Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G0352 Ceratophyllum demersum HOM05D007201 ORTHO05D009122 4.2e-181 637.9 320 100.0
MELO3C010035.2 Cucumis melo HOM05D007201 ORTHO05D009122 4.7e-63 245.7 337 46.6
CsaV3_1G044360 Cucumis sativus L. HOM05D007201 ORTHO05D009122 1.8e-62 243.8 336 46.4
TAR626G0209 Trochodendron aralioides HOM05D007201 ORTHO05D009122 5.7e-61 238.8 350 44.9
PSO339G5324 Papaver somniferum HOM05D007201 ORTHO05D009122 2.2e-60 236.9 361 41.3
Manes.02G222200 Manihot esculenta HOM05D007201 ORTHO05D009122 2.3e-57 226.9 342 44.4
QL11p005700 Quercus lobata HOM05D007201 ORTHO05D009122 8.6e-57 224.9 350 42.6
Ciclev10008517m.g Citrus clementina HOM05D007201 ORTHO05D009122 1.2e-55 221.1 346 40.8
Nn8g41282 Nelumbo nucifera HOM05D007201 ORTHO05D009122 1.6e-55 220.7 346 42.5
FvH4_4g00131 Fragaria vesca HOM05D007201 ORTHO05D009122 2.3e-54 216.9 339 44.0
Gorai.012G009900 Gossypium raimondii HOM05D007201 ORTHO05D009122 6.8e-54 215.3 372 39.8
Rhsim03G0269700 Rhododendron simsii HOM05D007201 ORTHO05D009122 7.5e-53 211.8 363 39.9
RcHm_v2.0_Chr4g0384751 Rosa chinensis HOM05D007201 ORTHO05D009122 7.5e-53 211.8 347 43.5
Lj3g0009807 Lotus japonicus HOM05D007201 ORTHO05D009122 1.7e-52 210.7 318 44.3
FAN12G0236 Fragaria x ananassa HOM05D007201 ORTHO05D009122 2.2e-52 210.3 327 43.1
Thecc.09G202300 Theobroma cacao HOM05D007201 ORTHO05D009122 3.7e-52 209.5 372 41.4
Gohir.D04G008200 Gossypium hirsutum HOM05D007201 ORTHO05D009122 6.3e-52 208.8 348 40.8
MD04G1000600 Malus domestica HOM05D007201 ORTHO05D009122 1.1e-51 208.0 368 39.7
Haze_21242 Corylus avellana HOM05D007201 ORTHO05D009122 9.2e-51 204.9 370 39.7
Atru.chr7.298 Acer truncatum HOM05D007201 ORTHO05D009122 4.5e-50 202.6 340 39.1
CSS0027843 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 4.5e-50 202.6 369 38.5
COL.COLO4_09000 Corchorus olitorius HOM05D007201 ORTHO05D009122 5.9e-50 202.2 379 38.8
Lsat_1_v5_gn_5_80700 Lactuca sativa HOM05D007201 ORTHO05D009122 1.3e-49 201.1 310 41.9
Cc06_g23490 Coffea canephora HOM05D007201 ORTHO05D009122 2.3e-49 200.3 399 36.6
Cfa012872 Carpinus fangiana HOM05D007201 ORTHO05D009122 3.8e-49 199.5 365 39.5
CiPaw.15G000100 Carya illinoinensis HOM05D007201 ORTHO05D009122 6.6e-49 198.7 327 40.4
Actinidia03796 Actinidia chinensis HOM05D007201 ORTHO05D009122 8.6e-49 198.4 368 37.2
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 2.5e-48 196.8 367 39.2
Medtr4g078160 Medicago truncatula HOM05D007201 ORTHO05D009122 7.3e-48 195.3 361 39.1
Prupe.1G000600 Prunus persica HOM05D007201 ORTHO05D009122 2.1e-47 193.7 367 38.4
VMungo1127G0228 Vigna mungo HOM05D007201 ORTHO05D009122 2.1e-47 193.7 295 42.7
Eucgr.C00055 Eucalyptus grandis HOM05D007201 ORTHO05D009122 2.8e-47 193.4 298 43.0
Sc10g0006090 Simmondsia chinensis HOM05D007201 ORTHO05D009122 2.8e-47 193.4 367 39.0
Glyma.11G109000 Glycine max HOM05D007201 ORTHO05D009122 3.6e-47 193.0 315 40.6
arahy.Tifrunner.gnm1.ann1.X4HTYC Arachis hypogaea HOM05D007201 ORTHO05D009122 6.1e-47 192.2 349 39.3
PGSC0003DMG400002893 Solanum tuberosum HOM05D007201 ORTHO05D009122 8.0e-47 191.8 365 39.7
Peaxi162Scf00047g02450 Petunia axillaris HOM05D007201 ORTHO05D009122 1.4e-46 191.0 332 40.4
Phvul.011G018600 Phaseolus vulgaris HOM05D007201 ORTHO05D009122 1.4e-46 191.0 338 39.3
Potri.006G081100 Populus trichocarpa HOM05D007201 ORTHO05D009122 1.8e-46 190.7 406 36.5
Lju50A20G7 Lonicera japonica HOM05D007201 ORTHO05D009122 2.3e-46 190.3 388 35.8
arahy.Tifrunner.gnm1.ann1.G7GJBK Arachis hypogaea HOM05D007201 ORTHO05D009122 3.0e-46 189.9 351 38.7
HanXRQChr10g0309261 Helianthus annuus HOM05D007201 ORTHO05D009122 3.0e-46 189.9 233 48.5
HPP92_017373 Vanilla planifolia HOM05D007201 ORTHO05D009122 4.0e-46 189.5 364 36.3
Hund22525 Selenicereus undatus HOM05D007201 ORTHO05D009122 1.2e-45 188.0 361 38.5
Sopen12g004380 Solanum pennellii HOM05D007201 ORTHO05D009122 1.2e-45 188.0 402 36.1
Glyma.12G016400 Glycine max HOM05D007201 ORTHO05D009122 1.5e-45 187.6 300 40.0
Aqoxy7G02518 Aquilegia oxysepala HOM05D007201 ORTHO05D009122 2.6e-45 186.8 351 39.9
Lalb_Chr19g0140031 Lupinus albus HOM05D007201 ORTHO05D009122 2.6e-45 186.8 293 40.3
GSVIVG01034266001 Vitis vinifera HOM05D007201 ORTHO05D009122 2.6e-45 186.8 387 36.2
ECA240G0013 Erigeron canadensis HOM05D006383 ORTHO05D007815 4.4e-45 186.0 381 35.4
SGA_v2.0_scaffold21G09583 Striga asiatica HOM05D007201 ORTHO05D009122 7.5e-45 185.3 418 34.0
Cpa.g.sc46.114 Carica papaya HOM05D007201 ORTHO05D009122 1.3e-44 184.5 318 39.0
ECA234G1264 Erigeron canadensis HOM05D007201 ORTHO05D009122 3.7e-44 183.0 363 36.9
TPR.G28027 Trifolium pratense HOM05D007201 ORTHO05D009122 6.4e-44 182.2 387 34.9
Psat7g169960 Pisum sativum HOM05D007201 ORTHO05D009122 1.4e-43 181.0 353 37.1
ATR0626G320 Amborella trichopoda HOM05D007201 ORTHO05D009122 3.2e-43 179.9 367 40.1
CAN.G1591.3 Capsicum annuum HOM05D007201 ORTHO05D009122 4.1e-43 179.5 234 46.6
CANSAT25G2467 Cannabis sativa HOM05D007201 ORTHO05D009122 5.4e-43 179.1 146 61.6
Solyc12g009390.2 Solanum lycopersicum HOM05D007201 ORTHO05D009122 5.4e-43 179.1 364 37.1
Carub.0002s2218 Capsella rubella HOM05D007201 ORTHO05D009122 1.6e-42 177.6 364 36.5
FAN12G1512 Fragaria x ananassa HOM05D007201 ORTHO05D009122 1.6e-42 177.6 157 56.7
CSS0037159 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 5.9e-42 175.6 306 39.5
SHI24431 Sapria himalayana HOM05D007201 ORTHO05D009122 5.0e-41 172.6 247 41.3
Sabra06G0061200 Salix brachista HOM05D007201 ORTHO05D009122 6.6e-41 172.2 239 41.8
Nitab4.5_0000073g0490 Nicotiana tabacum HOM05D007201 ORTHO05D009122 1.9e-40 170.6 421 32.8
Zm00001eb227240 Zea mays HOM05D007201 ORTHO05D009122 2.5e-40 170.2 337 36.2
Aqoxy37s001 Aquilegia oxysepala HOM05D007201 ORTHO05D009122 1.6e-39 167.5 234 47.0
PGR142G4385 Punica granatum HOM05D007201 ORTHO05D009122 2.8e-39 166.8 355 35.5
SEGI_05170 Sequoiadendron giganteum HOM05D007201 ORTHO05D009122 2.8e-39 166.8 213 46.5
BcaC08g47362 Brassica carinata HOM05D007201 ORTHO05D009122 4.7e-39 166.0 386 33.9
Nitab4.5_0004827g0030 Nicotiana tabacum HOM05D007201 ORTHO05D009122 8.0e-39 165.2 338 36.4
C06p49330 Brassica napus HOM05D007201 ORTHO05D009122 1.4e-38 164.5 382 34.0
Os06g0704300 Oryza sativa ssp. japonica HOM05D007201 ORTHO05D009122 1.4e-38 164.5 305 37.7
CSS0027553 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 1.8e-38 164.1 179 50.3
Thhalv10018711m.g Eutrema salsugineum HOM05D007201 ORTHO05D009122 1.8e-38 164.1 357 34.2
A07p40900 Brassica napus HOM05D007201 ORTHO05D009122 2.3e-38 163.7 372 34.1
BraA07t31630Z Brassica rapa HOM05D007201 ORTHO05D009122 4.0e-38 162.9 383 32.9
AL2G35270 Arabidopsis lyrata HOM05D007201 ORTHO05D009122 8.9e-38 161.8 233 42.1
Sp5g30480 Schrenkiella parvula HOM05D007201 ORTHO05D009122 1.1e-35 154.8 228 40.4
vmacro22702 Vaccinium macrocarpon HOM05D007201 ORTHO05D009122 1.4e-35 154.5 428 31.3
BolC6t39968H Brassica oleracea HOM05D007201 ORTHO05D009122 1.9e-35 154.1 401 33.2
THA.LOC104809224 Tarenaya hassleriana HOM05D007201 ORTHO05D009122 4.1e-35 152.9 362 32.9
unitig_8.g3542 Utricularia gibba HOM05D007201 ORTHO05D009122 9.2e-35 151.8 316 34.5
CARHR068690 Cardamine hirsuta HOM05D007201 ORTHO05D009122 1.2e-34 151.4 241 41.1
EL10Ac2g03602 Beta vulgaris HOM05D007201 ORTHO05D009122 1.3e-33 147.9 266 41.4
AT1G75340 Arabidopsis thaliana HOM05D007201 ORTHO05D009122 3.9e-33 146.4 228 38.6
Aa31LG4G5550 Aethionema arabicum HOM05D007201 ORTHO05D009122 8.6e-33 145.2 245 39.6
FAN22G0406 Fragaria x ananassa HOM05D007201 ORTHO05D009122 3.6e-31 139.8 323 36.8
AUR62027959 Chenopodium quinoa HOM05D007201 ORTHO05D009122 4.7e-31 139.4 158 48.7
Oeu000954.1 Olea europaea HOM05D007201 ORTHO05D009122 3.2e-27 126.7 229 38.0
FAN17G0247 Fragaria x ananassa HOM05D007201 ORTHO05D009122 9.2e-27 125.2 96 60.4
Duzib168G1263 Durio zibethinus HOM05D007201 ORTHO05D009122 2.1e-26 124.0 375 32.8
Dinv26498 Davidia involucrata HOM05D007201 ORTHO05D009122 2.7e-26 123.6 383 30.3
Mapoly0005s0044 Marchantia polymorpha HOM05D007201 ORTHO05D009122 2.4e-22 110.5 217 40.6
Pp3c7_12210 Physcomitrium patens HOM05D007201 ORTHO05D009122 2.6e-21 107.1 372 28.5
Migut.L01609 Erythranthe guttata HOM05D007201 ORTHO05D009122 3.8e-20 103.2 345 29.9
AagrBONN_evm.TU.Sc2ySwM_117.2509 Anthoceros agrestis HOM05D007201 ORTHO05D009122 7.8e-18 95.5 208 33.7
CBR_g15955 Chara braunii HOM05D007201 ORTHO05D009122 2.1e-15 87.4 101 47.5
ClCG03G010480 Citrullus lanatus HOM05D007201 ORTHO05D009122 2.6e-13 80.5 208 32.7
CSS0006520 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 9.9e-13 78.6 61 57.4
CSS0048863 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 9.9e-13 78.6 61 57.4
Gohir.A05G407400 Gossypium hirsutum HOM05D007201 ORTHO05D009122 2.9e-12 77.0 224 31.7


User provided reference genes

Program Settings