D007012 1.2e-66 257.3 205 82.4
SGA_v2.0_scaffold80G25879 Striga asiatica HOM05D005935 ORTHO05D007012 1.2e-66 257.3 205 81.5
CAN.G1715.16 Capsicum annuum HOM05D005935 ORTHO05D007012 1.5e-66 256.9 204 80.9
Cc02_g34830 Coffea canephora HOM05D005935 ORTHO05D007012 1.5e-66 256.9 204 78.9
arahy.Tifrunner.gnm1.ann1.H1X696 Arachis hypogaea HOM05D005935 ORTHO05D007012 4.4e-66 255.4 207 79.2
arahy.Tifrunner.gnm1.ann1.I9BDFC Arachis hypogaea HOM05D005935 ORTHO05D007012 4.4e-66 255.4 207 78.7
arahy.Tifrunner.gnm1.ann1.G5WI6L Arachis hypogaea HOM05D005935 ORTHO05D007012 5.7e-66 255.0 205 80.0
arahy.Tifrunner.gnm1.ann1.7UDZ1N Arachis hypogaea HOM05D005935 ORTHO05D007012 7.5e-66 254.6 207 76.8
Sopen01g043840 Solanum pennellii HOM05D005935 ORTHO05D007012 7.5e-66 254.6 204 78.4
Solyc01g100330.3 Solanum lycopersicum HOM05D005935 ORTHO05D007012 1.7e-65 253.4 204 77.9
PGSC0003DMG400002806 Solanum tuberosum HOM05D005935 ORTHO05D007012 1.7e-65 253.4 204 77.9
TWI36G1229 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 1.7e-65 253.4 201 82.6
SalBow3G1520 Salvia bowleyana HOM05D005935 ORTHO05D007012 2.2e-65 253.1 204 78.4
Glyma.03G231900 Glycine max HOM05D005935 ORTHO05D007012 3.7e-65 252.3 204 79.4
FvH4_6g07240 Fragaria vesca HOM05D005935 ORTHO05D007012 6.3e-65 251.5 198 83.3
Cpa.g.sc48.144 Carica papaya HOM05D005935 ORTHO05D007012 1.8e-64 250.0 201 81.6
TWI56G1463 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 1.8e-64 250.0 201 81.6
Ca_09298_v3 Cicer arietinum L. HOM05D005935 ORTHO05D007012 3.1e-64 249.2 205 78.0
Hma1.2p1_0008F-1.1_g005750 Hydrangea macrophylla HOM05D005935 ORTHO05D007012 3.1e-64 249.2 205 80.0
Actinidia16851 Actinidia chinensis HOM05D005935 ORTHO05D007012 4.1e-64 248.8 195 84.1
Thecc.05G321000 Theobroma cacao HOM05D005935 ORTHO05D007012 4.1e-64 248.8 201 81.1
Lalb_Chr18g0046051 Lupinus albus HOM05D005935 ORTHO05D007012 9.2e-64 247.7 206 78.2
VMungo1383G1193 Vigna mungo HOM05D005935 ORTHO05D007012 1.2e-63 247.3 198 81.3
C05p61480 Brassica napus HOM05D002110 ORTHO05D007012 2.7e-63 246.1 199 78.4
Ciclev10002528m.g Citrus clementina HOM05D005935 ORTHO05D007012 2.7e-63 246.1 200 81.5
COL.COLO4_04140 Corchorus olitorius HOM05D005935 ORTHO05D007012 2.7e-63 246.1 201 80.1
FAN05G5324 Fragaria x ananassa HOM05D005935 ORTHO05D007012 2.7e-63 246.1 207 79.2
Gohir.D08G223300 Gossypium hirsutum HOM05D005935 ORTHO05D007012 2.7e-63 246.1 201 81.1
Gorai.004G237200 Gossypium raimondii HOM05D005935 ORTHO05D007012 2.7e-63 246.1 201 81.1
Peaxi162Scf00673g00126 Petunia axillaris HOM05D005935 ORTHO05D007012 2.7e-63 246.1 196 81.6
unitig_21.g20172 Utricularia gibba HOM05D005935 ORTHO05D007012 2.7e-63 246.1 202 80.7
FAN14G3557 Fragaria x ananassa HOM05D005935 ORTHO05D007012 3.5e-63 245.7 207 79.2
QL03p018299 Quercus lobata HOM05D005935 ORTHO05D007012 3.5e-63 245.7 204 77.5
Medtr7g112060 Medicago truncatula HOM05D005935 ORTHO05D007012 5.9e-63 245.0 199 77.9
FAN02G1619 Fragaria x ananassa HOM05D005935 ORTHO05D007012 7.8e-63 244.6 207 78.7
Gohir.A08G206600 Gossypium hirsutum HOM05D005935 ORTHO05D007012 1.0e-62 244.2 201 80.6
Mapoly0111s0002 Marchantia polymorpha HOM05D005935 ORTHO05D007012 1.7e-62 243.4 197 77.7
Sc09g0002670 Simmondsia chinensis HOM05D005935 ORTHO05D007012 1.7e-62 243.4 205 79.5
PSO170G3047 Papaver somniferum HOM05D005935 ORTHO05D007012 2.3e-62 243.0 200 80.5
PSO357G0321 Papaver somniferum HOM05D005935 ORTHO05D007012 2.3e-62 243.0 200 80.5
HanXRQChr10g0299201 Helianthus annuus HOM05D005935 ORTHO05D007012 2.9e-62 242.7 200 81.0
BraA05t22944Z Brassica rapa HOM05D002110 ORTHO05D007012 3.8e-62 242.3 199 75.9
CANSAT54G1507 Cannabis sativa HOM05D005935 ORTHO05D007012 5.0e-62 241.9 207 79.2
QL01p019294 Quercus lobata HOM05D005935 ORTHO05D007012 5.0e-62 241.9 200 79.0
CARHR080230 Cardamine hirsuta HOM05D005935 ORTHO05D007012 6.6e-62 241.5 199 78.4
BolC5t34806H Brassica oleracea HOM05D002110 ORTHO05D007012 8.6e-62 241.1 198 74.2
BcaC05g30089 Brassica carinata HOM05D005935 ORTHO05D007012 1.5e-61 240.4 199 74.4
Potri.013G010300 Populus trichocarpa HOM05D005935 ORTHO05D007012 1.5e-61 240.4 200 81.0
Pp3c4_20180 Physcomitrium patens HOM05D005935 ORTHO05D007012 1.9e-61 240.0 202 76.2
Lalb_Chr04g0260471 Lupinus albus HOM05D005935 ORTHO05D007012 2.5e-61 239.6 206 69.9
vmacro01555 Vaccinium macrocarpon HOM05D005935 ORTHO05D007012 5.6e-61 238.4 248 67.3
THA.LOC104802776 Tarenaya hassleriana HOM05D005935 ORTHO05D007012 1.2e-60 237.3 199 75.9
AUR62000683 Chenopodium quinoa HOM05D005935 ORTHO05D007012 3.6e-60 235.7 205 75.1
ECA234G4853 Erigeron canadensis HOM05D005935 ORTHO05D007012 3.6e-60 235.7 204 75.0
Sp3g04650 Schrenkiella parvula HOM05D005935 ORTHO05D007012 1.4e-59 233.8 199 73.9
Carub.0003s0513 Capsella rubella HOM05D005935 ORTHO05D007012 5.2e-59 231.9 199 73.9
PSO478G5244 Papaver somniferum HOM05D005935 ORTHO05D007012 6.8e-59 231.5 195 80.5
AT3G05760 Arabidopsis thaliana HOM05D005935 ORTHO05D007012 1.2e-58 230.7 199 73.9
Duzib128G1094 Durio zibethinus HOM05D005935 ORTHO05D007012 1.5e-58 230.3 151 79.5
FAN09G4449 Fragaria x ananassa HOM05D005935 ORTHO05D007012 2.0e-58 229.9 145 83.4
Psat3g013040 Pisum sativum HOM05D005935 ORTHO05D007012 3.4e-58 229.2 199 73.9
HPP92_015241 Vanilla planifolia HOM05D005935 ORTHO05D007012 5.8e-58 228.4 196 80.1
CSS0047945 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 7.5e-58 228.0 164 89.6
AL3G16500 Arabidopsis lyrata HOM05D005935 ORTHO05D007012 1.3e-57 227.3 199 72.4
Nitab4.5_0013342g0020 Nicotiana tabacum HOM05D000001 ORTHO05D004269 1.3e-57 227.3 208 75.0
TPR.G1633 Trifolium pratense HOM05D005935 ORTHO05D007012 1.3e-57 227.3 200 72.5
Nitab4.5_0000155g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 2.9e-57 226.1 204 73.5
BcaC05g29782 Brassica carinata HOM05D005935 ORTHO05D007012 4.9e-57 225.3 199 70.9
AagrBONN_evm.TU.Sc2ySwM_344.1201 Anthoceros agrestis HOM05D005935 ORTHO05D007012 8.3e-57 224.6 147 76.2
DCAR_005416 Daucus carota HOM05D005935 ORTHO05D007012 7.0e-56 221.5 171 84.8
AagrBONN_evm.TU.Sc2ySwM_228.1845 Anthoceros agrestis HOM05D005935 ORTHO05D007012 1.0e-54 217.6 144 75.0
AagrBONN_evm.TU.Sc2ySwM_368.1862 Anthoceros agrestis HOM05D005935 ORTHO05D007012 7.3e-53 211.5 130 80.8
Aa31LG5G16170 Aethionema arabicum HOM05D005935 ORTHO05D007012 4.0e-51 205.7 212 57.1
Hund07136 Selenicereus undatus HOM05D005935 ORTHO05D007012 2.0e-50 203.4 296 53.4
Thhalv10022198m.g Eutrema salsugineum HOM05D005935 ORTHO05D007012 2.6e-50 203.0 278 55.0
AUR62005273 Chenopodium quinoa HOM05D005935 ORTHO05D007012 4.4e-50 202.2 199 70.9
Nitab4.5_0000368g0260 Nicotiana tabacum HOM05D005935 ORTHO05D007012 8.3e-49 198.0 203 61.6
SMO201G0167 Selaginella moellendorffii HOM05D005935 ORTHO05D007012 5.4e-48 195.3 204 61.8
CSS0009551 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.3e-46 190.7 197 71.6
Lj5A336T44 Lonicera japonica HOM05D005935 ORTHO05D007012 1.7e-46 190.3 112 83.0
Hund21747 Selenicereus undatus HOM05D005935 ORTHO05D007012 5.1e-46 188.7 204 67.2
Rhsim11G0094200 Rhododendron simsii HOM05D005935 ORTHO05D007012 6.6e-46 188.3 205 57.1
Pp3c12_7700 Physcomitrium patens HOM05D005935 ORTHO05D007012 3.4e-42 176.0 173 72.3
CSS0024691 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.2e-39 167.5 145 66.2
Oeu013219.2 Olea europaea HOM05D005935 ORTHO05D007012 2.7e-39 166.4 224 61.6
RcHm_v2.0_Chr7g0179971 Rosa chinensis HOM05D005935 ORTHO05D007012 2.3e-38 163.3 144 62.5
CSS0031844 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 7.6e-34 148.3 122 68.0
CSS0034550 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.3e-33 147.5 209 60.8
Nitab4.5_0007747g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 6.4e-33 145.2 124 83.1
CBR_g38440 Chara braunii HOM05D005935 ORTHO05D007012 6.0e-31 138.7 200 48.0
Sabra13G0008800 Salix brachista HOM05D005935 ORTHO05D007012 6.0e-31 138.7 123 65.0
Actinidia35528 Actinidia chinensis HOM05D005935 ORTHO05D007012 2.5e-29 133.3 285 47.4
Cre07.g341650 Chlamydomonas reinhardtii HOM05D005935 ORTHO05D007012 2.4e-27 126.7 228 50.0
FAN04G2955 Fragaria x ananassa HOM05D005935 ORTHO05D007012 4.2e-24 115.9 154 46.8
MCO03G264 Micromonas commoda HOM05D005935 ORTHO05D007012 1.3e-20 104.4 213 42.7
PRCOL_00000245 Prasinoderma coloniale HOM05D005935 ORTHO05D007012 1.1e-16 91.3 213 38.0
Zm00001eb307900 Zea mays HOM05D005935 ORTHO05D007012 1.2e-15 87.8 96 71.9
Zm00001eb114570 Zea mays HOM05D005935 ORTHO05D007012 5.1e-14 82.4 91 72.5
Zm00001eb180860 Zea mays HOM05D005935 ORTHO05D007012 2.6e-10 70.1 46 76.1
Cfa024511 Carpinus fangiana HOM05D005935 ORTHO05D007012 2.1e-07 60.5 142 28.9


User provided reference genes

Program Settings